cellfinder 1.4.1__py3-none-any.whl → 1.9.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (29) hide show
  1. cellfinder/cli_migration_warning.py +3 -1
  2. cellfinder/core/classify/classify.py +51 -5
  3. cellfinder/core/classify/tools.py +13 -3
  4. cellfinder/core/detect/detect.py +94 -59
  5. cellfinder/core/detect/filters/plane/plane_filter.py +107 -10
  6. cellfinder/core/detect/filters/setup_filters.py +51 -12
  7. cellfinder/core/detect/filters/volume/ball_filter.py +5 -5
  8. cellfinder/core/detect/filters/volume/structure_detection.py +5 -0
  9. cellfinder/core/detect/filters/volume/structure_splitting.py +3 -2
  10. cellfinder/core/detect/filters/volume/volume_filter.py +1 -1
  11. cellfinder/core/download/download.py +2 -1
  12. cellfinder/core/main.py +162 -30
  13. cellfinder/core/tools/threading.py +4 -3
  14. cellfinder/core/tools/tools.py +1 -1
  15. cellfinder/core/train/{train_yml.py → train_yaml.py} +6 -15
  16. cellfinder/napari/curation.py +72 -21
  17. cellfinder/napari/detect/detect.py +87 -28
  18. cellfinder/napari/detect/detect_containers.py +41 -9
  19. cellfinder/napari/detect/thread_worker.py +26 -16
  20. cellfinder/napari/input_container.py +14 -4
  21. cellfinder/napari/train/train.py +5 -9
  22. cellfinder/napari/train/train_containers.py +2 -4
  23. cellfinder/napari/utils.py +6 -1
  24. {cellfinder-1.4.1.dist-info → cellfinder-1.9.0.dist-info}/METADATA +16 -12
  25. {cellfinder-1.4.1.dist-info → cellfinder-1.9.0.dist-info}/RECORD +29 -29
  26. {cellfinder-1.4.1.dist-info → cellfinder-1.9.0.dist-info}/WHEEL +1 -1
  27. {cellfinder-1.4.1.dist-info → cellfinder-1.9.0.dist-info}/entry_points.txt +1 -1
  28. {cellfinder-1.4.1.dist-info → cellfinder-1.9.0.dist-info/licenses}/LICENSE +0 -0
  29. {cellfinder-1.4.1.dist-info → cellfinder-1.9.0.dist-info}/top_level.txt +0 -0
{cellfinder-1.4.1.dist-info → cellfinder-1.9.0.dist-info}/RECORD RENAMED
@@ -1,32 +1,32 @@
1
1
  cellfinder/__init__.py,sha256=S5oQ3EORuyQTMYC4uUuzGKZ23J3Ya6q-1DOBib1KfiA,1166
2
- cellfinder/cli_migration_warning.py,sha256=gPtNrtnXvWpl5q0k_EGAQZg0DwcpCmuBTgpg56n5NfA,1578
2
+ cellfinder/cli_migration_warning.py,sha256=u4nKQiPYmpx0HRqm0PI8wBx78rNiiBSQSGciDoXEq78,1623
3
3
  cellfinder/core/__init__.py,sha256=pRFuQsl78HEK0S6gvhJw70QLbjjSBzP-GFO0AtVaGtk,62
4
- cellfinder/core/main.py,sha256=QiLo8qtK6hRT_cu-xSP9k93EE-dZjmb2xxocsY-hTwU,3836
4
+ cellfinder/core/main.py,sha256=8VRM05-FvUPLjcBFFYruV_0Yct-UQOW2a0u5ubjBDnw,10875
5
5
  cellfinder/core/types.py,sha256=lTqWE4v0SMM0qLAZJdyAzqV1nLgDtobEpglNJcXt160,106
6
6
  cellfinder/core/classify/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
7
7
  cellfinder/core/classify/augment.py,sha256=8dMbM7KhimM6NMgdMC53oHoCfYj1CIB-h3Yk8CZAxPw,6321
8
- cellfinder/core/classify/classify.py,sha256=p3TvpnTVCVa9xCSgHm7QsgHeYeNZaoSbvf9fgZ3uF0c,3560
