celldetective 1.3.6.post1__py3-none-any.whl → 1.3.7__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (41) hide show
  1. celldetective/_version.py +1 -1
  2. celldetective/events.py +4 -0
  3. celldetective/filters.py +11 -2
  4. celldetective/gui/InitWindow.py +23 -9
  5. celldetective/gui/control_panel.py +19 -11
  6. celldetective/gui/generic_signal_plot.py +5 -0
  7. celldetective/gui/gui_utils.py +2 -2
  8. celldetective/gui/help/DL-segmentation-strategy.json +17 -17
  9. celldetective/gui/help/Threshold-vs-DL.json +11 -11
  10. celldetective/gui/help/cell-populations.json +5 -5
  11. celldetective/gui/help/exp-structure.json +15 -15
  12. celldetective/gui/help/feature-btrack.json +5 -5
  13. celldetective/gui/help/neighborhood.json +7 -7
  14. celldetective/gui/help/prefilter-for-segmentation.json +7 -7
  15. celldetective/gui/help/preprocessing.json +19 -19
  16. celldetective/gui/help/propagate-classification.json +7 -7
  17. celldetective/gui/neighborhood_options.py +1 -1
  18. celldetective/gui/plot_signals_ui.py +13 -9
  19. celldetective/gui/process_block.py +63 -14
  20. celldetective/gui/retrain_segmentation_model_options.py +21 -8
  21. celldetective/gui/retrain_signal_model_options.py +12 -2
  22. celldetective/gui/signal_annotator.py +9 -0
  23. celldetective/gui/signal_annotator2.py +25 -17
  24. celldetective/gui/styles.py +1 -0
  25. celldetective/gui/tableUI.py +1 -1
  26. celldetective/gui/workers.py +136 -0
  27. celldetective/io.py +54 -28
  28. celldetective/measure.py +112 -14
  29. celldetective/scripts/measure_cells.py +36 -46
  30. celldetective/scripts/segment_cells.py +35 -78
  31. celldetective/scripts/segment_cells_thresholds.py +21 -22
  32. celldetective/scripts/track_cells.py +43 -32
  33. celldetective/segmentation.py +16 -62
  34. celldetective/signals.py +11 -7
  35. celldetective/utils.py +587 -67
  36. {celldetective-1.3.6.post1.dist-info → celldetective-1.3.7.dist-info}/METADATA +1 -1
  37. {celldetective-1.3.6.post1.dist-info → celldetective-1.3.7.dist-info}/RECORD +41 -40
  38. {celldetective-1.3.6.post1.dist-info → celldetective-1.3.7.dist-info}/LICENSE +0 -0
  39. {celldetective-1.3.6.post1.dist-info → celldetective-1.3.7.dist-info}/WHEEL +0 -0
  40. {celldetective-1.3.6.post1.dist-info → celldetective-1.3.7.dist-info}/entry_points.txt +0 -0
  41. {celldetective-1.3.6.post1.dist-info → celldetective-1.3.7.dist-info}/top_level.txt +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: celldetective
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- Version: 1.3.6.post1
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+ Version: 1.3.7
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  Summary: description
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  Home-page: http://github.com/remyeltorro/celldetective
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  Author: Rémy Torro
@@ -1,57 +1,58 @@
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  celldetective/__init__.py,sha256=bi3SGTMo6s2qQBsJAaKy-a4xaGcTQVW8zsqaiX5XKeY,139
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  celldetective/__main__.py,sha256=bxTlSvbKhqn3LW_azd2baDCnDsgb37PAP9DfuAJ1_5M,1844
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- celldetective/_version.py,sha256=bW6H44PSm7DIqPxnn6PKr6QzSOJZU8d_cyKDCh6Mv18,28
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- celldetective/events.py,sha256=GtlFgfSQD8F7FBFCptWU0R8R3BL_UoMBzmGJ7IyAgeE,8143
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+ celldetective/_version.py,sha256=9peaXOar2qezOPJEKG6cD_A0aaXrzdVN8h-v6fBoBEk,22
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+ celldetective/events.py,sha256=UkjY_-THo6WviWWCLnDbma7jWOd_O9a60C4IOX2htG8,8254
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  celldetective/extra_properties.py,sha256=y556D6EMjLGhtjDqRoOTRGa85XxTIe0K1Asb26VZXmo,5643
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- celldetective/filters.py,sha256=-UuS_aH_JxEPMWlb7VAaIsNQUXlARhfZ1DL_qypGFA0,3892
