celldetective 1.3.9.post5__py3-none-any.whl → 1.4.1__py3-none-any.whl

celldetective-1.3.9.post5.dist-info/RECORD

@@ -1,129 +0,0 @@
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-celldetective/gui/seg_model_loader.py,sha256=b1BiHuAf_ZqroE4jSEVCo7ASQv-xyWMPWU799alpbNM,19727
-celldetective/gui/signal_annotator.py,sha256=xr3w8nLD8JeAp_7Y851OqUKGUKeF2xrpbz3mNs5HJp4,89765
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-celldetective/gui/styles.py,sha256=SZy_ACkA6QB_4ANyY1V0m1QF66C0SVGssOrwW1Qt1Aw,5076
-celldetective/gui/survival_ui.py,sha256=Q-530cAK-SsKPr8sWFTbhGekB2CFLWd0SNjtV1Wr0oo,14202
-celldetective/gui/tableUI.py,sha256=Yz_pHk1ERXRb0QsBPrvLEwAGpvVlawgn1b6uzz5wL_0,58022
-celldetective/gui/thresholds_gui.py,sha256=nxKYcEAGVdnQK0RM8pOu9MtYuBIYEvXiQCygzRjhv08,48810
-celldetective/gui/viewers.py,sha256=HDLB6j1FJwgKR6dQwzeHmcDvDMbDIYwD2svd-VZhJFE,47806
-celldetective/gui/workers.py,sha256=P4qUMXuCtGcggGmJr3VitAPSfRG30wkJ1B0pfcdGbKg,4225
-celldetective/gui/help/DL-segmentation-strategy.json,sha256=PZD9xXjrwbX3TiudHJPuvcyZD28o4k-fVgeTd7dBKzI,1583
-celldetective/gui/help/Threshold-vs-DL.json,sha256=rrFnZT2DhyS7g1nIDWeUV8-HH7M2Sv8D7sDCGBU1M_0,934
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-celldetective/gui/help/exp-structure.json,sha256=61zZAHms7se4Vtuma904xKMsNlWuTOIeF24cbwQiYQg,1973
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-celldetective/gui/help/prefilter-for-segmentation.json,sha256=NEL6O2nj_l8ImjMzzX6qqg7U9QV01sgZMFvkGHUiG4E,791
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-celldetective/gui/help/track-postprocessing.json,sha256=VaGd8EEkA33OL-EI3NXWZ8yHeWWyUeImDF5yAjsVYGA,3990
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-celldetective/gui/processes/downloader.py,sha256=SuMTuM82QOZBqLfj36I14fhZ2k3NmLp0PBcGUHxnpXI,3287
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-celldetective/icons/logo-large.png,sha256=FXSwV3u6zEKcfpuSn4unnqB0oUnN9cHqQ9BCKWytrpg,36631
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-celldetective/icons/survival2.png,sha256=8zsualD7d9VPAecoFA4Om9TFARErqpJzMg6U7XANXf4,4479
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-celldetective/links/zenodo.json,sha256=Y1C0KFQ5K9rx8jXMLVbisU5Obg3389KK4MIpid3uWX8,34441
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-celldetective/models/segmentation_effectors/ricm_bf_all_last/ricm_bf_all_last,sha256=HTgeUImhkhjf-HsoziJPL16azPIGt2XiMmgvB_qf7DA,26559970
-celldetective/models/segmentation_effectors/ricm_bf_all_last/training_instructions.json,sha256=4ZcZVti1kA_1zV8_3jj2pZYBST0kX8Z00tlc4AATlxo,847
-celldetective/models/segmentation_effectors/test-transfer/config_input.json,sha256=JytjANaerSQBjMn-cZktHj8ESdMCIvXWdmwmgQGgUYE,1212
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-celldetective/models/segmentation_generic/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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-celldetective/models/signal_detection/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-celldetective/models/signal_detection/NucCond/classification_loss.png,sha256=iiZUE9cNm8MaeIHEKKxTeNSZAZi5_UgRD5GzmAPYfWk,15127
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-celldetective/models/signal_detection/NucCond/log_classifier.csv,sha256=d1gX2DkQPc8qFJIFFZvFPkpQuAEPQHD_3IbcgU0cruI,24955
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-celldetective/models/signal_detection/NucCond/regressor.h5,sha256=cwbrYA83hiPFPa4kX5dLbD3CR0iZR_5tqF12wgy_nwM,8524608
