cellects 0.3.1__py3-none-any.whl → 0.3.5__py3-none-any.whl

cellects/gui/video_analysis_window.py

@@ -76,15 +76,15 @@ class VideoAnalysisWindow(MainTabsType):
         self.video_tab.set_in_use()
         self.data_tab.clicked.connect(self.data_tab_is_clicked)
         self.image_tab.clicked.connect(self.image_tab_is_clicked)
-        self.thread = {}
-        self.thread['VideoReader'] = VideoReaderThread(self.parent())
-        self.thread['OneArena'] = OneArenaThread(self.parent())
-        self.thread['ChangeOneRepResult'] = ChangeOneRepResultThread(self.parent())
-        self.thread['RunAll'] = RunAllThread(self.parent())
+        self.thread_dict = {}
+        self.thread_dict['VideoReader'] = VideoReaderThread(self.parent())
+        self.thread_dict['OneArena'] = OneArenaThread(self.parent())
+        self.thread_dict['ChangeOneRepResult'] = ChangeOneRepResultThread(self.parent())
+        self.thread_dict['RunAll'] = RunAllThread(self.parent())
         self.previous_arena = 0
         curr_row_main_layout = 0
         ncol = 1
-        self.Vlayout.addItem(self.vertical_space)#, curr_row_main_layout, 0, 1, ncol)
+        self.Vlayout.addItem(QtWidgets.QSpacerItem(1, 1, QtWidgets.QSizePolicy.Maximum, QtWidgets.QSizePolicy.MinimumExpanding))#, curr_row_main_layout, 0, 1, ncol)
         curr_row_main_layout += 1
 
         # Open subtitle
@@ -94,10 +94,11 @@ class VideoAnalysisWindow(MainTabsType):
         self.general_step_label = FixedText('Step 1: Tune parameters to improve Detection', night_mode=self.parent().po.all['night_mode'])
         self.general_step_button = PButton('Done', night_mode=self.parent().po.all['night_mode'])
         self.general_step_button.clicked.connect(self.step_done_is_clicked)
-        self.general_step_layout.addItem(self.horizontal_space)
+        self.general_step_layout.addItem(QtWidgets.QSpacerItem(1, 1, QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Maximum))
         self.general_step_layout.addWidget(self.general_step_label)
         self.general_step_layout.addWidget(self.general_step_button)
-        self.general_step_layout.addItem(self.horizontal_space)
+        self.general_step_layout.addItem(QtWidgets.QSpacerItem(1, 1, QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Maximum))
+
         self.general_step_widget.setLayout(self.general_step_layout)
         self.Vlayout.addWidget(self.general_step_widget)#, curr_row_main_layout, 0, 1, ncol)
         curr_row_main_layout += 1
@@ -105,7 +106,7 @@ class VideoAnalysisWindow(MainTabsType):
         # Open central widget
         self.video_display_widget = QtWidgets.QWidget()
         self.video_display_layout = QtWidgets.QHBoxLayout()
-        self.video_display_layout.addItem(self.horizontal_space)
+        self.video_display_layout.addItem(QtWidgets.QSpacerItem(1, 1, QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Maximum))
         #   Open left widget
         self.left_options_widget = QtWidgets.QWidget()
         self.left_options_layout = QtWidgets.QVBoxLayout()
@@ -240,10 +241,10 @@ class VideoAnalysisWindow(MainTabsType):
         self.right_options_layout.addWidget(self.read, alignment=QtCore.Qt.AlignCenter)
 
