cellfinder 1.2.0__py3-none-any.whl → 1.3.0rc0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (168) hide show
  1. cellfinder/__init__.py +17 -11
  2. cellfinder/__pycache__/__init__.cpython-310.pyc +0 -0
  3. cellfinder/__pycache__/__init__.cpython-311.pyc +0 -0
  4. cellfinder/__pycache__/__init__.cpython-312.pyc +0 -0
  5. cellfinder/core/__pycache__/__init__.cpython-310.pyc +0 -0
  6. cellfinder/core/__pycache__/__init__.cpython-311.pyc +0 -0
  7. cellfinder/core/__pycache__/__init__.cpython-312.pyc +0 -0
  8. cellfinder/core/__pycache__/main.cpython-310.pyc +0 -0
  9. cellfinder/core/__pycache__/main.cpython-311.pyc +0 -0
  10. cellfinder/core/__pycache__/main.cpython-312.pyc +0 -0
  11. cellfinder/core/__pycache__/types.cpython-310.pyc +0 -0
  12. cellfinder/core/__pycache__/types.cpython-311.pyc +0 -0
  13. cellfinder/core/__pycache__/types.cpython-312.pyc +0 -0
  14. cellfinder/core/classify/__pycache__/__init__.cpython-310.pyc +0 -0
  15. cellfinder/core/classify/__pycache__/__init__.cpython-311.pyc +0 -0
  16. cellfinder/core/classify/__pycache__/__init__.cpython-312.pyc +0 -0
  17. cellfinder/core/classify/__pycache__/augment.cpython-310.pyc +0 -0
  18. cellfinder/core/classify/__pycache__/augment.cpython-311.pyc +0 -0
  19. cellfinder/core/classify/__pycache__/augment.cpython-312.pyc +0 -0
  20. cellfinder/core/classify/__pycache__/classify.cpython-310.pyc +0 -0
  21. cellfinder/core/classify/__pycache__/classify.cpython-311.pyc +0 -0
  22. cellfinder/core/classify/__pycache__/classify.cpython-312.pyc +0 -0
  23. cellfinder/core/classify/__pycache__/cube_generator.cpython-310.pyc +0 -0
  24. cellfinder/core/classify/__pycache__/cube_generator.cpython-311.pyc +0 -0
  25. cellfinder/core/classify/__pycache__/cube_generator.cpython-312.pyc +0 -0
  26. cellfinder/core/classify/__pycache__/resnet.cpython-310.pyc +0 -0
  27. cellfinder/core/classify/__pycache__/resnet.cpython-311.pyc +0 -0
  28. cellfinder/core/classify/__pycache__/resnet.cpython-312.pyc +0 -0
  29. cellfinder/core/classify/__pycache__/tools.cpython-310.pyc +0 -0
  30. cellfinder/core/classify/__pycache__/tools.cpython-311.pyc +0 -0
  31. cellfinder/core/classify/__pycache__/tools.cpython-312.pyc +0 -0
  32. cellfinder/core/classify/classify.py +5 -6
  33. cellfinder/core/classify/cube_generator.py +25 -9
  34. cellfinder/core/classify/resnet.py +9 -6
  35. cellfinder/core/classify/tools.py +13 -11
  36. cellfinder/core/config/cellfinder.conf.custom +3 -0
  37. cellfinder/core/detect/__pycache__/__init__.cpython-310.pyc +0 -0
  38. cellfinder/core/detect/__pycache__/__init__.cpython-311.pyc +0 -0
  39. cellfinder/core/detect/__pycache__/__init__.cpython-312.pyc +0 -0
  40. cellfinder/core/detect/__pycache__/detect.cpython-310.pyc +0 -0
  41. cellfinder/core/detect/__pycache__/detect.cpython-311.pyc +0 -0
  42. cellfinder/core/detect/__pycache__/detect.cpython-312.pyc +0 -0
  43. cellfinder/core/detect/filters/__pycache__/__init__.cpython-310.pyc +0 -0
