cellfinder 1.3.1__py3-none-any.whl → 1.3.2__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- cellfinder/napari/curation.py +2 -2
- {cellfinder-1.3.1.dist-info → cellfinder-1.3.2.dist-info}/METADATA +23 -23
- {cellfinder-1.3.1.dist-info → cellfinder-1.3.2.dist-info}/RECORD +7 -7
- {cellfinder-1.3.1.dist-info → cellfinder-1.3.2.dist-info}/WHEEL +1 -1
- {cellfinder-1.3.1.dist-info → cellfinder-1.3.2.dist-info}/LICENSE +0 -0
- {cellfinder-1.3.1.dist-info → cellfinder-1.3.2.dist-info}/entry_points.txt +0 -0
- {cellfinder-1.3.1.dist-info → cellfinder-1.3.2.dist-info}/top_level.txt +0 -0
cellfinder/napari/curation.py
CHANGED
|
@@ -113,7 +113,7 @@ class CurationWidget(QWidget):
|
|
|
113
113
|
layer_names = [
|
|
114
114
|
layer.name
|
|
115
115
|
for layer in self.viewer.layers
|
|
116
|
-
if
|
|
116
|
+
if isinstance(layer, layer_type)
|
|
117
117
|
]
|
|
118
118
|
|
|
119
119
|
if layer_names:
|
|
@@ -329,7 +329,7 @@ class CurationWidget(QWidget):
|
|
|
329
329
|
|
|
330
330
|
if len(self.viewer.layers.selection) == 1:
|
|
331
331
|
layer = list(self.viewer.layers.selection)[0]
|
|
332
|
-
if
|
|
332
|
+
if isinstance(layer, napari.layers.Points):
|
|
333
333
|
if len(layer.data) > 0:
|
|
334
334
|
if point_type == "cell":
|
|
335
335
|
destination_layer = self.training_data_cell_layer
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.1
|
|
2
2
|
Name: cellfinder
|
|
3
|
-
Version: 1.3.
|
|
3
|
+
Version: 1.3.2
|
|
4
4
|
Summary: Automated 3D cell detection in large microscopy images
|
|
5
5
|
Author-email: "Adam Tyson, Christian Niedworok, Charly Rousseau" <code@adamltyson.com>
|
|
6
6
|
License: BSD-3-Clause
|
|
@@ -23,37 +23,37 @@ Classifier: Topic :: Scientific/Engineering :: Image Recognition
|
|
|
23
23
|
Requires-Python: >=3.10
|
|
24
24
|
Description-Content-Type: text/markdown
|
|
25
25
|
License-File: LICENSE
|
|
26
|
-
Requires-Dist: brainglobe-utils
|
|
27
|
-
Requires-Dist: brainglobe-napari-io
|
|
26
|
+
Requires-Dist: brainglobe-utils>=0.5.0
|
|
27
|
+
Requires-Dist: brainglobe-napari-io>=0.3.4
|
|
28
28
|
Requires-Dist: dask[array]
|
|
29
|
-
Requires-Dist: fancylog
|
|
29
|
+
Requires-Dist: fancylog>=0.0.7
|
|
30
30
|
Requires-Dist: natsort
|
|
31
31
|
Requires-Dist: numba
|
|
32
|
-
Requires-Dist: numpy
|
|
32
|
+
Requires-Dist: numpy<2
|
|
33
33
|
Requires-Dist: scikit-image
|
|
34
34
|
Requires-Dist: scikit-learn
|
|
35
|
-
Requires-Dist: keras
|
|
36
|
-
Requires-Dist: torch
|
|
35
|
+
Requires-Dist: keras>=3.0.0
|
|
36
|
+
Requires-Dist: torch>=2.1.0
|
|
37
37
|
Requires-Dist: tifffile
|
|
38
38
|
Requires-Dist: tqdm
|
|
39
39
|
Provides-Extra: dev
|
|
40
|
-
Requires-Dist: black
|
|
41
|
-
Requires-Dist: pre-commit
|
|
42
|
-
Requires-Dist: pyinstrument
|
|
43
|
-
Requires-Dist: pytest-cov
|
|
44
|
-
Requires-Dist: pytest-mock
|
|
45
|
-
Requires-Dist: pytest-qt
|
|
46
|
-
Requires-Dist: pytest-timeout
|
|
47
|
-
Requires-Dist: pytest
|
|
48
|
-
Requires-Dist: tox
|
|
40
|
+
Requires-Dist: black; extra == "dev"
|
|
41
|
+
Requires-Dist: pre-commit; extra == "dev"
|
|
42
|
+
Requires-Dist: pyinstrument; extra == "dev"
|
|
43
|
+
Requires-Dist: pytest-cov; extra == "dev"