8
+ cellfinder/core/classify/classify.py,sha256=cgZ_2aY8sbQbFo8-43RPPaQMSdS-nt4ukWRzDfWcuOU,5750
9
9
  cellfinder/core/classify/cube_generator.py,sha256=jC5aogTVy213PHouViSR9CgKkuOks3yk6csQC5kRoOE,17125
10
10
  cellfinder/core/classify/resnet.py,sha256=vGa85y_NcQnOXwAt5EtatLx5mrO8IoShCcNKtJ5-EFg,10034
11
- cellfinder/core/classify/tools.py,sha256=s5PEKAsZVbVuoferZ_nqMUM0f2bV_8WEKsdKe3SXEuE,2560
11
+ cellfinder/core/classify/tools.py,sha256=gdWE8cBMlT1pqxBKt6j2az7i7FOMR4N0ds4w9YnBvtQ,2924
12
12
  cellfinder/core/config/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
13
13
  cellfinder/core/config/cellfinder.conf,sha256=5i8axif7ekMutKDiVnZRs-LiJrgVQljg_beltidqtNk,56
14
14
  cellfinder/core/detect/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
15
- cellfinder/core/detect/detect.py,sha256=cd6D3XOzP5HEA_Hb3Ik4AVmNzu0im4sQxV46cCY6izU,8056
15
+ cellfinder/core/detect/detect.py,sha256=DZxots88sG7GgKjXT-35TecQtRXGVEB-tRx12fTZjXU,11245
16
16
  cellfinder/core/detect/filters/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
17
- cellfinder/core/detect/filters/setup_filters.py,sha256=gvWhdGVdGrK_Ab-t0kKPnXaf43qLi78ed_-vNPI0nE4,14554
17
+ cellfinder/core/detect/filters/setup_filters.py,sha256=-OFQsvMhxRhzHHATghQWjTUNudvo64uY27CHd7FSIk4,16210
18
18
  cellfinder/core/detect/filters/plane/__init__.py,sha256=lybcPbVDnurEQeq2FiLq0zR8p_ztarQOlajhdh1Q2-4,40
19
19
  cellfinder/core/detect/filters/plane/classical_filter.py,sha256=X5k266tbl9EHRVY5dls53B5IZlmP7U0UB9BsZ1ey_pc,13250
20
- cellfinder/core/detect/filters/plane/plane_filter.py,sha256=6FbAjxgt39_RdGDXC_pQ9ndtZtknuHJeTWtbR8cReEA,6102
20
+ cellfinder/core/detect/filters/plane/plane_filter.py,sha256=G22c48ecK7cCQWOutqmy0o5Y06rKTm0dM66-c7qUndk,10503
21
21
  cellfinder/core/detect/filters/plane/tile_walker.py,sha256=IiQibvWKnYlgl9h414fRklV7C2xZ0vXNmJ9t89DhYuI,4863
22
22
  cellfinder/core/detect/filters/volume/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
23
- cellfinder/core/detect/filters/volume/ball_filter.py,sha256=aarEBD6z3ejhNMFdKqKEHi9zLPkopqA3HkzV9RGd7BA,14461
24
- cellfinder/core/detect/filters/volume/structure_detection.py,sha256=AIHq-5u5VFpKBBLEsE1Py-MlndbL8T0zXu0Bq2CI16Y,12916
25
- cellfinder/core/detect/filters/volume/structure_splitting.py,sha256=0LGE8cQ6EJIsKqWWmd087Q3At8m-PUDmmPjCZKV1TdY,10138
26
- cellfinder/core/detect/filters/volume/volume_filter.py,sha256=o9_4IsITedhqkhfwRsIhE53_zLNcFjgQzXbMMddH_q4,20544
23
+ cellfinder/core/detect/filters/volume/ball_filter.py,sha256=DSBaHXtJ8TM71xT4fgzwL9E1MTE1euNv0vZ6Ozcx5cQ,14491
24
+ cellfinder/core/detect/filters/volume/structure_detection.py,sha256=jibzhm5WDKDQMO2vMRiqDwxoMKsjNYzUVfp5Dla2sBU,13207
25
+ cellfinder/core/detect/filters/volume/structure_splitting.py,sha256=C4YFamJtJuHZJwC5IJfrFG6TBIUh20kvSyvVR67SEOo,10129
26
