celldetective 1.4.0__py3-none-any.whl → 1.4.1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (78) hide show
  1. celldetective/_version.py +1 -1
  2. celldetective/exceptions.py +11 -0
  3. celldetective/filters.py +7 -1
  4. celldetective/gui/InitWindow.py +4 -1
  5. celldetective/gui/__init__.py +2 -9
  6. celldetective/gui/about.py +2 -2
  7. celldetective/gui/base_annotator.py +786 -0
  8. celldetective/gui/classifier_widget.py +18 -13
  9. celldetective/gui/configure_new_exp.py +51 -30
  10. celldetective/gui/control_panel.py +10 -7
  11. celldetective/gui/{signal_annotator.py → event_annotator.py} +473 -1437
  12. celldetective/gui/generic_signal_plot.py +2 -1
  13. celldetective/gui/gui_utils.py +5 -2
  14. celldetective/gui/help/neighborhood.json +2 -2
  15. celldetective/gui/layouts.py +21 -11
  16. celldetective/gui/{signal_annotator2.py → pair_event_annotator.py} +3 -1
  17. celldetective/gui/process_block.py +129 -91
  18. celldetective/gui/processes/downloader.py +37 -34
  19. celldetective/gui/processes/measure_cells.py +14 -8
  20. celldetective/gui/processes/segment_cells.py +21 -6
  21. celldetective/gui/processes/track_cells.py +12 -13
  22. celldetective/gui/settings/__init__.py +7 -0
  23. celldetective/gui/settings/_settings_base.py +70 -0
  24. celldetective/gui/{retrain_signal_model_options.py → settings/_settings_event_model_training.py} +35 -91
  25. celldetective/gui/{measurement_options.py → settings/_settings_measurements.py} +28 -81
  26. celldetective/gui/{neighborhood_options.py → settings/_settings_neighborhood.py} +1 -1
  27. celldetective/gui/settings/_settings_segmentation.py +49 -0
  28. celldetective/gui/{retrain_segmentation_model_options.py → settings/_settings_segmentation_model_training.py} +33 -79
  29. celldetective/gui/{signal_annotator_options.py → settings/_settings_signal_annotator.py} +73 -95
  30. celldetective/gui/{btrack_options.py → settings/_settings_tracking.py} +64 -87
  31. celldetective/gui/styles.py +2 -1
  32. celldetective/gui/survival_ui.py +1 -1
  33. celldetective/gui/tableUI.py +25 -0
  34. celldetective/gui/table_ops/__init__.py +0 -0
  35. celldetective/gui/table_ops/merge_groups.py +118 -0
  36. celldetective/gui/viewers.py +3 -5
  37. celldetective/gui/workers.py +0 -2
  38. celldetective/io.py +98 -55
  39. celldetective/links/zenodo.json +145 -144
  40. celldetective/measure.py +31 -26
  41. celldetective/preprocessing.py +34 -21
  42. celldetective/regionprops/_regionprops.py +16 -5
  43. celldetective/scripts/measure_cells.py +5 -5
  44. celldetective/scripts/measure_relative.py +16 -11
  45. celldetective/scripts/segment_cells.py +4 -4
  46. celldetective/scripts/segment_cells_thresholds.py +3 -3
  47. celldetective/scripts/track_cells.py +7 -7
  48. celldetective/scripts/train_segmentation_model.py +10 -1
  49. celldetective/tracking.py +10 -4
  50. celldetective/utils.py +59 -58
  51. {celldetective-1.4.0.dist-info → celldetective-1.4.1.dist-info}/METADATA +1 -1
  52. celldetective-1.4.1.dist-info/RECORD +123 -0
  53. tests/gui/__init__.py +0 -0
  54. tests/gui/test_new_project.py +228 -0
  55. tests/{test_qt.py → gui/test_project.py} +22 -26
  56. tests/test_preprocessing.py +2 -2
  57. celldetective/models/segmentation_effectors/ricm_bf_all_last/config_input.json +0 -79
  58. celldetective/models/segmentation_effectors/ricm_bf_all_last/ricm_bf_all_last +0 -0
  59. celldetective/models/segmentation_effectors/ricm_bf_all_last/training_instructions.json +0 -37
  60. celldetective/models/segmentation_effectors/test-transfer/config_input.json +0 -39
  61. celldetective/models/segmentation_effectors/test-transfer/test-transfer +0 -0
  62. celldetective/models/signal_detection/NucCond/classification_loss.png +0 -0
  63. celldetective/models/signal_detection/NucCond/classifier.h5 +0 -0
  64. celldetective/models/signal_detection/NucCond/config_input.json +0 -1
  65. celldetective/models/signal_detection/NucCond/log_classifier.csv +0 -126
  66. celldetective/models/signal_detection/NucCond/log_regressor.csv +0 -282
  67. celldetective/models/signal_detection/NucCond/regression_loss.png +0 -0
  68. celldetective/models/signal_detection/NucCond/regressor.h5 +0 -0
  69. celldetective/models/signal_detection/NucCond/scores.npy +0 -0
  70. celldetective/models/signal_detection/NucCond/test_confusion_matrix.png +0 -0
  71. celldetective/models/signal_detection/NucCond/test_regression.png +0 -0
  72. celldetective/models/signal_detection/NucCond/validation_confusion_matrix.png +0 -0
  73. celldetective/models/signal_detection/NucCond/validation_regression.png +0 -0
  74. celldetective-1.4.0.dist-info/RECORD +0 -131
  75. {celldetective-1.4.0.dist-info → celldetective-1.4.1.dist-info}/WHEEL +0 -0
  76. {celldetective-1.4.0.dist-info → celldetective-1.4.1.dist-info}/entry_points.txt +0 -0
  77. {celldetective-1.4.0.dist-info → celldetective-1.4.1.dist-info}/licenses/LICENSE +0 -0
  78. {celldetective-1.4.0.dist-info → celldetective-1.4.1.dist-info}/top_level.txt +0 -0
celldetective-1.4.0.dist-info/RECORD DELETED
@@ -1,131 +0,0 @@
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- celldetective/__init__.py,sha256=ZygAIkX6Nbjag1czWdQa-yP-GM1mBE_9ss21Xh__JFc,34
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- celldetective/gui/retrain_signal_model_options.py,sha256=3tmBPiOi2H-iqRj-QDRonHrA0Da4Vz-sS7irNkZo7aY,22994
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