  44. cellfinder/core/detect/filters/__pycache__/__init__.cpython-311.pyc +0 -0
  45. cellfinder/core/detect/filters/__pycache__/__init__.cpython-312.pyc +0 -0
  46. cellfinder/core/detect/filters/__pycache__/setup_filters.cpython-310.pyc +0 -0
  47. cellfinder/core/detect/filters/__pycache__/setup_filters.cpython-311.pyc +0 -0
  48. cellfinder/core/detect/filters/__pycache__/setup_filters.cpython-312.pyc +0 -0
  49. cellfinder/core/detect/filters/plane/__pycache__/__init__.cpython-310.pyc +0 -0
  50. cellfinder/core/detect/filters/plane/__pycache__/__init__.cpython-311.pyc +0 -0
  51. cellfinder/core/detect/filters/plane/__pycache__/__init__.cpython-312.pyc +0 -0
  52. cellfinder/core/detect/filters/plane/__pycache__/classical_filter.cpython-310.pyc +0 -0
  53. cellfinder/core/detect/filters/plane/__pycache__/classical_filter.cpython-311.pyc +0 -0
  54. cellfinder/core/detect/filters/plane/__pycache__/classical_filter.cpython-312.pyc +0 -0
  55. cellfinder/core/detect/filters/plane/__pycache__/plane_filter.cpython-310.pyc +0 -0
  56. cellfinder/core/detect/filters/plane/__pycache__/plane_filter.cpython-311.pyc +0 -0
  57. cellfinder/core/detect/filters/plane/__pycache__/plane_filter.cpython-312.pyc +0 -0
  58. cellfinder/core/detect/filters/plane/__pycache__/tile_walker.cpython-310.pyc +0 -0
  59. cellfinder/core/detect/filters/plane/__pycache__/tile_walker.cpython-311.pyc +0 -0
  60. cellfinder/core/detect/filters/plane/__pycache__/tile_walker.cpython-312.pyc +0 -0
  61. cellfinder/core/detect/filters/volume/__pycache__/__init__.cpython-310.pyc +0 -0
  62. cellfinder/core/detect/filters/volume/__pycache__/__init__.cpython-311.pyc +0 -0
  63. cellfinder/core/detect/filters/volume/__pycache__/__init__.cpython-312.pyc +0 -0
  64. cellfinder/core/detect/filters/volume/__pycache__/ball_filter._cube_overlaps-199.py310.1.nbc +0 -0
  65. cellfinder/core/detect/filters/volume/__pycache__/ball_filter._cube_overlaps-199.py310.nbi +0 -0
  66. cellfinder/core/detect/filters/volume/__pycache__/ball_filter._cube_overlaps-263.py310.1.nbc +0 -0
  67. cellfinder/core/detect/filters/volume/__pycache__/ball_filter._cube_overlaps-263.py310.2.nbc +0 -0
  68. cellfinder/core/detect/filters/volume/__pycache__/ball_filter._cube_overlaps-263.py310.nbi +0 -0
  69. cellfinder/core/detect/filters/volume/__pycache__/ball_filter._cube_overlaps-263.py311.1.nbc +0 -0
  70. cellfinder/core/detect/filters/volume/__pycache__/ball_filter._cube_overlaps-263.py311.2.nbc +0 -0
  71. cellfinder/core/detect/filters/volume/__pycache__/ball_filter._cube_overlaps-263.py311.nbi +0 -0
  72. cellfinder/core/detect/filters/volume/__pycache__/ball_filter._cube_overlaps-263.py312.1.nbc +0 -0
  73. cellfinder/core/detect/filters/volume/__pycache__/ball_filter._cube_overlaps-263.py312.2.nbc +0 -0
  74. cellfinder/core/detect/filters/volume/__pycache__/ball_filter._cube_overlaps-263.py312.nbi +0 -0
  75. cellfinder/core/detect/filters/volume/__pycache__/ball_filter.cpython-310.pyc +0 -0