-celldetective/models/signal_detection/NucCond/scores.npy,sha256=i5pB9u-WlALazRlvC4JKraSBPpcHYmgPy-3RmxDFXIs,17018045
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-celldetective/models/tracking_configs/biased_motion.json,sha256=RZa-ZCP4jbFtMVz-M4lf1LtqmAvBrUxIhhudNiU1jtY,1782
-celldetective/models/tracking_configs/mcf7.json,sha256=iDjb8i6yxs0GleW39dvY3Ld5bZJatlXJrwI8PG3vCT0,1780
-celldetective/models/tracking_configs/no_z_motion.json,sha256=b4RWOJ0w6Y2e0vJYwKMyOexedeL2eA8fEDbSzbNmB4A,2702
-celldetective/models/tracking_configs/ricm.json,sha256=L-vmwCR1f89U-qnH2Ms0cBfPFR_dxIWoe2ccH8V-QBA,2727
-celldetective/models/tracking_configs/ricm2.json,sha256=DDjJ6ScYcDWvlsy7ujPID8v8H28vcNcMuZmNR8XmGxo,2718
-celldetective/regionprops/__init__.py,sha256=ohe9vC7j4lnpKnGXidVo1PVfoQfC8TqCuHTNo8rXmdg,44
-celldetective/regionprops/_regionprops.py,sha256=a68bAytxgy-WFUzrjWg-xViSE27ehN9PdKfyO-dxKxM,10275
-celldetective/regionprops/props.json,sha256=sCwACmbh0n-JAw9eve9yV85REukoMBJLsRjxCwTRMm8,2424
-celldetective/scripts/analyze_signals.py,sha256=YE05wZujl2hQFWkvqATBcCx-cAd_V3RxnvKoh0SB7To,2194
-celldetective/scripts/measure_cells.py,sha256=edZ9xlUsLg1TI_yudp7bd04B_oqdHk9Ee4mSDe8G86w,11769
-celldetective/scripts/measure_relative.py,sha256=wI7ibgWCsh5NVfcYum9LK0khL7cwKyCxwHFaXG4oWjM,3698
-celldetective/scripts/segment_cells.py,sha256=AZfHqig0WBMkAh9ho7JHmjM9vMO-EiPVviTHJcDj5Mw,6954
-celldetective/scripts/segment_cells_thresholds.py,sha256=J_QW53ndopSeq-uelBa2oTUCC2wG_FFCahEnn7PYpUE,5121
-celldetective/scripts/track_cells.py,sha256=3I83-rkaShSzBSvYH0OVzjcgHeIohCxumA5W-lHg5Rw,8798
-celldetective/scripts/train_segmentation_model.py,sha256=XExaGg8kkdirgN206J0mwiWtqeRE076-Ld2b89tReAI,9229
-celldetective/scripts/train_signal_model.py,sha256=D643wKVYg-LWHF2VU9FWKSuazXrpCpQK0YjGqoIimD0,3167
-tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-tests/test_events.py,sha256=eLFwwEEJfQAdwhews3-fn1HSvzozcNNFN_Qn0gOvQkE,685
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-celldetective-1.3.9.post5.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
-celldetective-1.3.9.post5.dist-info/METADATA,sha256=jn77YGkfor9ud4o0cvkEtDDwsKj4LnrMy6EDQj6aVWs,10753
-celldetective-1.3.9.post5.dist-info/WHEEL,sha256=52BFRY2Up02UkjOa29eZOS2VxUrpPORXg1pkohGGUS8,91
-celldetective-1.3.9.post5.dist-info/entry_points.txt,sha256=2NU6_EOByvPxqBbCvjwxlVlvnQreqZ3BKRCVIKEv3dg,62
-celldetective-1.3.9.post5.dist-info/top_level.txt,sha256=6rsIKKfGMKgud7HPuATcpq6EhdXwcg_yknBVWn9x4C4,20
-celldetective-1.3.9.post5.dist-info/RECORD,,

tests/test_qt.py

@@ -1,103 +0,0 @@
-import pytest
-from PyQt5 import QtCore
-from celldetective.gui.InitWindow import AppInitWindow
-from celldetective.utils import get_software_location
-import time
-import os
-
-abs_path = os.sep.join([os.path.split(os.path.dirname(os.path.realpath(__file__)))[0]])
-print(abs_path)
-
-@pytest.fixture
-def app(qtbot):
-	software_location = get_software_location()
-	test_app = AppInitWindow(software_location=software_location)
-	qtbot.addWidget(test_app)
-	return test_app
-
-# def test_launch_demo(app, qtbot):
-# 	app.experiment_path_selection.setText(abs_path + os.sep + 'examples/demo')
-# 	qtbot.mouseClick(app.validate_button, QtCore.Qt.LeftButton)
-
-# def test_preprocessing_panel(app, qtbot):
-
-# 	app.experiment_path_selection.setText(abs_path + os.sep + 'examples/demo')