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- celldetective/io.py,sha256=cNr7pg8MWGL9V28pfDjZsiriYnU19oFLnhC5P6JqT9k,122535
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- celldetective/measure.py,sha256=b0pZckV9dMJEUoLqvUfLmUWo7z0xPc0Xe4qnvaoq_KY,60066
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+ celldetective/filters.py,sha256=DT3MyqNBSj3EMtb74oZUirdonKcwcowjtehTT72mrrk,4181
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+ celldetective/io.py,sha256=bvusLoOJ_pxN4jUsad_MAQY7a1gXs7ZEO2aRM--E83o,123104
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+ celldetective/measure.py,sha256=qepAEl4XHcS0Jx6zeoRlPBG_pjYjfid2gLBRMhiyDyo,64445
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  celldetective/neighborhood.py,sha256=s-zVsfGnPlqs6HlDJCXRh21lLiPKbA_S1JC6uZvfG_0,56712
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  celldetective/preprocessing.py,sha256=Wlt_PJua97CpMuWe_M65znUmz_yjYPqWIcs2ZK_RLgk,44109
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  celldetective/relative_measurements.py,sha256=ZviXp6-z_SB60e7z3GznqfEngv70waOK0sMxm_q-JJA,30546
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- celldetective/segmentation.py,sha256=NjAVaVpZufpJ-LIvBx5UFH6j5kjRKE6EVLjttDrqaqs,30826
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- celldetective/signals.py,sha256=mrQjHA7xDgL6EUVk9U359sUwSgSvSCsdNJDt0truCA4,121574
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+ celldetective/segmentation.py,sha256=ONuAioeU4qGX7n_LoUVQuv8iHHD9N0D8Bjv2kDdMOrk,29411
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+ celldetective/signals.py,sha256=VYaJHJdLSJa8cyamTW0tvoX9nSH1V8BS687HOAwJKb4,121739
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  celldetective/tracking.py,sha256=babNFkxtYDwoAl_WJcZC-GYItafKShV2PLSWimxM6oA,40361
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- celldetective/utils.py,sha256=5nxfYnl0xsfocPg6BH2SmZ4n1jKMUUWXVZW3-xabXbk,89802
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+ celldetective/utils.py,sha256=MP2bGjb_XUIhT397TJQjcggJPgpGksyRcHJpu9VTW8Q,108422
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  celldetective/datasets/segmentation_annotations/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  celldetective/datasets/signal_annotations/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- celldetective/gui/InitWindow.py,sha256=sQSwfZ6SIQeZDQ_3KZoMO2MH9Fs9rhWeqxzEf9PFjEM,14534
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+ celldetective/gui/InitWindow.py,sha256=TPKWYczhPHvPKWg654sXnE9xCEx6U-oWX0_OJgLTWbU,15044
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  celldetective/gui/__init__.py,sha256=2_r2xfOj4_2xj0yBkCTIfzlF94AHKm-j6Pvpd7DddQc,989
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  celldetective/gui/about.py,sha256=FJZrj6C-p6uqp_3UaprKosuW-Sw9_HPNQAvFbis9Gdk,1749
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  celldetective/gui/analyze_block.py,sha256=h0sp7Tk3hZFM8w0yTidwIjZX4WRI-lQF3JCFObrLCPo,2761
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  celldetective/gui/btrack_options.py,sha256=tY0XiDcsI4KDgwZtcaP7HWLJ_isxamM-7sFX-m5Dcwk,44662
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  celldetective/gui/classifier_widget.py,sha256=UyElqL9Rq5cKcM6i8ZLGCqkMqqnSDaw6i_hRoV_7WSE,19817
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  celldetective/gui/configure_new_exp.py,sha256=sRBGhMoQUP8-XchmfV6VvuFHceS4Q8qPY2ua7DQOaHI,20754
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- celldetective/gui/control_panel.py,sha256=CKbn6K7_s_K6r-hJMAJmWhDjj8mrYhk_ycr8x_8DIDQ,21710
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- celldetective/gui/generic_signal_plot.py,sha256=iINeKvItGL4X8ONDRM7yv1zovEX1hhLreeOXbxiKTy0,36078
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- celldetective/gui/gui_utils.py,sha256=1-B5f1sij-3jM-Y9IuhoLH7Skcua3r6V0w8yNdX-Nr0,39358