  76. cellfinder/core/detect/filters/volume/__pycache__/ball_filter.cpython-311.pyc +0 -0
  77. cellfinder/core/detect/filters/volume/__pycache__/ball_filter.cpython-312.pyc +0 -0
  78. cellfinder/core/detect/filters/volume/__pycache__/structure_detection.cpython-310.pyc +0 -0
  79. cellfinder/core/detect/filters/volume/__pycache__/structure_detection.cpython-311.pyc +0 -0
  80. cellfinder/core/detect/filters/volume/__pycache__/structure_detection.cpython-312.pyc +0 -0
  81. cellfinder/core/detect/filters/volume/__pycache__/structure_splitting.cpython-310.pyc +0 -0
  82. cellfinder/core/detect/filters/volume/__pycache__/structure_splitting.cpython-311.pyc +0 -0
  83. cellfinder/core/detect/filters/volume/__pycache__/structure_splitting.cpython-312.pyc +0 -0
  84. cellfinder/core/detect/filters/volume/__pycache__/volume_filter.cpython-310.pyc +0 -0
  85. cellfinder/core/detect/filters/volume/__pycache__/volume_filter.cpython-311.pyc +0 -0
  86. cellfinder/core/detect/filters/volume/__pycache__/volume_filter.cpython-312.pyc +0 -0
  87. cellfinder/core/download/__pycache__/__init__.cpython-310.pyc +0 -0
  88. cellfinder/core/download/__pycache__/__init__.cpython-311.pyc +0 -0
  89. cellfinder/core/download/__pycache__/__init__.cpython-312.pyc +0 -0
  90. cellfinder/core/download/__pycache__/cli.cpython-310.pyc +0 -0
  91. cellfinder/core/download/__pycache__/cli.cpython-312.pyc +0 -0
  92. cellfinder/core/download/__pycache__/download.cpython-310.pyc +0 -0
  93. cellfinder/core/download/__pycache__/download.cpython-311.pyc +0 -0
  94. cellfinder/core/download/__pycache__/download.cpython-312.pyc +0 -0
  95. cellfinder/core/main.py +2 -27
  96. cellfinder/core/tools/__pycache__/IO.cpython-310.pyc +0 -0
  97. cellfinder/core/tools/__pycache__/__init__.cpython-310.pyc +0 -0
  98. cellfinder/core/tools/__pycache__/__init__.cpython-311.pyc +0 -0
  99. cellfinder/core/tools/__pycache__/__init__.cpython-312.pyc +0 -0
  100. cellfinder/core/tools/__pycache__/array_operations.cpython-310.pyc +0 -0
  101. cellfinder/core/tools/__pycache__/array_operations.cpython-311.pyc +0 -0
  102. cellfinder/core/tools/__pycache__/array_operations.cpython-312.pyc +0 -0
  103. cellfinder/core/tools/__pycache__/geometry.cpython-310.pyc +0 -0
  104. cellfinder/core/tools/__pycache__/geometry.cpython-311.pyc +0 -0
  105. cellfinder/core/tools/__pycache__/geometry.cpython-312.pyc +0 -0
  106. cellfinder/core/tools/__pycache__/image_processing.cpython-310.pyc +0 -0
  107. cellfinder/core/tools/__pycache__/image_processing.cpython-312.pyc +0 -0
  108. cellfinder/core/tools/__pycache__/prep.cpython-310.pyc +0 -0
  109. cellfinder/core/tools/__pycache__/prep.cpython-311.pyc +0 -0
  110. cellfinder/core/tools/__pycache__/prep.cpython-312.pyc +0 -0
  111. cellfinder/core/tools/__pycache__/source_files.cpython-310.pyc +0 -0
  112. cellfinder/core/tools/__pycache__/source_files.cpython-311.pyc +0 -0
  113. cellfinder/core/tools/__pycache__/source_files.cpython-312.pyc +0 -0