 
-        self.right_options_layout.addItem(self.horizontal_space)
+        self.right_options_layout.addItem(QtWidgets.QSpacerItem(1, 1, QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Maximum))
         self.right_options_widget.setLayout(self.right_options_layout)
         self.video_display_layout.addWidget(self.right_options_widget)
-        self.video_display_layout.addItem(self.horizontal_space)
+        self.video_display_layout.addItem(QtWidgets.QSpacerItem(1, 1, QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Maximum))
         # Close central widget
         self.video_display_widget.setLayout(self.video_display_layout)
         self.Vlayout.addWidget(self.video_display_widget)#, curr_row_main_layout, 0)
@@ -252,7 +253,7 @@ class VideoAnalysisWindow(MainTabsType):
         # Open Second step row
         self.second_step_widget = QtWidgets.QWidget()
         self.second_step_layout = QtWidgets.QHBoxLayout()
-        self.second_step_layout.addItem(self.horizontal_space)
+        self.second_step_layout.addItem(QtWidgets.QSpacerItem(1, 1, QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Maximum))
         self.second_step_widget.setVisible(False)
 
         self.fading_widget = QtWidgets.QWidget()
@@ -292,9 +293,9 @@ class VideoAnalysisWindow(MainTabsType):
 
         # Close Second step row
         self.second_step_layout.setAlignment(QtCore.Qt.AlignHCenter)
-        self.second_step_layout.addItem(self.horizontal_space)
+        self.second_step_layout.addItem(QtWidgets.QSpacerItem(1, 1, QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Maximum))
         self.second_step_widget.setLayout(self.second_step_layout)
-        self.Vlayout.addItem(self.vertical_space)#, curr_row_main_layout, 0, 1, ncol)
+        self.Vlayout.addItem(QtWidgets.QSpacerItem(1, 1, QtWidgets.QSizePolicy.Maximum, QtWidgets.QSizePolicy.MinimumExpanding))#, curr_row_main_layout, 0, 1, ncol)
         curr_row_main_layout += 1
         self.Vlayout.addWidget(self.second_step_widget)#, curr_row_main_layout, 0)
         curr_row_main_layout += 1
@@ -302,7 +303,7 @@ class VideoAnalysisWindow(MainTabsType):
         # Open last options row widget
         self.last_options_widget = QtWidgets.QWidget()
         self.last_options_layout = QtWidgets.QHBoxLayout()
-        self.last_options_layout.addItem(self.horizontal_space)
+        self.last_options_layout.addItem(QtWidgets.QSpacerItem(1, 1, QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Maximum))
 
         self.advanced_parameters = PButton(FW["Advanced_parameters"]["label"], tip=FW["Advanced_parameters"]["tips"],
                                            night_mode=self.parent().po.all['night_mode'])
@@ -322,7 +323,7 @@ class VideoAnalysisWindow(MainTabsType):
         self.last_options_layout.addWidget(self.save_all_vars)
 
         # Close last options widget
-        self.last_options_layout.addItem(self.horizontal_space)
+        self.last_options_layout.addItem(QtWidgets.QSpacerItem(1, 1, QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Maximum))
         self.last_options_widget.setLayout(self.last_options_layout)
         self.Vlayout.addWidget(self.last_options_widget)#, curr_row_main_layout, 0)
         curr_row_main_layout += 1
@@ -343,12 +344,12 @@ class VideoAnalysisWindow(MainTabsType):
         self.last_row_widget = QtWidgets.QWidget()
         self.last_row_layout = QtWidgets.QHBoxLayout()
         self.last_row_layout.addWidget(self.previous)
-        self.last_row_layout.addItem(self.horizontal_space)
+        self.last_row_layout.addItem(QtWidgets.QSpacerItem(1, 1, QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Maximum))
         self.last_row_layout.addWidget(self.message)
         self.last_row_layout.addWidget(self.run_all)
         # Close last row widget
         self.last_row_widget.setLayout(self.last_row_layout)
-        self.Vlayout.addItem(self.vertical_space)#, curr_row_main_layout, 0, 1, ncol)
+        self.Vlayout.addItem(QtWidgets.QSpacerItem(1, 1, QtWidgets.QSizePolicy.Maximum, QtWidgets.QSizePolicy.MinimumExpanding))#, curr_row_main_layout, 0, 1, ncol)
         self.Vlayout.addWidget(self.last_row_widget)#, curr_row_main_layout + 1, 0)
 
