cellfinder 1.4.0__py3-none-any.whl → 1.4.1__py3-none-any.whl

cellfinder/core/detect/filters/volume/ball_filter.py

@@ -266,22 +266,21 @@ class BallFilter:
         """
         if self.volume.shape[0]:
             if self.volume.shape[0] < self.kernel_z_size:
-                num_remaining_with_padding = 0
+                num_remaining_with_padding = self.volume.shape[0]
             else:
                 num_remaining = self.kernel_z_size - (self.middle_z_idx + 1)
                 num_remaining_with_padding = num_remaining + self.middle_z_idx
+            remaining_start = self.volume.shape[0] - num_remaining_with_padding
 
             self.volume = torch.cat(
-                [self.volume[-num_remaining_with_padding:, :, :], planes],
+                [self.volume[remaining_start:, :, :], planes],
                 dim=0,
             )
 
             if self.inside_brain_tiles is not None:
                 self.inside_brain_tiles = torch.cat(
                     [
-                        self.inside_brain_tiles[
-                            -num_remaining_with_padding:, :, :
-                        ],
+                        self.inside_brain_tiles[remaining_start:, :, :],
                         masks,
                     ],
                     dim=0,

cellfinder/napari/detect/detect.py

@@ -38,7 +38,7 @@ MIN_PLANES_ANALYSE = 0
 
 
 def get_heavy_widgets(
-    options: Dict[str, Any]
+    options: Dict[str, Any],
 ) -> Tuple[Callable, Callable, Callable]:
     # signal and other input are separated out from the main magicgui
     # parameter selections and are inserted as widget children in their own

{cellfinder-1.4.0.dist-info → cellfinder-1.4.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: cellfinder
-Version: 1.4.0
+Version: 1.4.1
 Summary: Automated 3D cell detection in large microscopy images
 Author-email: "Adam Tyson, Christian Niedworok, Charly Rousseau" <code@adamltyson.com>
 License: BSD-3-Clause

{cellfinder-1.4.0.dist-info → cellfinder-1.4.1.dist-info}/RECORD

@@ -20,7 +20,7 @@ cellfinder/core/detect/filters/plane/classical_filter.py,sha256=X5k266tbl9EHRVY5
 cellfinder/core/detect/filters/plane/plane_filter.py,sha256=6FbAjxgt39_RdGDXC_pQ9ndtZtknuHJeTWtbR8cReEA,6102
 cellfinder/core/detect/filters/plane/tile_walker.py,sha256=IiQibvWKnYlgl9h414fRklV7C2xZ0vXNmJ9t89DhYuI,4863
 cellfinder/core/detect/filters/volume/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-cellfinder/core/detect/filters/volume/ball_filter.py,sha256=qIDo206f558B46tpxrOGXasP8VE6pZxju-duvhPRuNA,14440
+cellfinder/core/detect/filters/volume/ball_filter.py,sha256=aarEBD6z3ejhNMFdKqKEHi9zLPkopqA3HkzV9RGd7BA,14461
 cellfinder/core/detect/filters/volume/structure_detection.py,sha256=AIHq-5u5VFpKBBLEsE1Py-MlndbL8T0zXu0Bq2CI16Y,12916
 cellfinder/core/detect/filters/volume/structure_splitting.py,sha256=0LGE8cQ6EJIsKqWWmd087Q3At8m-PUDmmPjCZKV1TdY,10138
 cellfinder/core/detect/filters/volume/volume_filter.py,sha256=o9_4IsITedhqkhfwRsIhE53_zLNcFjgQzXbMMddH_q4,20544
@@ -47,15 +47,15 @@ cellfinder/napari/napari.yaml,sha256=WMR1CIAmYIVyQngbdbomTRZLvlDbb6LxsXsvTRClQnE
 cellfinder/napari/sample_data.py,sha256=oUST23q09MM8dxHbUCmO0AjtXG6OlR_32LLqP0EU2UA,732
 cellfinder/napari/utils.py,sha256=AwTs76M9azutHhHj2yuaKErDEQ5F6pFbIIakBfzen6M,3824
 cellfinder/napari/detect/__init__.py,sha256=BD9Bg9NTAr6yRTq2A_p58U6j4w5wbY0sdXwhPJ3MSMY,34
-cellfinder/napari/detect/detect.py,sha256=VB3SLZvqJhjuypjpaZuV9JscQ-sE8yVHG8RzEsZWfeA,13809
+cellfinder/napari/detect/detect.py,sha256=EC71KN0AEr49hMjvS8yzvGvfRctqKqn_lNERyx9UAPc,13810
 cellfinder/napari/detect/detect_containers.py,sha256=j9NTsIyyDNrhlI2dc7hvc7QlxvI1NRHlCe137v7fsPg,5467
 cellfinder/napari/detect/thread_worker.py,sha256=PWM3OE-FpK-dpdhaE_Gi-2lD3u8sL-SJ13mp0pMhTyI,3078
 cellfinder/napari/train/__init__.py,sha256=xo4CK-DvSecInGEc2ohcTgQYlH3iylFnGvKTCoq2WkI,35
 cellfinder/napari/train/train.py,sha256=zJY7zKcLqDTDtD76thmbwViEU4tTFCmXZze-zHsTpoo,5941
 cellfinder/napari/train/train_containers.py,sha256=1wZ_GPe7B5XsLYs5XIx4m8GMw5KeVhg6SchhPtXu4V8,4386
-cellfinder-1.4.0.dist-info/LICENSE,sha256=Tw8iMytIDXLSmcIUsbQmRWojstl9yOWsPCx6ZT6dZLY,1564
-cellfinder-1.4.0.dist-info/METADATA,sha256=F6FEdBDIqSMoWOEECxyqGaveqC-G1ZnuTEsDEj8NyjQ,7120
-cellfinder-1.4.0.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
-cellfinder-1.4.0.dist-info/entry_points.txt,sha256=cKKjU8GPiN-TRelG2sT2JCKAcB9XDCjP6g9atE9pSoY,247
-cellfinder-1.4.0.dist-info/top_level.txt,sha256=jyTQzX-tDjbsMr6s-E71Oy0IKQzmHTXSk4ZhpG5EDSE,11
-cellfinder-1.4.0.dist-info/RECORD,,
+cellfinder-1.4.1.dist-info/LICENSE,sha256=Tw8iMytIDXLSmcIUsbQmRWojstl9yOWsPCx6ZT6dZLY,1564
+cellfinder-1.4.1.dist-info/METADATA,sha256=kszA8Y0GjA2Wql5E472WeQQXBfQprG-JVvkx6KNGc3E,7120
+cellfinder-1.4.1.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
+cellfinder-1.4.1.dist-info/entry_points.txt,sha256=cKKjU8GPiN-TRelG2sT2JCKAcB9XDCjP6g9atE9pSoY,247
+cellfinder-1.4.1.dist-info/top_level.txt,sha256=jyTQzX-tDjbsMr6s-E71Oy0IKQzmHTXSk4ZhpG5EDSE,11
+cellfinder-1.4.1.dist-info/RECORD,,