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+ celldetective/gui/control_panel.py,sha256=1TWUCvEif19ZLy4pDUupPrGzIKnG6Tg6kWGp_R8OSG4,22045
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+ celldetective/gui/generic_signal_plot.py,sha256=Gv4KhA5vhbgVSj5jteE42T0aNCoQZtmIAUkEsMi6JNA,36309
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+ celldetective/gui/gui_utils.py,sha256=n9JVXBantJK3RFt8fQ7HJYKdCC4ezBMBwlgT5QT2I9o,39343
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  celldetective/gui/json_readers.py,sha256=Su3angSobroeGrrumGgQcs3Cr_9l9p52-Hfm3qneVcI,3664
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  celldetective/gui/layouts.py,sha256=XsqiHR58DXsG5SSD5S8KOtUv4yw-y-s2_wZx_XsHeJs,52013
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  celldetective/gui/measurement_options.py,sha256=cfiC4lq-XqY4Sa4Vkw5mys7JKaa9tE2BgeN8_k-SIDY,40355
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- celldetective/gui/neighborhood_options.py,sha256=IUzcE8RrnNbDuLebvIyUxN0-mL05SexlWPzqAWZDPuQ,19814
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+ celldetective/gui/neighborhood_options.py,sha256=FBNDvlzMPKp8s0Grxds90pCPHG1s27XrpMN0HV2gf0I,19839
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  celldetective/gui/plot_measurements.py,sha256=n0pDUcYcsKlSMaUaBSVplGziuWp_7jKaeXdREs-MqyI,50848
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- celldetective/gui/plot_signals_ui.py,sha256=ASHXrFr5ctCs5ppWmC7KqU1EtzqbvI8D1FKtvd2dAiQ,16495
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- celldetective/gui/process_block.py,sha256=OCEYCRd8s3rT9x4Rs9ut3s7cM4bv9spKjhvASRPyOgY,68746
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- celldetective/gui/retrain_segmentation_model_options.py,sha256=ACeQ_DdSLy1EK0z_S_9v-0HOiLXjUmrz4sdvHWZT6FI,23330
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- celldetective/gui/retrain_signal_model_options.py,sha256=XigNdGlNu3KWB_MYBcKQhfXjcWwVZNMmu0qmxNoo14E,21919
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+ celldetective/gui/plot_signals_ui.py,sha256=-yKpmmWi0CDKazn3v49ArvykdQbtGIXx0ZwQ4yO8-eY,16641
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+ celldetective/gui/process_block.py,sha256=l16GS_xTeSqWIxYZj1lc4EwC3WOhZsE4k-GOTBKZR0o,71188
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+ celldetective/gui/retrain_segmentation_model_options.py,sha256=7iawDN4kwq56Z-dX9kQe9tLW8B3YMrIW_D85LMAAYwk,23906
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+ celldetective/gui/retrain_signal_model_options.py,sha256=GCa0WKKsgmH2CFDHAKxPGbHtCE19p1_bbcWNasyZw5o,22482
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  celldetective/gui/seg_model_loader.py,sha256=vWvPMU6nkTiQfI-x2WjQHrdJGFdV4a4Ne-4YIOq_YZ8,18153
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- celldetective/gui/signal_annotator.py,sha256=xJh69pzOFGbM3V2ySXL2BSav6Tp2mhF0LyPBpFWgp7w,88892
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- celldetective/gui/signal_annotator2.py,sha256=0h7WUFnOEHXoyLobDDRcDcTIC-DIF9q2ykx6aI-5g1c,106339
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+ celldetective/gui/signal_annotator.py,sha256=9l_qbIO9V862eGk6mVOCXo0jsG8Z3WP9kx7wCBFGvKU,89014
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+ celldetective/gui/signal_annotator2.py,sha256=1OTGc6wKUDHitpRUOHuDMSoJbubLvh1sGR2YRN7oDeU,106289
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  celldetective/gui/signal_annotator_options.py,sha256=ztFFgA70SJ0QkntxYGsgDNCvSuSR5GjF7_J6pYVYc1g,11020
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- celldetective/gui/styles.py,sha256=awg5NfGWUoM4V_LpVlmPP7JorpofiLVNqLBv4zRy89E,5058
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+ celldetective/gui/styles.py,sha256=SZy_ACkA6QB_4ANyY1V0m1QF66C0SVGssOrwW1Qt1Aw,5076
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  celldetective/gui/survival_ui.py,sha256=J4ZYjX8ne0wT0ruQu9WL3WfLnRIAQalkaAR8ngb7PkI,14170