  114. cellfinder/core/tools/__pycache__/system.cpython-310.pyc +0 -0
  115. cellfinder/core/tools/__pycache__/system.cpython-312.pyc +0 -0
  116. cellfinder/core/tools/__pycache__/tf.cpython-310.pyc +0 -0
  117. cellfinder/core/tools/__pycache__/tiff.cpython-310.pyc +0 -0
  118. cellfinder/core/tools/__pycache__/tiff.cpython-312.pyc +0 -0
  119. cellfinder/core/tools/__pycache__/tools.cpython-310.pyc +0 -0
  120. cellfinder/core/tools/__pycache__/tools.cpython-311.pyc +0 -0
  121. cellfinder/core/tools/__pycache__/tools.cpython-312.pyc +0 -0
  122. cellfinder/core/tools/prep.py +1 -10
  123. cellfinder/core/train/__pycache__/__init__.cpython-310.pyc +0 -0
  124. cellfinder/core/train/__pycache__/__init__.cpython-311.pyc +0 -0
  125. cellfinder/core/train/__pycache__/__init__.cpython-312.pyc +0 -0
  126. cellfinder/core/train/__pycache__/train_yml.cpython-310.pyc +0 -0
  127. cellfinder/core/train/__pycache__/train_yml.cpython-311.pyc +0 -0
  128. cellfinder/core/train/__pycache__/train_yml.cpython-312.pyc +0 -0
  129. cellfinder/core/train/train_yml.py +25 -21
  130. cellfinder/napari/__pycache__/__init__.cpython-310.pyc +0 -0
  131. cellfinder/napari/__pycache__/__init__.cpython-311.pyc +0 -0
  132. cellfinder/napari/__pycache__/__init__.cpython-312.pyc +0 -0
  133. cellfinder/napari/__pycache__/curation.cpython-310.pyc +0 -0
  134. cellfinder/napari/__pycache__/curation.cpython-312.pyc +0 -0
  135. cellfinder/napari/__pycache__/input_container.cpython-310.pyc +0 -0
  136. cellfinder/napari/__pycache__/input_container.cpython-311.pyc +0 -0
  137. cellfinder/napari/__pycache__/input_container.cpython-312.pyc +0 -0
  138. cellfinder/napari/__pycache__/sample_data.cpython-310.pyc +0 -0
  139. cellfinder/napari/__pycache__/sample_data.cpython-312.pyc +0 -0
  140. cellfinder/napari/__pycache__/utils.cpython-310.pyc +0 -0
  141. cellfinder/napari/__pycache__/utils.cpython-311.pyc +0 -0
  142. cellfinder/napari/__pycache__/utils.cpython-312.pyc +0 -0
  143. cellfinder/napari/detect/__pycache__/__init__.cpython-310.pyc +0 -0
  144. cellfinder/napari/detect/__pycache__/__init__.cpython-311.pyc +0 -0
  145. cellfinder/napari/detect/__pycache__/__init__.cpython-312.pyc +0 -0
  146. cellfinder/napari/detect/__pycache__/detect.cpython-310.pyc +0 -0
  147. cellfinder/napari/detect/__pycache__/detect.cpython-311.pyc +0 -0
  148. cellfinder/napari/detect/__pycache__/detect.cpython-312.pyc +0 -0
  149. cellfinder/napari/detect/__pycache__/detect_containers.cpython-310.pyc +0 -0
  150. cellfinder/napari/detect/__pycache__/detect_containers.cpython-311.pyc +0 -0
  151. cellfinder/napari/detect/__pycache__/detect_containers.cpython-312.pyc +0 -0
  152. cellfinder/napari/detect/__pycache__/thread_worker.cpython-310.pyc +0 -0
  153. cellfinder/napari/detect/__pycache__/thread_worker.cpython-311.pyc +0 -0
  154. cellfinder/napari/detect/__pycache__/thread_worker.cpython-312.pyc +0 -0
  155. cellfinder/napari/train/__pycache__/__init__.cpython-310.pyc +0 -0