         self.setLayout(self.Vlayout)
@@ -458,7 +459,7 @@ class VideoAnalysisWindow(MainTabsType):
         This function displays an error message when a thread relative to the current window is running.
         This function also save the id of the following window for later use.
         """
-        if self.thread['VideoReader'].isRunning() or self.thread['OneArena'].isRunning() or self.thread['ChangeOneRepResult'].isRunning() or self.parent().firstwindow.thread["RunAll"].isRunning():
+        if self.thread_dict['VideoReader'].isRunning() or self.thread_dict['OneArena'].isRunning() or self.thread_dict['ChangeOneRepResult'].isRunning() or self.parent().firstwindow.thread_dict["RunAll"].isRunning():
             self.message.setText("Wait for the analysis to end, or restart Cellects")
         else:
             self.parent().last_tab = "data_specifications"
@@ -475,8 +476,8 @@ class VideoAnalysisWindow(MainTabsType):
         This function also save the id of the following window for later use.
         """
         if self.image_tab.state != "not_usable":
-            if self.thread['VideoReader'].isRunning() or self.thread['OneArena'].isRunning() or self.thread[
-                'ChangeOneRepResult'].isRunning() or self.parent().firstwindow.thread["RunAll"].isRunning():
+            if self.thread_dict['VideoReader'].isRunning() or self.thread_dict['OneArena'].isRunning() or self.thread_dict[
+                'ChangeOneRepResult'].isRunning() or self.parent().firstwindow.thread_dict["RunAll"].isRunning():
                 self.message.setText("Wait for the analysis to end, or restart Cellects")
             else:
                 self.parent().last_tab = "video_analysis"
@@ -526,8 +527,8 @@ class VideoAnalysisWindow(MainTabsType):
         This method is used to ensure that variable saving operations are performed
         in a separate thread to avoid blocking the main application.
         """
-        if not self.parent().thread['SaveAllVars'].isRunning():
-            self.parent().thread['SaveAllVars'].start()  # SaveAllVarsThreadInThirdWidget
+        if not self.parent().thread_dict['SaveAllVars'].isRunning():
+            self.parent().thread_dict['SaveAllVars'].start()  # SaveAllVarsThreadInThirdWidget
 
     def save_current_settings(self):
         """
@@ -581,7 +582,7 @@ class VideoAnalysisWindow(MainTabsType):
         arena processing threads. It should be called when all relevant threads are not
         running to ensure the arena's state is properly reset.
         """
-        if not self.thread['VideoReader'].isRunning() and not self.thread['OneArena'].isRunning() and not self.thread['ChangeOneRepResult'].isRunning():
+        if not self.thread_dict['VideoReader'].isRunning() and not self.thread_dict['OneArena'].isRunning() and not self.thread_dict['ChangeOneRepResult'].isRunning():
             self.parent().po.motion = None
             self.reset_general_step()
             self.parent().po.computed_video_options = np.zeros(5, bool)
@@ -647,17 +648,17 @@ class VideoAnalysisWindow(MainTabsType):
         Ensures that the previous arena settings are cleared and connects signals
         to display messages and images during thread execution.
         """
-        if self.thread['OneArena']._isRunning:
-            self.thread['OneArena'].stop()
+        if self.thread_dict['OneArena']._isRunning:
+            self.thread_dict['OneArena'].stop()
         self.save_current_settings()
         if self.previous_arena != self.parent().po.all['arena']:
             self.parent().po.motion = None
         self.message.setText("Load the video and initialize analysis, wait...")
-        self.thread['OneArena'].start()  # OneArenaThreadInThirdWidget
-        self.thread['OneArena'].message_from_thread_starting.connect(self.display_message_from_thread)
-        self.thread['OneArena'].when_loading_finished.connect(self.when_loading_thread_finished)
-        self.thread['OneArena'].when_detection_finished.connect(self.when_detection_finished)
-        self.thread['OneArena'].image_from_thread.connect(self.display_image_during_thread)
+        self.thread_dict['OneArena'].start()  # OneArenaThreadInThirdWidget
+        self.thread_dict['OneArena'].message_from_thread_starting.connect(self.display_message_from_thread)
+        self.thread_dict['OneArena'].when_loading_finished.connect(self.when_loading_thread_finished)
+        self.thread_dict['OneArena'].when_detection_finished.connect(self.when_detection_finished)
+        self.thread_dict['OneArena'].image_from_thread.connect(self.display_image_during_thread)
 
