celldetective 1.3.9.post5__py3-none-any.whl → 1.4.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- celldetective/__init__.py +0 -3
- celldetective/_version.py +1 -1
- celldetective/events.py +2 -4
- celldetective/extra_properties.py +132 -0
- celldetective/gui/InitWindow.py +33 -45
- celldetective/gui/__init__.py +1 -0
- celldetective/gui/about.py +19 -15
- celldetective/gui/analyze_block.py +34 -19
- celldetective/gui/base_components.py +23 -0
- celldetective/gui/btrack_options.py +26 -34
- celldetective/gui/classifier_widget.py +68 -81
- celldetective/gui/configure_new_exp.py +113 -17
- celldetective/gui/control_panel.py +68 -141
- celldetective/gui/generic_signal_plot.py +9 -12
- celldetective/gui/gui_utils.py +49 -21
- celldetective/gui/json_readers.py +5 -4
- celldetective/gui/layouts.py +246 -22
- celldetective/gui/measurement_options.py +32 -17
- celldetective/gui/neighborhood_options.py +10 -13
- celldetective/gui/plot_measurements.py +21 -17
- celldetective/gui/plot_signals_ui.py +125 -72
- celldetective/gui/process_block.py +180 -123
- celldetective/gui/processes/compute_neighborhood.py +594 -0
- celldetective/gui/processes/measure_cells.py +5 -0
- celldetective/gui/processes/segment_cells.py +27 -6
- celldetective/gui/processes/track_cells.py +6 -0
- celldetective/gui/retrain_segmentation_model_options.py +12 -20
- celldetective/gui/retrain_signal_model_options.py +57 -56
- celldetective/gui/seg_model_loader.py +21 -62
- celldetective/gui/signal_annotator.py +129 -70
- celldetective/gui/signal_annotator2.py +431 -635
- celldetective/gui/signal_annotator_options.py +8 -11
- celldetective/gui/survival_ui.py +49 -95
- celldetective/gui/tableUI.py +28 -25
- celldetective/gui/thresholds_gui.py +617 -1221
- celldetective/gui/viewers.py +106 -39
- celldetective/gui/workers.py +9 -3
- celldetective/io.py +57 -20
- celldetective/measure.py +63 -27
- celldetective/neighborhood.py +342 -268
- celldetective/preprocessing.py +25 -17
- celldetective/relative_measurements.py +50 -29
- celldetective/scripts/analyze_signals.py +4 -1
- celldetective/scripts/measure_relative.py +4 -1
- celldetective/scripts/segment_cells.py +0 -6
- celldetective/scripts/track_cells.py +3 -1
- celldetective/scripts/train_segmentation_model.py +7 -4
- celldetective/signals.py +29 -14
- celldetective/tracking.py +7 -2
- celldetective/utils.py +36 -8
- {celldetective-1.3.9.post5.dist-info → celldetective-1.4.0.dist-info}/METADATA +24 -16
- {celldetective-1.3.9.post5.dist-info → celldetective-1.4.0.dist-info}/RECORD +57 -55
- {celldetective-1.3.9.post5.dist-info → celldetective-1.4.0.dist-info}/WHEEL +1 -1
- tests/test_qt.py +21 -21
- {celldetective-1.3.9.post5.dist-info → celldetective-1.4.0.dist-info}/entry_points.txt +0 -0
- {celldetective-1.3.9.post5.dist-info → celldetective-1.4.0.dist-info/licenses}/LICENSE +0 -0
- {celldetective-1.3.9.post5.dist-info → celldetective-1.4.0.dist-info}/top_level.txt +0 -0
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celldetective/__main__.py,sha256=bxTlSvbKhqn3LW_azd2baDCnDsgb37PAP9DfuAJ1_5M,1844
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celldetective/events.py,sha256=n15R53c7QZ2wT8gjb0oeNikQbuRBrVVbyNsRCqXjzXA,8166
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celldetective/extra_properties.py,sha256=QxXl-zug3NyxZMNTJUsDxo8PHLIRt0AwOFUkTyYBv7E,19987
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celldetective/filters.py,sha256=6pl2IGPK2FH8KPWbjzQEbT4C-ruqE1fQ8NQNN7Euvy8,4433
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celldetective/measure.py,sha256=dzxYQuUmpT_dFRF4uyM_0IXsr_JwtqIlSkCMRQJN90g,59321
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celldetective/neighborhood.py,sha256=av7fzW3CjK7A5xO9AA1h36S50HzfM-aF9aaXb-uCrV4,60493
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celldetective/preprocessing.py,sha256=1GuOAlL8VtbdRz4zMWaqq5YSOukp7UG0rUMDINctgQM,44438
