cfi-toolkit 0.1.0__py3-none-any.whl → 0.1.1__py3-none-any.whl

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Files changed (6) hide show
  1. cfi_toolkit/__init__.py +1 -1
  2. {cfi_toolkit-0.1.0.dist-info → cfi_toolkit-0.1.1.dist-info}/METADATA +24 -24
  3. cfi_toolkit-0.1.1.dist-info/RECORD +7 -0
  4. cfi_toolkit-0.1.0.dist-info/RECORD +0 -7
  5. {cfi_toolkit-0.1.0.dist-info → cfi_toolkit-0.1.1.dist-info}/WHEEL +0 -0
  6. {cfi_toolkit-0.1.0.dist-info → cfi_toolkit-0.1.1.dist-info}/licenses/LICENSE +0 -0
cfi_toolkit/__init__.py CHANGED
@@ -18,5 +18,5 @@ from .CellFunctionality import *
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  from .CellGraph import *
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  print("")
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- print("Welcome in CFI v.0.0.1 library")
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+ print("Welcome in CFI v.0.1.1 library")
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  print("")
{cfi_toolkit-0.1.0.dist-info → cfi_toolkit-0.1.1.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: cfi-toolkit
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- Version: 0.1.0
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+ Version: 0.1.1
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  Summary: CFI: Cell Functionality and Interaction Analysis Tool
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  License: GPL-3
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  License-File: LICENSE
@@ -56,7 +56,7 @@ CFI extends these capabilities by enabling the identification of direct cell–c
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  <p align="center">
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- <img src="fig/log.png" alt="drawing" width="500" />
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+ <img src="https://github.com/jkubis96/CFI/raw/refs/heads/lib_merging/fig/log.png" alt="drawing" width="500" />
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  </p>
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@@ -111,7 +111,7 @@ In the case of interactions network analyses, it is recommended to use the [JVe
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  #### In command line write:
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  ```
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- pip install cfi
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+ pip install cfi-toolkit
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  ```
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@@ -139,7 +139,7 @@ Documentation for classes and functions is available here 👉 [Documentation
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  import os
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  from jdti import COMPsc # JDtI module for handling single-cell projects
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- from cfi import CellFunCon # Cell functional connectivity / enrichment analysis
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+ from cfi_toolkit import CellFunCon # Cell functional connectivity / enrichment analysis
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  # ------------------------------------------------------------
@@ -251,7 +251,7 @@ data = instance.get_enrichment_data(
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  Visualization
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  ```
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- from cfi import encrichment_cell_heatmap
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+ from cfi_toolkit import encrichment_cell_heatmap
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  fig = encrichment_cell_heatmap(data = data,
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  fig_size = (3,3),
@@ -267,7 +267,7 @@ fig = encrichment_cell_heatmap(data = data,
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  <p align="center">
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- <img src="fig/heatmap.svg" alt="drawing" width="450" />
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+ <img src="https://github.com/jkubis96/CFI/raw/refs/heads/lib_merging/fig/heatmap.svg" alt="drawing" width="450" />
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  </p>
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@@ -297,7 +297,7 @@ data = instance.get_enrichment_data(
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  Visualization
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  ```
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- from cfi import encrichment_cell_heatmap
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+ from cfi_toolkit import encrichment_cell_heatmap
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  fig = encrichment_cell_heatmap(data = enr,
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  fig_size = (3,3),
@@ -313,7 +313,7 @@ fig = encrichment_cell_heatmap(data = enr,
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  <p align="center">
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- <img src="fig/heatmap2.svg" alt="drawing" width="450" />
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+ <img src="https://github.com/jkubis96/CFI/raw/refs/heads/lib_merging/fig/heatmap2.svg" alt="drawing" width="450" />
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  </p>
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@@ -327,7 +327,7 @@ fig = encrichment_cell_heatmap(data = enr,