     def when_loading_thread_finished(self, save_loaded_video: bool):
         """
@@ -671,8 +672,8 @@ class VideoAnalysisWindow(MainTabsType):
         """
         self.previous_arena = self.parent().po.all['arena']
         if save_loaded_video:
-            self.thread['WriteVideo'] = WriteVideoThread(self.parent())
-            self.thread['WriteVideo'].start()
+            self.thread_dict['WriteVideo'] = WriteVideoThread(self.parent())
+            self.thread_dict['WriteVideo'].start()
         if self.parent().po.load_quick_full == 0:
             self.message.setText("Loading done, you can watch the video")
         self.read.setVisible(True)
@@ -699,8 +700,8 @@ class VideoAnalysisWindow(MainTabsType):
         `image_to_display`, and methods like `display_image.update_image`.
         """
         self.previous_arena = self.parent().po.all['arena']
-        if self.thread['VideoReader'].isRunning():  # VideoReaderThreadInThirdWidget
-            self.thread['VideoReader'].wait()
+        if self.thread_dict['VideoReader'].isRunning():  # VideoReaderThreadInThirdWidget
+            self.thread_dict['VideoReader'].wait()
         if self.parent().po.load_quick_full > 0:
             image = self.parent().po.motion.segmented[-1, ...]
         if self.parent().po.motion.visu is None:
@@ -742,10 +743,10 @@ class VideoAnalysisWindow(MainTabsType):
         """
         if self.parent().po.motion is not None:
             if self.parent().po.load_quick_full == 2:
-                if not self.thread['OneArena'].isRunning() and not self.thread['ChangeOneRepResult'].isRunning():
+                if not self.thread_dict['OneArena'].isRunning() and not self.thread_dict['ChangeOneRepResult'].isRunning():
                     self.message.setText(f"Arena {self.parent().po.all['arena']}: Finalize analysis and save, wait...")
-                    self.thread['ChangeOneRepResult'].start()  # ChangeOneRepResultThreadInThirdWidget
-                    self.thread['ChangeOneRepResult'].message_from_thread.connect(self.display_message_from_thread)
+                    self.thread_dict['ChangeOneRepResult'].start()  # ChangeOneRepResultThreadInThirdWidget
+                    self.thread_dict['ChangeOneRepResult'].message_from_thread.connect(self.display_message_from_thread)
                     self.message.setText("Complete analysis + change that result")
                 else:
                     self.message.setText("Wait for the analysis to end")
@@ -763,9 +764,9 @@ class VideoAnalysisWindow(MainTabsType):
         """
         if self.parent().po.motion is not None:
             if self.parent().po.motion.segmented is not None:
-                if not self.thread['OneArena'].isRunning() and not self.thread['VideoReader'].isRunning():
-                    self.thread['VideoReader'].start()  # VideoReaderThreadInThirdWidget
-                    self.thread['VideoReader'].message_from_thread.connect(self.display_image_during_thread)
+                if not self.thread_dict['OneArena'].isRunning() and not self.thread_dict['VideoReader'].isRunning():
+                    self.thread_dict['VideoReader'].start()  # VideoReaderThreadInThirdWidget
+                    self.thread_dict['VideoReader'].message_from_thread.connect(self.display_image_during_thread)
                 else:
                     self.message.setText("Wait for the analysis to end")
             else:
@@ -786,24 +787,24 @@ class VideoAnalysisWindow(MainTabsType):
         This function will only start the analysis if no other threads
         are running. It updates several attributes of the parent object.
         """
-        if self.thread['OneArena'].isRunning() or self.thread['ChangeOneRepResult'].isRunning():
+        if self.thread_dict['OneArena'].isRunning() or self.thread_dict['ChangeOneRepResult'].isRunning():
             self.message.setText("Wait for the current analysis to end")
         else:
-            if self.thread['VideoReader'].isRunning():
-                self.thread['VideoReader'].wait()
-            if self.parent().firstwindow.thread["RunAll"].isRunning():
+            if self.thread_dict['VideoReader'].isRunning():
+                self.thread_dict['VideoReader'].wait()
+            if self.parent().firstwindow.thread_dict["RunAll"].isRunning():
                 self.message.setText('Analysis has already begun in the first window.')
             else:
-                if not self.thread['RunAll'].isRunning():
+                if not self.thread_dict['RunAll'].isRunning():
                     self.save_current_settings()
                     self.parent().po.motion = None
                     self.parent().po.converted_video = None
                     self.parent().po.converted_video2 = None
                     self.parent().po.visu = None
                     self.message.setText("Complete analysis has started, wait...")
-                    self.thread['RunAll'].start()  # RunAllThread
-                    self.thread['RunAll'].message_from_thread.connect(self.display_message_from_thread)
-                    self.thread['RunAll'].image_from_thread.connect(self.display_image_during_thread)
+                    self.thread_dict['RunAll'].start()  # RunAllThread
+                    self.thread_dict['RunAll'].message_from_thread.connect(self.display_message_from_thread)
+                    self.thread_dict['RunAll'].image_from_thread.connect(self.display_image_during_thread)
 