  156. cellfinder/napari/train/__pycache__/__init__.cpython-312.pyc +0 -0
  157. cellfinder/napari/train/__pycache__/train.cpython-310.pyc +0 -0
  158. cellfinder/napari/train/__pycache__/train.cpython-312.pyc +0 -0
  159. cellfinder/napari/train/__pycache__/train_containers.cpython-310.pyc +0 -0
  160. cellfinder/napari/train/__pycache__/train_containers.cpython-312.pyc +0 -0
  161. {cellfinder-1.2.0.dist-info → cellfinder-1.3.0rc0.dist-info}/METADATA +3 -3
  162. cellfinder-1.3.0rc0.dist-info/RECORD +211 -0
  163. cellfinder/core/tools/tf.py +0 -46
  164. cellfinder-1.2.0.dist-info/RECORD +0 -60
  165. {cellfinder-1.2.0.dist-info → cellfinder-1.3.0rc0.dist-info}/LICENSE +0 -0
  166. {cellfinder-1.2.0.dist-info → cellfinder-1.3.0rc0.dist-info}/WHEEL +0 -0
  167. {cellfinder-1.2.0.dist-info → cellfinder-1.3.0rc0.dist-info}/entry_points.txt +0 -0
  168. {cellfinder-1.2.0.dist-info → cellfinder-1.3.0rc0.dist-info}/top_level.txt +0 -0
cellfinder-1.2.0.dist-info/RECORD DELETED
@@ -1,60 +0,0 @@
1
- cellfinder/__init__.py,sha256=7H9UKFWCk-TNkFLwk-D4EVU5-rJZsGxfo0qcaFVcfKY,1035
2
- cellfinder/cli_migration_warning.py,sha256=gPtNrtnXvWpl5q0k_EGAQZg0DwcpCmuBTgpg56n5NfA,1578
3
- cellfinder/core/__init__.py,sha256=pRFuQsl78HEK0S6gvhJw70QLbjjSBzP-GFO0AtVaGtk,62
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- cellfinder/core/main.py,sha256=Y-4Wt9d9K7o2l3IO7acZbtNuhqZzF5UU-rMJksb6k94,4392
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- cellfinder/core/types.py,sha256=lTqWE4v0SMM0qLAZJdyAzqV1nLgDtobEpglNJcXt160,106
6
- cellfinder/core/classify/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
7
- cellfinder/core/classify/augment.py,sha256=8dMbM7KhimM6NMgdMC53oHoCfYj1CIB-h3Yk8CZAxPw,6321
8
- cellfinder/core/classify/classify.py,sha256=y4EnHX3IpAUAfhGScoJGv2hLLpy6OtmGvkqxAow3_Kw,3046
9
- cellfinder/core/classify/cube_generator.py,sha256=4zMaa7bb7vr1QxBFpzqqitnWaNdzgEzZ2gt2xFeN37A,16586
10
- cellfinder/core/classify/resnet.py,sha256=976Qt0li7ySYx_w2m9QfRMaDAc0rEkA8rO9SYP5a6uw,10057
11
- cellfinder/core/classify/tools.py,sha256=UqABKS9KnkwR3PIhGRl7xHJbADP0mgVRSxXI5dybpqA,2547
12
- cellfinder/core/config/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
13
- cellfinder/core/config/cellfinder.conf,sha256=5i8axif7ekMutKDiVnZRs-LiJrgVQljg_beltidqtNk,56
14
- cellfinder/core/detect/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
15
- cellfinder/core/detect/detect.py,sha256=iEYaYuYCSR4VJXmlFbEE1ti9Pjpv6m4rSfFILSOYmhE,9592
16
- cellfinder/core/detect/filters/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
17
- cellfinder/core/detect/filters/setup_filters.py,sha256=sUyZ2dKbfwhn4YTq3kLVTHkckZZ460AVozLfoz7hJK8,2084
18
- cellfinder/core/detect/filters/plane/__init__.py,sha256=lybcPbVDnurEQeq2FiLq0zR8p_ztarQOlajhdh1Q2-4,40
19
- cellfinder/core/detect/filters/plane/classical_filter.py,sha256=Nton_nrvv6LhNlK10HnS0TIHsjapBiMJPURgzYh2myY,1331
20
- cellfinder/core/detect/filters/plane/plane_filter.py,sha256=PWcAHDKB3qn3i9aSmQzUTEi3tgmccrf24DipjnYbOg0,2746