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- celldetective/gui/tableUI.py,sha256=0bWEECh6BCRV5K2jFaZe9c3H78vBUxYFppplKQiLteU,51022
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+ celldetective/gui/tableUI.py,sha256=89TB_U2l4rhYCpEr3RicratMOp74Spx3ioBeM5lnbHA,51021
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  celldetective/gui/thresholds_gui.py,sha256=VjCVBCDsNh_LoXfEqUn32nsYQwO9-Elh3Gl1RBv7acc,48756
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  celldetective/gui/viewers.py,sha256=mne5GLFAjv-vxMABXP7I9VhrJGtPnZj560HLdlwDZSU,47806
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- celldetective/gui/help/DL-segmentation-strategy.json,sha256=59jVtn8pECbCqPQwJifgViVYTF1AxLQDIkNJMS7CJuk,1143
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- celldetective/gui/help/Threshold-vs-DL.json,sha256=SELQk3qF8xcwmkX686Bqrr7i5KiXqN7r4jbUydCLRDU,603
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- celldetective/gui/help/cell-populations.json,sha256=wP0ekhokb9oHE3XqOQrC5ARewNgOlv0GJrQeVQyMJzg,1075
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- celldetective/gui/help/exp-structure.json,sha256=Q3z9-76VkQK77qxHRt2nUzE-nnM3yCKFXK3RMcjkeSI,1737
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- celldetective/gui/help/feature-btrack.json,sha256=2uU5R8HAvXfqjTieTwl3VzUb8Y5UGO3Qsb3_6UoUbs0,589
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- celldetective/gui/help/neighborhood.json,sha256=aSGMwK3ZeGGXcoAgvmJMs9RpUWXOdxws2ajJ4MdQBOM,1096
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- celldetective/gui/help/prefilter-for-segmentation.json,sha256=1-hgr3H5Sr91bL-3o_dQKFibmxfTFuO6btkNhAS6MGY,610
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- celldetective/gui/help/preprocessing.json,sha256=k4gWxCIE9CMXtBQl9W0ZrbQwhPF1QIxJdnDqtTiYN-c,5252
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- celldetective/gui/help/propagate-classification.json,sha256=cnZpY7iVFZzbHy1uIxWwtL-hnUEBV4JibVbQG5Zu66o,1285
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+ celldetective/gui/workers.py,sha256=P4qUMXuCtGcggGmJr3VitAPSfRG30wkJ1B0pfcdGbKg,4225
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+ celldetective/gui/help/DL-segmentation-strategy.json,sha256=PZD9xXjrwbX3TiudHJPuvcyZD28o4k-fVgeTd7dBKzI,1583
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+ celldetective/gui/help/Threshold-vs-DL.json,sha256=rrFnZT2DhyS7g1nIDWeUV8-HH7M2Sv8D7sDCGBU1M_0,934
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+ celldetective/gui/help/cell-populations.json,sha256=e5yJp75rKsYkGVuO8stXxU1TznkADw71djdMUs21gd8,1200
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+ celldetective/gui/help/exp-structure.json,sha256=61zZAHms7se4Vtuma904xKMsNlWuTOIeF24cbwQiYQg,1973
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+ celldetective/gui/help/feature-btrack.json,sha256=wvKFiM38AvfQ2QsePDjTflOovqq04CWYcK2QXZhHs-A,693
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+ celldetective/gui/help/neighborhood.json,sha256=37ToEYLaV5Vodb38Jt-peknCNuvobhMVFdhAVXCthCg,1269
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+ celldetective/gui/help/prefilter-for-segmentation.json,sha256=NEL6O2nj_l8ImjMzzX6qqg7U9QV01sgZMFvkGHUiG4E,791
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+ celldetective/gui/help/preprocessing.json,sha256=M-AxW6zYB5oDiQdoc9wcky8C5p0m6uv-CJMLpUVboew,4716
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+ celldetective/gui/help/propagate-classification.json,sha256=F7Ir1mtgRVTXWLN7n3ny3vrU01LFNeDh5dN2QBIXHqE,1227
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  celldetective/gui/help/track-postprocessing.json,sha256=VaGd8EEkA33OL-EI3NXWZ8yHeWWyUeImDF5yAjsVYGA,3990
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  celldetective/gui/help/tracking.json,sha256=yIAoOToqCSQ_XF4gwEZCcyXcvQ3mROju263ZPDvlUyY,776
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  celldetective/icons/logo-large.png,sha256=FXSwV3u6zEKcfpuSn4unnqB0oUnN9cHqQ9BCKWytrpg,36631