     def display_message_from_thread(self, text_from_thread: str):
         """
@@ -816,19 +817,3 @@ class VideoAnalysisWindow(MainTabsType):
         """
         self.message.setText(text_from_thread)
 
-    def closeEvent(self, event):
-        """
-        Handle the close event for a QWidget.
-        """
-        event.accept
-
-
-# if __name__ == "__main__":
-#     from cellects.gui.cellects import CellectsMainWidget
-#     import sys
-#     app = QtWidgets.QApplication([])
-#     parent = CellectsMainWidget()
-#     session = VideoAnalysisWindow(parent, False)
-#     parent.insertWidget(0, session)
-#     parent.show()
-#     sys.exit(app.exec())

cellects/image_analysis/shape_descriptors.py

@@ -169,7 +169,7 @@ def compute_one_descriptor_per_colony(binary_vid: NDArray[np.uint8], arena_label
     centroids = []
 
     # pat_tracker = PercentAndTimeTracker(dims[0], compute_with_elements_number=True)
-    for t in tqdm(np.arange(2)):#dims[0])):
+    for t in tqdm(np.arange(dims[0])):
         # We rank colonies in increasing order to make sure that the larger colony issued from a colony division
         # keeps the previous colony name.
         # shapes, stats, centers = cc(binary_vid[t, :, :])

cellects/utils/load_display_save.py

@@ -635,7 +635,7 @@ def read_and_rotate(image_name, prev_img: NDArray=None, raw_images: bool=False,
 
     Examples
     ------
-    >>> pathway = Path(__name__).resolve().parents[0] / "data" / "experiment"
+    >>> pathway = Path(__name__).resolve().parents[0] / "data" / "single_experiment"
     >>> image_name = 'image1.tif'
     >>> image = read_and_rotate(pathway /image_name)
     >>> print(image.shape)
@@ -1084,7 +1084,7 @@ def extract_time(image_list: list, pathway="", raw_images:bool=False):
 
     Examples
     --------
-    >>> pathway = Path(__name__).resolve().parents[0] / "data" / "experiment"
+    >>> pathway = Path(__name__).resolve().parents[0] / "data" / "single_experiment"
     >>> image_list = ['image1.tif', 'image2.tif']
     >>> time = extract_time(image_list, pathway)
     >>> print(time)