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celldetective/relative_measurements.py,sha256=vQhgkHokUtt2xBpZbR-MHWUukfJ02WbiBsBJqV9A_90,30964
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celldetective/segmentation.py,sha256=WApzoU1s3Ntvp0eIw_pRZXNwCA8LDKC9YoyR52tioz4,30943
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celldetective/tracking.py,sha256=N2Suv8KonlbQIVBgTjfXMVpbBLy_h4DkI_MQ3h6JsHw,40318
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celldetective/utils.py,sha256=69EdfRmAl0v7o9-QbuEUH8jvOILFge3GUZcFyUuGFoE,104886
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celldetective/gui/about.py,sha256=HRvoYk97cRucO7BVNp8ukScyZNODodLrKe0ATBsHG2Y,1847
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celldetective/gui/analyze_block.py,sha256=ukLlqqooP6UkJG00tZGnNWe3vqjVKj4zhtXcUnjOJj8,3048
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celldetective/gui/base_components.py,sha256=gYC0Gc3axDC241RpjNCXe7UKYG2uCDnMLx7at0kHKjA,768
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celldetective/gui/btrack_options.py,sha256=Oqa-4pE3XEf2oBR101ZfEvGTf5OFwz4nMN6jYEZ9434,44412
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celldetective/gui/classifier_widget.py,sha256=S3pL7YWaOC9XYMbwjn_8ZI48Mw-rCgXExByH6p3MzxE,20360
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celldetective/gui/configure_new_exp.py,sha256=-hB7UxLAMdEmaOgDg3CloUMgsxJIOjXyMCrfrZVkziQ,24115
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celldetective/gui/control_panel.py,sha256=lhkM5_cnuS9AdYZ3NCFxL6QvhIshjWZwX9bLn2KqDts,18006
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celldetective/gui/generic_signal_plot.py,sha256=jV1hEvmw6GA0xFBulTLX_mi-4KFgkHgL9E8WfLPZYno,36283
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celldetective/gui/json_readers.py,sha256=gDE9ly8x8oMR1id5U--JsOylGPMSmu9xw9wCfxH1stA,3719
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celldetective/gui/retrain_segmentation_model_options.py,sha256=5O8JmD0EV-7e2WtwrS9SBAd8J8ltmql-n6QYL3pZIbg,23521
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celldetective/gui/seg_model_loader.py,sha256=xTzJ02DJxBoyqeanmEybheVbn8uoxP1eay2odZbGH04,18108
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celldetective/gui/tableUI.py,sha256=r605jDdNBCKt_-zvWY9SsV2XHQeJRlR3gU63WzhuUko,58400
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celldetective/gui/thresholds_gui.py,sha256=d_vncQO837yPw9OMTJmrT0zl02G3___ynUHh1uU8k7A,29235
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celldetective/gui/viewers.py,sha256=H8tS26IFeCAYm-zqauRMzL61dh50bco60Ur4gWPIdOU,50091
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celldetective/gui/help/DL-segmentation-strategy.json,sha256=PZD9xXjrwbX3TiudHJPuvcyZD28o4k-fVgeTd7dBKzI,1583
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celldetective/gui/processes/compute_neighborhood.py,sha256=J0T1DaG58p1nB0_WseVbl3AL5jb76W0hzFaSNci5EDU,29181
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celldetective/gui/processes/segment_cells.py,sha256=7RHADro2Ipu8f2omS5ITPSUixglLa8bxvS1kpX3xECY,12059
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117
120
|
tests/test_neighborhood.py,sha256=gk5FmoI7ANEczUtNXYRxc48KzkfYzemwS_eYaLq4_NI,2093
|
|
118
121
|
tests/test_preprocessing.py,sha256=FI-Wk-kc4wWmOQg_NLCUIZC1oti396wr5cC-BauBai0,1436
|
|
119
|
-
tests/test_qt.py,sha256=
|
|
122
|
+
tests/test_qt.py,sha256=bQoaQ-R5rM2hTPqoXs55LbFr3DB8wROaKsFkDrGrJuE,4147
|
|
120
123
|
tests/test_segmentation.py,sha256=k1b_zIZdlytEdJcHjAUQEO3gTBAHtv5WvrwQN2xD4kc,3470
|
|
121
124
|
tests/test_signals.py,sha256=No4cah6KxplhDcKXnU8RrA7eDla4hWw6ccf7xGnBokU,3599
|
|
122
125
|
tests/test_tracking.py,sha256=8hebWSqEIuttD1ABn-6dKCT7EXKRR7-4RwyFWi1WPFo,8800
|
|
123
126
|
tests/test_utils.py,sha256=NKRCAC1d89aBK5cWjTb7-pInYow901RrT-uBlIdz4KI,3692
|
|
124
|
-
celldetective-1.