21
- cellfinder/core/detect/filters/plane/tile_walker.py,sha256=lhKrq-MB35bR0_JYgj7WMR4otuaZ6XRDDhJhKyH1yS8,3001
22
- cellfinder/core/detect/filters/volume/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
23
- cellfinder/core/detect/filters/volume/ball_filter.py,sha256=ZEg8FNty-VD5N9j4FLZ18G-BuSvxjHs2-QTblwKcZgw,13894
24
- cellfinder/core/detect/filters/volume/structure_detection.py,sha256=mTHi0_A9FCK39I6fZm2dfMpDxIkfaidOIf6eCjTw-70,11307
25
- cellfinder/core/detect/filters/volume/structure_splitting.py,sha256=XzTYguVT8VdTu2h4-Jdt5Yyeu8VBYmdRo5jmwwLwuck,7660
26
- cellfinder/core/detect/filters/volume/volume_filter.py,sha256=BJ8bStlNvMWsGlBekeqXpS8d9YKoLe3ifMfrEPpva2Q,7035
27
- cellfinder/core/download/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
28
- cellfinder/core/download/cli.py,sha256=X9L9ZIkWqs58hX8G8q_0AKN4gk8BhydGxI9nLpdHQQE,1764
29
- cellfinder/core/download/download.py,sha256=YQP4NMM9Xt0rECRJEV5z6RCZNi5uCFhohFnDreH0qHA,3277
30
- cellfinder/core/tools/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
31
- cellfinder/core/tools/array_operations.py,sha256=LDbqWA_N2YtxeKS877QYdJRL2FCMC1R1ExJtdb6-vEA,3371
32
- cellfinder/core/tools/geometry.py,sha256=xlEQQmVQ9jcXqRzUqU554P8VxkaWkc5J_YhjkkKlI0Q,1124
33
- cellfinder/core/tools/image_processing.py,sha256=z27bGjf3Iv3G4Nt1OYzpEnIYQNc4nNomj_QitqvZB78,2269
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- cellfinder/core/tools/prep.py,sha256=hGWwXxeP88ahp6ji2bkBu9FOz8BmrZsVwI-CEv4qxQ4,2473
35
- cellfinder/core/tools/source_files.py,sha256=vvwsIMe1ULKvXg_x22L75iqvCyMjEbUjJsDFQk3GYzY,856
36
- cellfinder/core/tools/system.py,sha256=6iSOLrz2mtKgOIdwjp_VS0-74XQCuaQYCvWAViJgEus,2232
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- cellfinder/core/tools/tf.py,sha256=jNU97-gIB51rLube9EoZ9bREkbqWRk-xPZhDTXG_jE4,1713
38
- cellfinder/core/tools/tiff.py,sha256=NzIz6wq2GzxmcIhawFMwZADe-uQO2rIG46H7xkpGKLs,2899
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- cellfinder/core/tools/tools.py,sha256=G8oDGNRuWkzEJDnnC4r3SNGgpVbqbelCZR5ODk9JRzs,4867
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- cellfinder/core/train/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
41
- cellfinder/core/train/train_yml.py,sha256=0iiROBdxNoMyMoPGYC8tq6bGM3jzAKlGA2LABgoqd6M,13139
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- cellfinder/napari/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
43
- cellfinder/napari/curation.py,sha256=jz7GekuuzOdwiEFLarvvO5Bho68k8eL7AjObMdEoPXw,21447
44
- cellfinder/napari/input_container.py,sha256=tkm0dkPt7kSL8Xkvs1fh8M6vKWw57QLIt_wv74HFkGk,2150
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- cellfinder/napari/napari.yaml,sha256=WMR1CIAmYIVyQngbdbomTRZLvlDbb6LxsXsvTRClQnE,921
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- cellfinder/napari/sample_data.py,sha256=oUST23q09MM8dxHbUCmO0AjtXG6OlR_32LLqP0EU2UA,732
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