{cellects-0.3.1.dist-info → cellects-0.3.5.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: cellects
-Version: 0.3.1
+Version: 0.3.5
 Summary: Cell Expansion Computer Tracking Software.
 Author: Aurèle Boussard
 License:                     GNU GENERAL PUBLIC LICENSE
@@ -730,7 +730,7 @@ Requires-Dist: mkdocs-jupyter; extra == "doc"
 [![Python versions](https://img.shields.io/pypi/pyversions/cellects.svg?style=flat-square)](https://pypi.org/project/cellects/)
 [![License](https://img.shields.io/pypi/l/cellects.svg?style=flat-square)](https://github.com/Aurele-B/cellects/blob/main/LICENSE)
 [![Stars](https://img.shields.io/github/stars/Aurele-B/cellects.svg?style=flat-square)](https://github.com/Aurele-B/cellects/stargazers)
-![GitHub Actions Workflow Status](https://img.shields.io/github/actions/workflow/status/Aurele-B/Cellects/.github%2Fworkflows%2Fci.yml)
+![GitHub Actions Workflow Status](https://img.shields.io/github/actions/workflow/status/Aurele-B/Cellects/.github%2Fworkflows%2Frelease.yml)
 ![Coverage](https://raw.githubusercontent.com/Aurele-B/cellects/gh-pages/badges/coverage.svg)
 
 Description
@@ -748,7 +748,7 @@ easy installation and user-friendly interface.
 
 ---
 
-## 🚀 Installation (Short version)
+## Installation (Short version)
 Install using our Windows installer: [Cellects_installer.exe](https://github.com/Aurele-B/Cellects/releases/)
 
 Or, install via pip:
@@ -759,15 +759,15 @@ Any difficulties? follow our [complete installation tutorial](https://aurele-b.g
 
 ---
 
-## 🎯 Quick Start
+## Quick Start
 Run in terminal:
 ```bash
-Cellects
+cellects
 ```
 
 ---
 
-## 📚 Documentation
+## Documentation
 
 Cellects' workflow is described in a [complete documentation](https://aurele-b.github.io/Cellects/). It includes:
 - [**What is Cellects**](https://aurele-b.github.io/Cellects/what-is-cellects/): Purpose of the software, usable data and introduction of its user manual
@@ -779,7 +779,7 @@ Cellects' workflow is described in a [complete documentation](https://aurele-b.g
 
 ---
 
-## 🧪 Use Cases
+## Use Cases
 
 See [use cases](https://aurele-b.github.io/Cellects/use-cases/) for real-world examples:
 - Automated Physarum polycephalum tracking using GUI
@@ -788,7 +788,7 @@ See [use cases](https://aurele-b.github.io/Cellects/use-cases/) for real-world e
 
 ---
 
-## 🛠 Contributing
+## Contributing
 
 We welcome contributions!  
 1. Fork the repository and create a new branch.
@@ -798,7 +798,7 @@ For developer workflows, see [**Contributing**](https://aurele-b.github.io/Celle
 
 ---
 
-## 📌 License & Citation
+## License & Citation
 
 GNU GPL3 License (see [LICENSE](https://github.com/Aurele-B/cellects/blob/main/LICENSE)).
 
@@ -816,7 +816,7 @@ To cite Cellects, use:
 