@@ -80,11 +81,11 @@ celldetective/models/tracking_configs/no_z_motion.json,sha256=b4RWOJ0w6Y2e0vJYwK
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  celldetective/models/tracking_configs/ricm.json,sha256=L-vmwCR1f89U-qnH2Ms0cBfPFR_dxIWoe2ccH8V-QBA,2727
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  celldetective/models/tracking_configs/ricm2.json,sha256=DDjJ6ScYcDWvlsy7ujPID8v8H28vcNcMuZmNR8XmGxo,2718
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  celldetective/scripts/analyze_signals.py,sha256=YE05wZujl2hQFWkvqATBcCx-cAd_V3RxnvKoh0SB7To,2194
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- celldetective/scripts/measure_cells.py,sha256=szZ79zWPWbr-13zU3RPIYnsUwW4xAx-YwKKbvhulTK4,12606
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+ celldetective/scripts/measure_cells.py,sha256=GvuHrSb3S-JnUjBaACx84BhUd_vUrwEHiSgDV9BoXXE,11766
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  celldetective/scripts/measure_relative.py,sha256=L_NjIUfHSGupkAKLZkubBHJdZh0ugPhCTJem80b0zMM,4261
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- celldetective/scripts/segment_cells.py,sha256=CxAuqmSslDoq1zFlZrgt4-ZORVCv-bF-kdXHWQgf8MY,8216
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- celldetective/scripts/segment_cells_thresholds.py,sha256=6ERg-hxdHMSgXPQSBPtYt2lccTlkz9ZLktYgb57Avmw,5168
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- celldetective/scripts/track_cells.py,sha256=r_EaOIPgwGewHsvcbLaqTkxp4PQ4uDLq-E0bbUDZ1p4,8581
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+ celldetective/scripts/segment_cells.py,sha256=AZfHqig0WBMkAh9ho7JHmjM9vMO-EiPVviTHJcDj5Mw,6954
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+ celldetective/scripts/segment_cells_thresholds.py,sha256=lsW5hsHenNPiyIwZuZHipeCN2Wer69VcLko5rS96GAU,5118
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+ celldetective/scripts/track_cells.py,sha256=_OPfn9BsbvdpAU4dg36SXmOTx_BkDkZL4N05X0_Tig4,8795
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  tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -99,9 +100,9 @@ tests/test_segmentation.py,sha256=k1b_zIZdlytEdJcHjAUQEO3gTBAHtv5WvrwQN2xD4kc,34
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  tests/test_tracking.py,sha256=8hebWSqEIuttD1ABn-6dKCT7EXKRR7-4RwyFWi1WPFo,8800
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  tests/test_utils.py,sha256=NKRCAC1d89aBK5cWjTb7-pInYow901RrT-uBlIdz4KI,3692
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- celldetective-1.3.6.post1.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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- celldetective-1.3.6.post1.dist-info/METADATA,sha256=wbiMcVjmdJpkTzkpfmGiWwS5sgeRZ4H5dEHPIWUBCqM,10563
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- celldetective-1.3.6.post1.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
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- celldetective-1.3.6.post1.dist-info/entry_points.txt,sha256=2NU6_EOByvPxqBbCvjwxlVlvnQreqZ3BKRCVIKEv3dg,62
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- celldetective-1.3.6.post1.dist-info/top_level.txt,sha256=6rsIKKfGMKgud7HPuATcpq6EhdXwcg_yknBVWn9x4C4,20
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- celldetective-1.3.6.post1.dist-info/RECORD,,
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+ celldetective-1.3.7.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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+ celldetective-1.3.7.dist-info/METADATA,sha256=Swuxnzmsc1hlGqle34ByN06jdhVDap-Q5rC3khzA04E,10557
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+ celldetective-1.3.7.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
106
+ celldetective-1.3.7.dist-info/entry_points.txt,sha256=2NU6_EOByvPxqBbCvjwxlVlvnQreqZ3BKRCVIKEv3dg,62
107
+ celldetective-1.3.7.dist-info/top_level.txt,sha256=6rsIKKfGMKgud7HPuATcpq6EhdXwcg_yknBVWn9x4C4,20
108
+ celldetective-1.3.7.dist-info/RECORD,,