+ cellfinder/core/detect/filters/volume/volume_filter.py,sha256=G9uK6rALRTZufrihzz5TVtE1oGpkXNktrFA4nnOIEaM,20573
27
27
  cellfinder/core/download/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
28
28
  cellfinder/core/download/cli.py,sha256=X9L9ZIkWqs58hX8G8q_0AKN4gk8BhydGxI9nLpdHQQE,1764
29
- cellfinder/core/download/download.py,sha256=YQP4NMM9Xt0rECRJEV5z6RCZNi5uCFhohFnDreH0qHA,3277
29
+ cellfinder/core/download/download.py,sha256=bmPwOm48ApylydasJ8ZvuoQgSSlsb8k4_DL1ikNZrIY,3318
30
30
  cellfinder/core/tools/IO.py,sha256=jK1R_6YahQ_MbPlwg1IM-Fp-din-hLBNq71Jxn3q2WQ,1356
31
31
  cellfinder/core/tools/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
32
32
  cellfinder/core/tools/array_operations.py,sha256=LDbqWA_N2YtxeKS877QYdJRL2FCMC1R1ExJtdb6-vEA,3371
@@ -35,27 +35,27 @@ cellfinder/core/tools/image_processing.py,sha256=z27bGjf3Iv3G4Nt1OYzpEnIYQNc4nNo
35
35
  cellfinder/core/tools/prep.py,sha256=YU4VDyjEsOXn3S3gymEfPUzka-WYiHmR4Q4XdRebhDI,2175
36
36
  cellfinder/core/tools/source_files.py,sha256=vvwsIMe1ULKvXg_x22L75iqvCyMjEbUjJsDFQk3GYzY,856
37
37
  cellfinder/core/tools/system.py,sha256=WvEzPr7v-ohLDnzf4n13TMcN5OYIAXOEkaSmrHzdnwc,2438
38
- cellfinder/core/tools/threading.py,sha256=EmDLF22ZvXJnsWg7g6sv4cZgNweC0YrVw2o7QXjrO9s,14094
38
+ cellfinder/core/tools/threading.py,sha256=mc-XVEfLHj3AFWYcK1Qh4TKmVuW4mNaxgLBlQmBVViU,14154
39
39
  cellfinder/core/tools/tiff.py,sha256=NzIz6wq2GzxmcIhawFMwZADe-uQO2rIG46H7xkpGKLs,2899
40
- cellfinder/core/tools/tools.py,sha256=opMGC5GBBsId0dmL8V0KQrI4U70w_D_KtGQYpZNeHYQ,9390
40
+ cellfinder/core/tools/tools.py,sha256=fh8PAcoIGh9U5ChUUPl5a8JY2orR1DqZ3qPGHNxi-zI,9390
41
41
  cellfinder/core/train/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
42
- cellfinder/core/train/train_yml.py,sha256=9QXv2wk24G8hYskMnBij7OngEELUWySK2fH4NFbYWw4,13260
42
+ cellfinder/core/train/train_yaml.py,sha256=_6XsW82npFRcwHTJK3nUUlQfRbY7IVVAgoXYR2-_IBc,13112
43
43
  cellfinder/napari/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
44
- cellfinder/napari/curation.py,sha256=Pfif12RUIMExxPuIp9U0mW5-4QycciDlkVE8_9UMgpY,21455
45
- cellfinder/napari/input_container.py,sha256=tkm0dkPt7kSL8Xkvs1fh8M6vKWw57QLIt_wv74HFkGk,2150
44
+ cellfinder/napari/curation.py,sha256=XxrsdK6gHmxgOtmxAJaq-JmheeB4nFJNMrl-0yH--Dc,23464
45
+ cellfinder/napari/input_container.py,sha256=upTkufWF3aOr9sPPK13C2YwqQ6tygULym8oDXrRLXJs,2510
46
46
  cellfinder/napari/napari.yaml,sha256=WMR1CIAmYIVyQngbdbomTRZLvlDbb6LxsXsvTRClQnE,921
47
47
  cellfinder/napari/sample_data.py,sha256=oUST23q09MM8dxHbUCmO0AjtXG6OlR_32LLqP0EU2UA,732
48
- cellfinder/napari/utils.py,sha256=AwTs76M9azutHhHj2yuaKErDEQ5F6pFbIIakBfzen6M,3824
48
+ cellfinder/napari/utils.py,sha256=pXuEoDIUeqgDtEsQg1U7OM3ie0_9rCmxAOZgJOwU-mQ,4009
49
49
  cellfinder/napari/detect/__init__.py,sha256=BD9Bg9NTAr6yRTq2A_p58U6j4w5wbY0sdXwhPJ3MSMY,34
50