 ---
 
-## 🧪 Testing
+## Testing
 
 Run unit tests with:
 ```bash

{cellects-0.3.1.dist-info → cellects-0.3.5.dist-info}/RECORD

@@ -3,22 +3,22 @@ cellects/__main__.py,sha256=7JEHy1h2TRZCrGh1TmYp_b1QLWm8ZqekRkKb9wKE-dU,2798
 cellects/config/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cellects/config/all_vars_dict.py,sha256=Vdu0JoIqwY6QPa8z_DDiZd5QTEdIhPkSvGDjyzX5GTU,6249
 cellects/core/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-cellects/core/cellects_paths.py,sha256=vwFEYXVAD16w0euoTuJ8Ca0tUyelsoiDNmWqryU5k-k,880
+cellects/core/cellects_paths.py,sha256=fZ0p1h4zOeb8HCYkr6qAkCWtAJjgGD4R9FLAcPtjrX8,887
 cellects/core/cellects_threads.py,sha256=YRitz7JY5TVq9BSrqU3S8K-srW9gsFfkG16G3zVF--Y,96014
 cellects/core/motion_analysis.py,sha256=F2TpebmmvAgH0cY-P2J4CjqDxb_uB1BbAZlGcrGvVPI,99711
 cellects/core/one_image_analysis.py,sha256=Z5ztSmiRUeaJHGiTVPFOS_XbMtcjoER72g72Pa4_ziM,43557
 cellects/core/program_organizer.py,sha256=mJlznRrgMWxnPdAbrrkLtYQVhisvc4_WihpKSFIkDPA,92383
-cellects/core/script_based_run.py,sha256=EIGPK_pnyHLwExvCgM9C44LFOle9KKp_sRl0da4fA3o,7017
+cellects/core/script_based_run.py,sha256=phkQ7woGuiDvmXecttLQBHNCEmrbZ9_fYTQwk9ya-wo,7340
 cellects/gui/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-cellects/gui/advanced_parameters.py,sha256=8lpXsSrLr7JZ0PUsl2rslddwU4KSNqWjmqUd68_u1Ng,77321
-cellects/gui/cellects.py,sha256=KpCOL1j3sBVcqp5l2epNc28knekGGLUYiLZ3XmEw5BE,8325
-cellects/gui/custom_widgets.py,sha256=tSB8sIPCJ8B10eTNrfj1iKoztSQS0iYX2WjYjGpI88o,34257
-cellects/gui/first_window.py,sha256=_uYruDNS2FTBMD-T4wUsUJjN6O3uJ_dI_Mf706Zrroo,28585
-cellects/gui/if_several_folders_window.py,sha256=9KcnWxzURtxS6ViyoWZVJ7dFBlH4XcRCCsWuL1v4L-c,13803
-cellects/gui/image_analysis_window.py,sha256=DVd0b7IswiFyQIp3KxAWMreJoKQLBJ0r3QYEMFzSsvE,131348
-cellects/gui/required_output.py,sha256=ib3jXSzRuRzE_yU_ZNkrimCcq6NjAukz088T2Zgl95c,13654
+cellects/gui/advanced_parameters.py,sha256=wDQO628Trp-MjufVfSoznb3gcpd61RZihlqypRccuoc,77950
+cellects/gui/cellects.py,sha256=EvY5aXjtcydxIiPEQH_xlkGJsLVgCZvjfL7UQfBnowY,8676
+cellects/gui/custom_widgets.py,sha256=9UXbK_eFaLrkcqFukEMFFZaSkHSZJ-2lZF6BT8e9aFo,28514
+cellects/gui/first_window.py,sha256=vBL_ZjkHlYo1lrMGDtRFWf4yfV7XB5E7gBBkscbfVfU,29530
+cellects/gui/if_several_folders_window.py,sha256=bW1GYAHjx4uIW1Dr-jxcVYFxo4LUOei0jKMKxCXUBhY,14091
+cellects/gui/image_analysis_window.py,sha256=F7_o7esCx6hk8_MPDn4XKzime9MNDf5YBQzaIq64Irg,133321
+cellects/gui/required_output.py,sha256=HUI-Odk_Izrar4hNqPzObzrVw2s8JMiu-SC0TYTu3AA,13709
 cellects/gui/ui_strings.py,sha256=_IdMR7Xalk6-USEQ3zNcUmFE04Tmf8QneLzvKs3rEOM,31181
