cellfinder 1.3.0rc0__py3-none-any.whl → 1.3.0rc1__py3-none-any.whl

cellfinder/__init__.py

@@ -27,7 +27,6 @@ except PackageNotFoundError as e:
 # Set the Keras backend to torch
 os.environ["KERAS_BACKEND"] = "torch"
 
-__author__ = "Adam Tyson, Christian Niedworok, Charly Rousseau"
 __license__ = "BSD-3-Clause"
 
 DEFAULT_CELLFINDER_DIRECTORY = Path.home() / ".brainglobe" / "cellfinder"

cellfinder/core/tools/system.py

@@ -1,5 +1,6 @@
 from pathlib import Path
 
+import keras
 from brainglobe_utils.general.exceptions import CommandLineInputError
 
 
@@ -80,3 +81,12 @@ def memory_in_bytes(memory_amount, unit):
         )
     else:
         return memory_amount * 10 ** supported_units[unit]
+
+
+def force_cpu():
+    """
+    Forces the CPU to be used, even if a GPU is available
+    """
+    keras.src.backend.common.global_state.set_global_attribute(
+        "torch_device", "cpu"
+    )

{cellfinder-1.3.0rc0.dist-info → cellfinder-1.3.0rc1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: cellfinder
-Version: 1.3.0rc0
+Version: 1.3.0rc1
 Summary: Automated 3D cell detection in large microscopy images
 Author-email: "Adam Tyson, Christian Niedworok, Charly Rousseau" <code@adamltyson.com>
 License: BSD-3-Clause
@@ -18,6 +18,7 @@ Classifier: Programming Language :: Python
 Classifier: Programming Language :: Python :: 3
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
 Classifier: Topic :: Scientific/Engineering :: Image Recognition
 Requires-Python: >=3.9
 Description-Content-Type: text/markdown

cellfinder-1.3.0rc1.dist-info/RECORD

@@ -0,0 +1,59 @@
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cellfinder/core/config/cellfinder.conf.custom

@@ -1,3 +0,0 @@
-[model]
-    model_path = '/home/adam/.cellfinder/model_weights/resnet50_tv.h5'
-    model_type = '50-layer'

cellfinder-1.3.0rc0.dist-info/RECORD

@@ -1,211 +0,0 @@
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