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  Visualization
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  ```
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- from cfi import encrichment_cell_heatmap
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+ from cfi_toolkit import encrichment_cell_heatmap
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  fig2 = encrichment_cell_heatmap(data = enr,
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  fig_size = (3,3),
@@ -348,7 +348,7 @@ fig2 = encrichment_cell_heatmap(data = enr,
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  <p align="center">
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- <img src="fig/heatmap3.svg" alt="drawing" width="450" />
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+ <img src="https://github.com/jkubis96/CFI/raw/refs/heads/lib_merging/fig/heatmap3.svg" alt="drawing" width="450" />
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  </p>
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@@ -380,7 +380,7 @@ data = instance.get_enrichment_data(
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  Visualization
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  ```
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- from cfi import encrichment_cell_heatmap
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+ from cfi_toolkit import encrichment_cell_heatmap
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  fig = encrichment_cell_heatmap(data = enr,
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  fig_size = (3,3),
@@ -396,7 +396,7 @@ fig = encrichment_cell_heatmap(data = enr,
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  <p align="center">
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- <img src="fig/heatmap4.svg" alt="drawing" width="450" />
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+ <img src="https://github.com/jkubis96/CFI/raw/refs/heads/lib_merging/fig/heatmap4.svg" alt="drawing" width="450" />
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  </p>
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@@ -427,7 +427,7 @@ data = instance.get_enrichment_data(
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  Visualization
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  ```
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- from cfi import encrichment_cell_heatmap
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+ from cfi_toolkit import encrichment_cell_heatmap
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  fig = encrichment_cell_heatmap(data = enr,
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  fig_size = (3,3),
@@ -443,7 +443,7 @@ fig = encrichment_cell_heatmap(data = enr,
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  <p align="center">
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- <img src="fig/heatmap5.svg" alt="drawing" width="450" />
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+ <img src="https://github.com/jkubis96/CFI/raw/refs/heads/lib_merging/fig/heatmap5.svg" alt="drawing" width="450" />
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  </p>
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  <br />
@@ -463,7 +463,7 @@ instance.get_included_cells()
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  ```
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  <p align="center">
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- <img src="fig/out_cell.bmp" alt="drawing" width="450" />
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+ <img src="https://github.com/jkubis96/CFI/raw/refs/heads/lib_merging/fig/out_cell.bmp" alt="drawing" width="450" />
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  </p>
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@@ -489,7 +489,7 @@ cell_int = instance.get_gene_interactions('STRIATUM_1 # s1')
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  Visualization
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  ```
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- from cfi import gene_interaction_network
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+ from cfi_toolkit import gene_interaction_network
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  fig5 = gene_interaction_network(idata = cell_int, min_con = 2)
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@@ -501,7 +501,7 @@ nt.edit()
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  <p align="center">
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- <img src="fig/gin.bmp" alt="drawing" width="300" />
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+ <img src="https://github.com/jkubis96/CFI/raw/refs/heads/lib_merging/fig/gin.bmp" alt="drawing" width="300" />
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  </p>
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  <br />
@@ -545,7 +545,7 @@ cell_con = instance.get_cell_connections()
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  Visualization
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  ```
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- from cfi import draw_cell_conections
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+ from cfi_toolkit import draw_cell_conections
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  fig = draw_cell_conections(cell_con)
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@@ -556,7 +556,7 @@ nt.edit()
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  ```