-cellects/gui/video_analysis_window.py,sha256=hxIqEWKisJSV3tnceFQfVXkjmC_AuARCcqMZ5ucmGIQ,43340
+cellects/gui/video_analysis_window.py,sha256=fcdi6V1a9D4aubZT4UWy-fKP78_80rduigPG9fvofio,44136
 cellects/icons/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cellects/icons/cellects_icon.icns,sha256=3GM5rpVKUoy-gAYEee5gGPh9lQx9KZqh9iRqYCT83Aw,393392
 cellects/icons/cellects_icon.ico,sha256=Eqlci8zZ0zdsRh2kSQAu4aHAPbR2NEzSbJPgaRQNenI,208076
@@ -30,15 +30,15 @@ cellects/image_analysis/network_functions.py,sha256=QHBU09U8My3IQqzDhxcK9t6ZDhxh
 cellects/image_analysis/one_image_analysis_threads.py,sha256=Spq_LyGiVE4IhsnU8h0DS03c_Y_xHSeCzK2vPvyeah8,17675
 cellects/image_analysis/oscillations_functions.py,sha256=87dZAEVf4jzyVfM5_iFVsuUOJPxZ5gXSHsZsH3A7n7A,6853
 cellects/image_analysis/progressively_add_distant_shapes.py,sha256=WTIW0JZBPiVmnwP_vG18bp6BPRCsr0JPdGd1SEdUPUU,25719
-cellects/image_analysis/shape_descriptors.py,sha256=L9r4-Y-n4_k4hL1FpDbE1Plgo9Lq25sGkoZ4Lt9CnMY,41964
+cellects/image_analysis/shape_descriptors.py,sha256=fFzt0-Q8cErfHw7gpHGrx01ytyGKywidyGlb6zGmcVE,41959
 cellects/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cellects/utils/decorators.py,sha256=kjZWSK71l5-LrrH7BZHb0kdFaAikC_qZu14_KjIUCms,361
 cellects/utils/formulas.py,sha256=C-koFJpqt42fUe4pfNO-5tzZqyEV90MyqmULt9CIYs8,25287
-cellects/utils/load_display_save.py,sha256=ZlqB7LFGrTphWCZBVDex0_ISZV4q3Xsmc9q_jyxVqSI,48969
+cellects/utils/load_display_save.py,sha256=I9NBlXSRghLzp1Dw8L607vtViCuFWtTYjZHurSI_e0Q,48983
 cellects/utils/utilitarian.py,sha256=mwGWUgrnaO_2Lne485cp0MxsCxtK68whK9O2fAJ725E,19735
-cellects-0.3.1.dist-info/LICENSE,sha256=RkNnEPPAi068Hv0ST1RwdKOi_Mc6Ukik5twIYPLWXjw,35176
-cellects-0.3.1.dist-info/METADATA,sha256=P82bC6T7DxaYyRTZi0x_sLuVEfCl5YaSak-DI8ydiAM,46231
-cellects-0.3.1.dist-info/WHEEL,sha256=beeZ86-EfXScwlR_HKu4SllMC9wUEj_8Z_4FJ3egI2w,91
-cellects-0.3.1.dist-info/entry_points.txt,sha256=JT6rEvKpUuKyDPvfOYma-IMQNvfnKMstFMAoVJhXIGc,60
-cellects-0.3.1.dist-info/top_level.txt,sha256=8VlvCH4ka3bqugIpQnOVjc3UV9Vavfx5SXNyUV9_lGw,9
-cellects-0.3.1.dist-info/RECORD,,
+cellects-0.3.5.dist-info/LICENSE,sha256=RkNnEPPAi068Hv0ST1RwdKOi_Mc6Ukik5twIYPLWXjw,35176
+cellects-0.3.5.dist-info/METADATA,sha256=yreFFI5U2v4HQHQhq5WJVIlW7Tszo6RxNACTYcjlr18,46201
+cellects-0.3.5.dist-info/WHEEL,sha256=beeZ86-EfXScwlR_HKu4SllMC9wUEj_8Z_4FJ3egI2w,91
+cellects-0.3.5.dist-info/entry_points.txt,sha256=JT6rEvKpUuKyDPvfOYma-IMQNvfnKMstFMAoVJhXIGc,60
+cellects-0.3.5.dist-info/top_level.txt,sha256=8VlvCH4ka3bqugIpQnOVjc3UV9Vavfx5SXNyUV9_lGw,9
+cellects-0.3.5.dist-info/RECORD,,