|
|
125
|
-
celldetective-1.
|
|
126
|
-
celldetective-1.
|
|
127
|
-
celldetective-1.
|
|
128
|
-
celldetective-1.
|
|
129
|
-
celldetective-1.3.9.post5.dist-info/RECORD,,
|
|
127
|
+
celldetective-1.4.0.dist-info/METADATA,sha256=nAbrMElw9SAt7IILF72ajWKLl2e5nc7aocZBiHvIAMY,10945
|
|
128
|
+
celldetective-1.4.0.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
|
|
129
|
+
celldetective-1.4.0.dist-info/entry_points.txt,sha256=2NU6_EOByvPxqBbCvjwxlVlvnQreqZ3BKRCVIKEv3dg,62
|
|
130
|
+
celldetective-1.4.0.dist-info/top_level.txt,sha256=6rsIKKfGMKgud7HPuATcpq6EhdXwcg_yknBVWn9x4C4,20
|
|
131
|
+
celldetective-1.4.0.dist-info/RECORD,,
|
tests/test_qt.py
CHANGED
|
@@ -44,57 +44,57 @@ def test_app(app, qtbot):
|
|
|
44
44
|
app.control_panel.viewer.close()
|
|
45
45
|
|
|
46
46
|
# Expand process block
|
|
47
|
-
qtbot.mouseClick(app.control_panel.
|
|
47
|
+
qtbot.mouseClick(app.control_panel.ProcessPopulations[0].collapse_btn, QtCore.Qt.LeftButton)
|
|
48
48
|
|
|
49
49
|
# Use Threshold Config Wizard
|
|
50
|
-
qtbot.mouseClick(app.control_panel.
|
|
50
|
+
qtbot.mouseClick(app.control_panel.ProcessPopulations[0].upload_model_btn, QtCore.Qt.LeftButton)
|
|
51
51
|
qtbot.wait(1000)
|
|
52
|
-
qtbot.mouseClick(app.control_panel.
|
|
53
|
-
app.control_panel.
|
|
54
|
-
app.control_panel.
|
|
52
|
+
qtbot.mouseClick(app.control_panel.ProcessPopulations[0].SegModelLoader.threshold_config_button, QtCore.Qt.LeftButton)
|
|
53
|
+
app.control_panel.ProcessPopulations[0].SegModelLoader.ThreshWizard.close()
|
|
54
|
+
app.control_panel.ProcessPopulations[0].SegModelLoader.close()
|
|
55
55
|
|
|
56
56
|
# Check segmentation with napari
|
|
57
57
|
#qtbot.mouseClick(app.control_panel.ProcessEffectors.check_seg_btn, QtCore.Qt.LeftButton)
|
|
58
58
|
# close napari?
|
|
59
59
|
|
|
60
60
|
# Train model
|
|
61
|
-
qtbot.mouseClick(app.control_panel.