-# 	qtbot.mouseClick(app.validate_button, QtCore.Qt.LeftButton)
-
-# 	qtbot.mouseClick(app.control_panel.PreprocessingPanel.collapse_btn, QtCore.Qt.LeftButton)
-# 	qtbot.mouseClick(app.control_panel.PreprocessingPanel.fit_correction_layout.add_correction_btn, QtCore.Qt.LeftButton)
-# 	qtbot.mouseClick(app.control_panel.PreprocessingPanel.collapse_btn, QtCore.Qt.LeftButton)
-
-def test_app(app, qtbot):
-
-	# Set an experiment folder and open
-	app.experiment_path_selection.setText(os.sep.join([abs_path,'examples','demo']))
-	qtbot.mouseClick(app.validate_button, QtCore.Qt.LeftButton)
-
-	# Set a position
-	#app.control_panel.position_list.setCurrentIndex(0)
-	#app.control_panel.update_position_options()
-
-	# View stacl
-	qtbot.mouseClick(app.control_panel.view_stack_btn, QtCore.Qt.LeftButton)
-	#qtbot.wait(1000)
-	app.control_panel.viewer.close()
-
-	# Expand process block
-	qtbot.mouseClick(app.control_panel.ProcessEffectors.collapse_btn, QtCore.Qt.LeftButton)
-
-	# Use Threshold Config Wizard
-	qtbot.mouseClick(app.control_panel.ProcessEffectors.upload_model_btn, QtCore.Qt.LeftButton)
-	qtbot.wait(1000)
-	qtbot.mouseClick(app.control_panel.ProcessEffectors.SegModelLoader.threshold_config_button, QtCore.Qt.LeftButton)
-	app.control_panel.ProcessEffectors.SegModelLoader.ThreshWizard.close()
-	app.control_panel.ProcessEffectors.SegModelLoader.close()
-
-	# Check segmentation with napari
-	#qtbot.mouseClick(app.control_panel.ProcessEffectors.check_seg_btn, QtCore.Qt.LeftButton)
-	# close napari?
-
-	# Train model
-	qtbot.mouseClick(app.control_panel.ProcessEffectors.train_btn, QtCore.Qt.LeftButton)
-	qtbot.wait(1000)
-	app.control_panel.ProcessEffectors.ConfigSegmentationTrain.close()
-
-	# Config tracking
-	qtbot.mouseClick(app.control_panel.ProcessEffectors.track_config_btn, QtCore.Qt.LeftButton)
-	qtbot.wait(1000)
-	app.control_panel.ProcessEffectors.ConfigTracking.close()
-
-	# Config measurements
-	qtbot.mouseClick(app.control_panel.ProcessEffectors.measurements_config_btn, QtCore.Qt.LeftButton)
-	qtbot.wait(1000)
-	app.control_panel.ProcessEffectors.ConfigMeasurements.close()
-
-	# Classifier widget
-	qtbot.mouseClick(app.control_panel.ProcessEffectors.classify_btn, QtCore.Qt.LeftButton)
-	qtbot.wait(1000)
-	app.control_panel.ProcessEffectors.ClassifierWidget.close()
-
-	# Config signal annotator
-	qtbot.mouseClick(app.control_panel.ProcessEffectors.config_signal_annotator_btn, QtCore.Qt.LeftButton)
-	qtbot.mouseClick(app.control_panel.ProcessEffectors.ConfigSignalAnnotator.rgb_btn, QtCore.Qt.LeftButton)
-	qtbot.wait(1000)
-	app.control_panel.ProcessEffectors.ConfigSignalAnnotator.close()
-
-	# Signal annotator widget
-	qtbot.mouseClick(app.control_panel.ProcessEffectors.check_signals_btn, QtCore.Qt.LeftButton)
-	qtbot.wait(1000)
-	app.control_panel.ProcessEffectors.SignalAnnotator.close()
-
-	# Table widget
-	qtbot.mouseClick(app.control_panel.ProcessEffectors.view_tab_btn, QtCore.Qt.LeftButton)
-	qtbot.wait(1000)
-	app.control_panel.ProcessEffectors.tab_ui.close()
-
-	#qtbot.mouseClick(app.control_panel.PreprocessingPanel.fit_correction_layout.add_correction_btn, QtCore.Qt.LeftButton)
-	qtbot.mouseClick(app.control_panel.ProcessEffectors.collapse_btn, QtCore.Qt.LeftButton)
-
-
-
-# def test_click(app, qtbot):
-# 	qtbot.mouseClick(app.new_exp_button, QtCore.Qt.LeftButton)
-#	qtbot.wait(10000)