|
|
44
|
+
Requires-Dist: pytest-mock; extra == "dev"
|
|
45
|
+
Requires-Dist: pytest-qt; extra == "dev"
|
|
46
|
+
Requires-Dist: pytest-timeout; extra == "dev"
|
|
47
|
+
Requires-Dist: pytest; extra == "dev"
|
|
48
|
+
Requires-Dist: tox; extra == "dev"
|
|
49
49
|
Provides-Extra: napari
|
|
50
|
-
Requires-Dist: brainglobe-napari-io
|
|
51
|
-
Requires-Dist: magicgui
|
|
52
|
-
Requires-Dist: napari-ndtiffs
|
|
53
|
-
Requires-Dist: napari-plugin-engine
|
|
54
|
-
Requires-Dist: napari[pyqt5]
|
|
55
|
-
Requires-Dist: pooch
|
|
56
|
-
Requires-Dist: qtpy
|
|
50
|
+
Requires-Dist: brainglobe-napari-io; extra == "napari"
|
|
51
|
+
Requires-Dist: magicgui; extra == "napari"
|
|
52
|
+
Requires-Dist: napari-ndtiffs; extra == "napari"
|
|
53
|
+
Requires-Dist: napari-plugin-engine>=0.1.4; extra == "napari"
|
|
54
|
+
Requires-Dist: napari[pyqt5]; extra == "napari"
|
|
55
|
+
Requires-Dist: pooch>=1; extra == "napari"
|
|
56
|
+
Requires-Dist: qtpy; extra == "napari"
|
|
57
57
|
|
|
58
58
|
[](https://pypi.org/project/cellfinder)
|
|
59
59
|
[](https://pypi.org/project/cellfinder)
|
|
@@ -39,7 +39,7 @@ cellfinder/core/tools/tools.py,sha256=G8oDGNRuWkzEJDnnC4r3SNGgpVbqbelCZR5ODk9JRz
|
|
|
39
39
|
cellfinder/core/train/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
|
40
40
|
cellfinder/core/train/train_yml.py,sha256=9QXv2wk24G8hYskMnBij7OngEELUWySK2fH4NFbYWw4,13260
|
|
41
41
|
cellfinder/napari/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
|
42
|
-
cellfinder/napari/curation.py,sha256=
|
|
42
|
+
cellfinder/napari/curation.py,sha256=Pfif12RUIMExxPuIp9U0mW5-4QycciDlkVE8_9UMgpY,21455
|
|
43
43
|
cellfinder/napari/input_container.py,sha256=tkm0dkPt7kSL8Xkvs1fh8M6vKWw57QLIt_wv74HFkGk,2150
|
|
44
44
|
cellfinder/napari/napari.yaml,sha256=WMR1CIAmYIVyQngbdbomTRZLvlDbb6LxsXsvTRClQnE,921
|
|
45
45
|
cellfinder/napari/sample_data.py,sha256=oUST23q09MM8dxHbUCmO0AjtXG6OlR_32LLqP0EU2UA,732
|
|
@@ -51,9 +51,9 @@ cellfinder/napari/detect/thread_worker.py,sha256=PWM3OE-FpK-dpdhaE_Gi-2lD3u8sL-S
|
|
|
51
51
|
cellfinder/napari/train/__init__.py,sha256=xo4CK-DvSecInGEc2ohcTgQYlH3iylFnGvKTCoq2WkI,35
|
|
52
52
|
cellfinder/napari/train/train.py,sha256=zJY7zKcLqDTDtD76thmbwViEU4tTFCmXZze-zHsTpoo,5941
|
|
53
53
|
cellfinder/napari/train/train_containers.py,sha256=1wZ_GPe7B5XsLYs5XIx4m8GMw5KeVhg6SchhPtXu4V8,4386
|
|
54
|
-
cellfinder-1.3.
|
|
55
|
-
cellfinder-1.3.
|
|
56
|
-
cellfinder-1.3.
|
|
57
|
-
cellfinder-1.3.
|
|
58
|
-
cellfinder-1.3.
|
|
59
|
-
cellfinder-1.3.
|
|
54
|
+
cellfinder-1.3.2.dist-info/LICENSE,sha256=Tw8iMytIDXLSmcIUsbQmRWojstl9yOWsPCx6ZT6dZLY,1564
|
|
55
|
+
cellfinder-1.3.2.dist-info/METADATA,sha256=ZFTUiun0PsZyqoFqEE-FySxAPzYDt4VhHvn5T3nbICE,7076
|
|
56
|
+
cellfinder-1.3.2.dist-info/WHEEL,sha256=R0nc6qTxuoLk7ShA2_Y-UWkN8ZdfDBG2B6Eqpz2WXbs,91
|
|
57
|
+
cellfinder-1.3.2.dist-info/entry_points.txt,sha256=cKKjU8GPiN-TRelG2sT2JCKAcB9XDCjP6g9atE9pSoY,247
|
|
58
|
+
cellfinder-1.3.2.dist-info/top_level.txt,sha256=jyTQzX-tDjbsMr6s-E71Oy0IKQzmHTXSk4ZhpG5EDSE,11
|
|
59
|
+
cellfinder-1.3.2.dist-info/RECORD,,
|
|
File without changes
|
|
File without changes
|
|
File without changes
|