celldetective 1.3.4.post1__py3-none-any.whl → 1.3.5__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- celldetective/_version.py +1 -1
- celldetective/events.py +10 -5
- celldetective/gui/classifier_widget.py +29 -4
- celldetective/gui/control_panel.py +3 -2
- celldetective/gui/generic_signal_plot.py +2 -6
- celldetective/gui/gui_utils.py +34 -6
- celldetective/gui/measurement_options.py +1 -30
- celldetective/gui/neighborhood_options.py +1 -1
- celldetective/gui/plot_signals_ui.py +3 -4
- celldetective/gui/process_block.py +8 -6
- celldetective/gui/signal_annotator.py +4 -2
- celldetective/gui/signal_annotator2.py +141 -191
- celldetective/gui/survival_ui.py +122 -33
- celldetective/gui/tableUI.py +26 -12
- celldetective/io.py +1059 -156
- celldetective/measure.py +151 -53
- celldetective/preprocessing.py +2 -2
- celldetective/relative_measurements.py +6 -9
- celldetective/scripts/measure_cells.py +13 -3
- celldetective/scripts/segment_cells.py +0 -1
- celldetective/signals.py +9 -7
- celldetective/tracking.py +52 -28
- celldetective/utils.py +23 -5
- {celldetective-1.3.4.post1.dist-info → celldetective-1.3.5.dist-info}/METADATA +2 -2
- {celldetective-1.3.4.post1.dist-info → celldetective-1.3.5.dist-info}/RECORD +29 -29
- {celldetective-1.3.4.post1.dist-info → celldetective-1.3.5.dist-info}/LICENSE +0 -0
- {celldetective-1.3.4.post1.dist-info → celldetective-1.3.5.dist-info}/WHEEL +0 -0
- {celldetective-1.3.4.post1.dist-info → celldetective-1.3.5.dist-info}/entry_points.txt +0 -0
- {celldetective-1.3.4.post1.dist-info → celldetective-1.3.5.dist-info}/top_level.txt +0 -0
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.1
|
|
2
2
|
Name: celldetective
|
|
3
|
-
Version: 1.3.
|
|
3
|
+
Version: 1.3.5
|
|
4
4
|
Summary: description
|
|
5
5
|
Home-page: http://github.com/remyeltorro/celldetective
|
|
6
6
|
Author: Rémy Torro
|
|
@@ -20,7 +20,7 @@ Requires-Dist: cellpose<3
|
|
|
20
20
|
Requires-Dist: scikit-learn
|
|
21
21
|
Requires-Dist: btrack
|
|
22
22
|
Requires-Dist: tensorflow~=2.15.0
|
|
23
|
-
Requires-Dist: napari
|
|
23
|
+
Requires-Dist: napari<0.6.0
|
|
24
24
|
Requires-Dist: tqdm
|
|
25
25
|
Requires-Dist: mahotas
|
|
26
26
|
Requires-Dist: fonticon-materialdesignicons6
|
|
@@ -1,18 +1,18 @@
|
|
|
1
1
|
celldetective/__init__.py,sha256=bi3SGTMo6s2qQBsJAaKy-a4xaGcTQVW8zsqaiX5XKeY,139
|
|
2
2
|
celldetective/__main__.py,sha256=bxTlSvbKhqn3LW_azd2baDCnDsgb37PAP9DfuAJ1_5M,1844
|
|
3
|
-
celldetective/_version.py,sha256=
|
|
4
|
-
celldetective/events.py,sha256=
|
|
3
|
+
celldetective/_version.py,sha256=tdqvkGH0OryRjjXzO3HS5DyYol-VTO9fC8m43nB2PgI,22
|
|
4
|
+
celldetective/events.py,sha256=GtlFgfSQD8F7FBFCptWU0R8R3BL_UoMBzmGJ7IyAgeE,8143
|
|
5
5
|
celldetective/extra_properties.py,sha256=y556D6EMjLGhtjDqRoOTRGa85XxTIe0K1Asb26VZXmo,5643
|
|
6
6
|
celldetective/filters.py,sha256=9w4JyPH2cISRu7gtUDVsm9whiMMWxuc1vwhfaq3zWkY,3683
|
|
7
|
-
celldetective/io.py,sha256=
|
|
8
|
-
celldetective/measure.py,sha256
|
|
7
|
+
celldetective/io.py,sha256=ddySxBBpSmsuEKk2L0F1cygs3-V02EHdZVoeLjRlsx8,121897
|
|
8
|
+
celldetective/measure.py,sha256=-yGIzCkgwQ5jrkHo9-v7Zca-FxrFwdq-vehEVVBxgkw,61386
|
|
9
9
|
celldetective/neighborhood.py,sha256=s-zVsfGnPlqs6HlDJCXRh21lLiPKbA_S1JC6uZvfG_0,56712
|
|
10
|
-
celldetective/preprocessing.py,sha256=
|
|
11
|
-