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  <p align="center">
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- <img src="fig/cell_con.bmp" alt="drawing" width="300" />
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+ <img src="https://github.com/jkubis96/CFI/raw/refs/heads/lib_merging/fig/cell_con.bmp" alt="drawing" width="300" />
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  </p>
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  <br />
@@ -576,7 +576,7 @@ instance.save_project('project')
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  Loading previously saved project
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  ```
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- from cfi import CellFunCon
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+ from cfi_toolkit import CellFunCon
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  instance = CellFunCon.load_project('project.psc')
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  ```
@@ -595,7 +595,7 @@ instance = CellFunCon.load_project('project.psc')
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  # ------------------------------------------------------------
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  import os
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  from jdti import COMPsc # JDtI module for single-cell project handling
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- from cfi import CellFunCon # Functional analysis and cell interaction inference
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+ from cfi_toolkit import CellFunCon # Functional analysis and cell interaction inference
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  # ------------------------------------------------------------
@@ -666,7 +666,7 @@ instance2.calculate_cell_connections()
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  # - healthy condition
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  # - disease condition
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- from cfi import compare_connections
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+ from cfi_toolkit import compare_connections
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  instances_dict = {
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  "healthy": instance2,
@@ -697,7 +697,7 @@ comparison = compare_connections(instances_dict=instances_dict,
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  Visualization
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  ```
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- from cfi import volcano_plot_conections
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+ from cfi_toolkit import volcano_plot_conections
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  fig = volcano_plot_conections(
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  deg_data = comparison,
@@ -714,7 +714,7 @@ fig = volcano_plot_conections(
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  <p align="center">
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- <img src="fig/volcano.svg" alt="drawing" width="450" />
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+ <img src="https://github.com/jkubis96/CFI/raw/refs/heads/lib_merging/fig/volcano.svg" alt="drawing" width="450" />
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  </p>
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cfi_toolkit-0.1.1.dist-info/RECORD ADDED
@@ -0,0 +1,7 @@
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+ cfi_toolkit/__init__.py,sha256=5h8Pwnc6Wn0mXt0IQ3Szq6CgbG2W0jn8SPFxlbjf5uE,670
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+ cfi_toolkit/CellFunctionality.py,sha256=7co-vJOZNSfRTFXp0TyCH7RHU6Xja4whTlKOhy3aX84,21846
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+ cfi_toolkit/CellGraph.py,sha256=5prcmuyf1eQDEmVc8Dagn6mTRKCtj9vWSLc7rOcBiF0,21046
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+ cfi_toolkit-0.1.1.dist-info/licenses/LICENSE,sha256=wwaTIeM5p1TYEKRnyL3ROkzDvoyNRr9VtroNBHjNQeo,35802
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+ cfi_toolkit-0.1.1.dist-info/METADATA,sha256=-jHdJ8KmxrgUZNKnJFUj2_mmAXrOZ2Mr6y56ejdVzZA,27199
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+ cfi_toolkit-0.1.1.dist-info/WHEEL,sha256=kJCRJT_g0adfAJzTx2GUMmS80rTJIVHRCfG0DQgLq3o,88
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+ cfi_toolkit-0.1.1.dist-info/RECORD,,
cfi_toolkit-0.1.0.dist-info/RECORD DELETED
@@ -1,7 +0,0 @@
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- cfi_toolkit/__init__.py,sha256=bPRm6fA7FuJ9JI6wd23mlsWj4ChzdoQ1vEIS9HW3Ubk,670
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- cfi_toolkit/CellFunctionality.py,sha256=7co-vJOZNSfRTFXp0TyCH7RHU6Xja4whTlKOhy3aX84,21846
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- cfi_toolkit/CellGraph.py,sha256=5prcmuyf1eQDEmVc8Dagn6mTRKCtj9vWSLc7rOcBiF0,21046
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- cfi_toolkit-0.1.0.dist-info/licenses/LICENSE,sha256=wwaTIeM5p1TYEKRnyL3ROkzDvoyNRr9VtroNBHjNQeo,35802
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- cfi_toolkit-0.1.0.dist-info/METADATA,sha256=aBCo9qd3SA5tsZiQXgLmYDMZOHQCfk45FVrfFG1jpZg,26505
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- cfi_toolkit-0.1.0.dist-info/WHEEL,sha256=kJCRJT_g0adfAJzTx2GUMmS80rTJIVHRCfG0DQgLq3o,88
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- cfi_toolkit-0.1.0.dist-info/RECORD,,