- cellfinder/napari/detect/detect.py,sha256=EC71KN0AEr49hMjvS8yzvGvfRctqKqn_lNERyx9UAPc,13810
51
- cellfinder/napari/detect/detect_containers.py,sha256=j9NTsIyyDNrhlI2dc7hvc7QlxvI1NRHlCe137v7fsPg,5467
52
- cellfinder/napari/detect/thread_worker.py,sha256=PWM3OE-FpK-dpdhaE_Gi-2lD3u8sL-SJ13mp0pMhTyI,3078
50
+ cellfinder/napari/detect/detect.py,sha256=A0FLHnWSEx1h4Lrkx5kmQY4fvgBVYoyla51kWdXcg98,17049
51
+ cellfinder/napari/detect/detect_containers.py,sha256=K4TO7KFac6jzjTt6Mvh6ey4zpO-RHzzs6a8SOfByAfY,6843
52
+ cellfinder/napari/detect/thread_worker.py,sha256=dQitk83sbY8MSx0iSROub3Wnp6nR0HlPOkFvjESm1dQ,3593
53
53
  cellfinder/napari/train/__init__.py,sha256=xo4CK-DvSecInGEc2ohcTgQYlH3iylFnGvKTCoq2WkI,35
54
- cellfinder/napari/train/train.py,sha256=zJY7zKcLqDTDtD76thmbwViEU4tTFCmXZze-zHsTpoo,5941
55
- cellfinder/napari/train/train_containers.py,sha256=1wZ_GPe7B5XsLYs5XIx4m8GMw5KeVhg6SchhPtXu4V8,4386
56
- cellfinder-1.4.1.dist-info/LICENSE,sha256=Tw8iMytIDXLSmcIUsbQmRWojstl9yOWsPCx6ZT6dZLY,1564
57
- cellfinder-1.4.1.dist-info/METADATA,sha256=kszA8Y0GjA2Wql5E472WeQQXBfQprG-JVvkx6KNGc3E,7120
58
- cellfinder-1.4.1.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
59
- cellfinder-1.4.1.dist-info/entry_points.txt,sha256=cKKjU8GPiN-TRelG2sT2JCKAcB9XDCjP6g9atE9pSoY,247
60
- cellfinder-1.4.1.dist-info/top_level.txt,sha256=jyTQzX-tDjbsMr6s-E71Oy0IKQzmHTXSk4ZhpG5EDSE,11
61
- cellfinder-1.4.1.dist-info/RECORD,,
54
+ cellfinder/napari/train/train.py,sha256=tXrB8j_c293mzhWX5iEs4FvIwV1FpZuaX1rsSP4dgDQ,5830
55
+ cellfinder/napari/train/train_containers.py,sha256=ovPl4ZiH6DUr-CGIYu-iju05z3_rtomyYnCWI6fURKc,4296
56
+ cellfinder-1.9.0.dist-info/licenses/LICENSE,sha256=Tw8iMytIDXLSmcIUsbQmRWojstl9yOWsPCx6ZT6dZLY,1564
57
+ cellfinder-1.9.0.dist-info/METADATA,sha256=EfJdieyhSLKELsEcDv6Go1w7sLfmxZ0n18fQESBQm88,8452
58
+ cellfinder-1.9.0.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
59
+ cellfinder-1.9.0.dist-info/entry_points.txt,sha256=n2n3muDgifENJtTRz1JqYStxvuprROCwmKLt-VxvEHk,248
60
+ cellfinder-1.9.0.dist-info/top_level.txt,sha256=jyTQzX-tDjbsMr6s-E71Oy0IKQzmHTXSk4ZhpG5EDSE,11
61
+ cellfinder-1.9.0.dist-info/RECORD,,
{cellfinder-1.4.1.dist-info → cellfinder-1.9.0.dist-info}/WHEEL RENAMED
@@ -1,5 +1,5 @@
1
1
  Wheel-Version: 1.0
2
- Generator: setuptools (75.8.0)
2
+ Generator: setuptools (80.10.2)
3
3
  Root-Is-Purelib: true
4
4
  Tag: py3-none-any
5
5
 
{cellfinder-1.4.1.dist-info → cellfinder-1.9.0.dist-info}/entry_points.txt RENAMED
@@ -1,7 +1,7 @@
1
1
  [console_scripts]
2
2
  cellfinder = cellfinder.cli_migration_warning:cli_catch
3
3
  cellfinder_download = cellfinder.core.download.cli:main
4
- cellfinder_train = cellfinder.core.train.train_yml:cli
4
+ cellfinder_train = cellfinder.core.train.train_yaml:cli
5
5
 
6
6
  [napari.manifest]
7
7
  cellfinder = cellfinder.napari:napari.yaml