|
|
61
|
+
qtbot.mouseClick(app.control_panel.ProcessPopulations[0].train_btn, QtCore.Qt.LeftButton)
|
|
62
62
|
qtbot.wait(1000)
|
|
63
|
-
app.control_panel.
|
|
63
|
+
app.control_panel.ProcessPopulations[0].ConfigSegmentationTrain.close()
|
|
64
64
|
|
|
65
65
|
# Config tracking
|
|
66
|
-
qtbot.mouseClick(app.control_panel.
|
|
66
|
+
qtbot.mouseClick(app.control_panel.ProcessPopulations[0].track_config_btn, QtCore.Qt.LeftButton)
|
|
67
67
|
qtbot.wait(1000)
|
|
68
|
-
app.control_panel.
|
|
68
|
+
app.control_panel.ProcessPopulations[0].ConfigTracking.close()
|
|
69
69
|
|
|
70
70
|
# Config measurements
|
|
71
|
-
qtbot.mouseClick(app.control_panel.
|
|
71
|
+
qtbot.mouseClick(app.control_panel.ProcessPopulations[0].measurements_config_btn, QtCore.Qt.LeftButton)
|
|
72
72
|
qtbot.wait(1000)
|
|
73
|
-
app.control_panel.
|
|
73
|
+
app.control_panel.ProcessPopulations[0].ConfigMeasurements.close()
|
|
74
74
|
|
|
75
75
|
# Classifier widget
|
|
76
|
-
qtbot.mouseClick(app.control_panel.
|
|
76
|
+
qtbot.mouseClick(app.control_panel.ProcessPopulations[0].classify_btn, QtCore.Qt.LeftButton)
|
|
77
77
|
qtbot.wait(1000)
|
|
78
|
-
app.control_panel.
|
|
78
|
+
app.control_panel.ProcessPopulations[0].ClassifierWidget.close()
|
|
79
79
|
|
|
80
80
|
# Config signal annotator
|
|
81
|
-
qtbot.mouseClick(app.control_panel.
|
|
82
|
-
qtbot.mouseClick(app.control_panel.
|
|
81
|
+
qtbot.mouseClick(app.control_panel.ProcessPopulations[0].config_signal_annotator_btn, QtCore.Qt.LeftButton)
|
|
82
|
+
qtbot.mouseClick(app.control_panel.ProcessPopulations[0].ConfigSignalAnnotator.rgb_btn, QtCore.Qt.LeftButton)
|
|
83
83
|
qtbot.wait(1000)
|
|
84
|
-
app.control_panel.
|
|
84
|
+
app.control_panel.ProcessPopulations[0].ConfigSignalAnnotator.close()
|
|
85
85
|
|
|
86
86
|
# Signal annotator widget
|
|
87
|
-
qtbot.mouseClick(app.control_panel.
|
|
87
|
+
qtbot.mouseClick(app.control_panel.ProcessPopulations[0].check_signals_btn, QtCore.Qt.LeftButton)
|
|
88
88
|
qtbot.wait(1000)
|
|
89
|
-
app.control_panel.
|
|
89
|
+
app.control_panel.ProcessPopulations[0].SignalAnnotator.close()
|
|
90
90
|
|
|
91
91
|
# Table widget
|
|
92
|
-
qtbot.mouseClick(app.control_panel.
|
|
92
|
+
qtbot.mouseClick(app.control_panel.ProcessPopulations[0].view_tab_btn, QtCore.Qt.LeftButton)
|
|
93
93
|
qtbot.wait(1000)
|
|
94
|
-
app.control_panel.
|
|
94
|
+
app.control_panel.ProcessPopulations[0].tab_ui.close()
|
|
95
95
|
|
|
96
96
|
#qtbot.mouseClick(app.control_panel.PreprocessingPanel.fit_correction_layout.add_correction_btn, QtCore.Qt.LeftButton)
|
|
97
|
-
qtbot.mouseClick(app.control_panel.
|
|
97
|
+
qtbot.mouseClick(app.control_panel.ProcessPopulations[0].collapse_btn, QtCore.Qt.LeftButton)
|
|
98
98
|
|
|
99
99
|
|
|
100
100
|
|
|
File without changes
|
|
File without changes
|
|
File without changes
|