celldetective/relative_measurements.py,sha256=
|
|
10
|
+
celldetective/preprocessing.py,sha256=Wlt_PJua97CpMuWe_M65znUmz_yjYPqWIcs2ZK_RLgk,44109
|
|
11
|
+
celldetective/relative_measurements.py,sha256=ZviXp6-z_SB60e7z3GznqfEngv70waOK0sMxm_q-JJA,30546
|
|
12
12
|
celldetective/segmentation.py,sha256=NjAVaVpZufpJ-LIvBx5UFH6j5kjRKE6EVLjttDrqaqs,30826
|
|
13
|
-
celldetective/signals.py,sha256=
|
|
14
|
-
celldetective/tracking.py,sha256=
|
|
15
|
-
celldetective/utils.py,sha256=
|
|
13
|
+
celldetective/signals.py,sha256=mrQjHA7xDgL6EUVk9U359sUwSgSvSCsdNJDt0truCA4,121574
|
|
14
|
+
celldetective/tracking.py,sha256=FMN64J52F5rDha2fW3rGOjjtLBg3VcmNlNeUU3shfQE,39282
|
|
15
|
+
celldetective/utils.py,sha256=aIvwAr6jpFBj9PiIFep87Nz7xwfOaCXrKBaPtC0ESZg,89747
|
|
16
16
|
celldetective/datasets/segmentation_annotations/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
|
17
17
|
celldetective/datasets/signal_annotations/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
|
18
18
|
celldetective/gui/InitWindow.py,sha256=sQSwfZ6SIQeZDQ_3KZoMO2MH9Fs9rhWeqxzEf9PFjEM,14534
|
|
@@ -20,27 +20,27 @@ celldetective/gui/__init__.py,sha256=2_r2xfOj4_2xj0yBkCTIfzlF94AHKm-j6Pvpd7DddQc
|
|
|
20
20
|
celldetective/gui/about.py,sha256=FJZrj6C-p6uqp_3UaprKosuW-Sw9_HPNQAvFbis9Gdk,1749
|
|
21
21
|
celldetective/gui/analyze_block.py,sha256=h0sp7Tk3hZFM8w0yTidwIjZX4WRI-lQF3JCFObrLCPo,2761
|
|
22
22
|
celldetective/gui/btrack_options.py,sha256=OrvbG5coZhLRk5jtXiLFJu34z1hWHN9kHkBiZ7XMZoI,39269
|
|
23
|
-
celldetective/gui/classifier_widget.py,sha256=
|
|
23
|
+
celldetective/gui/classifier_widget.py,sha256=tE_wP8Z4sdxG9l4B46G0pJP1_at833czMpC-SIrkV7Q,19429
|
|
24
24
|
celldetective/gui/configure_new_exp.py,sha256=Eyr-M4FH-4xrUJbIGNdKXAtXb_ULr8lCol26JSzXEww,20125
|
|
25
|
-
celldetective/gui/control_panel.py,sha256=
|
|
26
|
-
celldetective/gui/generic_signal_plot.py,sha256=
|
|
27
|
-
celldetective/gui/gui_utils.py,sha256=
|
|
25
|
+
celldetective/gui/control_panel.py,sha256=XoKGOXbsgoamHcd57RqmIOmOiDT3aeAU8YNSmJOVJsE,21647
|
|
26
|
+
celldetective/gui/generic_signal_plot.py,sha256=iINeKvItGL4X8ONDRM7yv1zovEX1hhLreeOXbxiKTy0,36078
|
|
27
|
+
celldetective/gui/gui_utils.py,sha256=wogXJmUA7aKQ1Uuy9L7xwlhBme5_3GXOD9jv-TpSoE4,34924
|
|
28
28
|
celldetective/gui/json_readers.py,sha256=Su3angSobroeGrrumGgQcs3Cr_9l9p52-Hfm3qneVcI,3664
|
|
29
29
|
celldetective/gui/layouts.py,sha256=XsqiHR58DXsG5SSD5S8KOtUv4yw-y-s2_wZx_XsHeJs,52013
|
|
30
|
-
celldetective/gui/measurement_options.py,sha256=
|
|
31
|
-
celldetective/gui/neighborhood_options.py,sha256=
|
|
30
|
+
celldetective/gui/measurement_options.py,sha256=LS0TAhRqnV35Syk3BA3GHZSosNFHhm1o0RYi8aAV01U,38288
|
|
31
|
+
celldetective/gui/neighborhood_options.py,sha256=IUzcE8RrnNbDuLebvIyUxN0-mL05SexlWPzqAWZDPuQ,19814
|
|
32
32
|
celldetective/gui/plot_measurements.py,sha256=n0pDUcYcsKlSMaUaBSVplGziuWp_7jKaeXdREs-MqyI,50848
|
|
33
|
-
celldetective/gui/plot_signals_ui.py,sha256=
|
|
34
|
-
celldetective/gui/process_block.py,sha256=
|
|
33
|
+
celldetective/gui/plot_signals_ui.py,sha256=ASHXrFr5ctCs5ppWmC7KqU1EtzqbvI8D1FKtvd2dAiQ,16495
|
|
34
|
+
celldetective/gui/process_block.py,sha256=OCEYCRd8s3rT9x4Rs9ut3s7cM4bv9spKjhvASRPyOgY,68746
|
|
35
35
|
celldetective/gui/retrain_segmentation_model_options.py,sha256=ACeQ_DdSLy1EK0z_S_9v-0HOiLXjUmrz4sdvHWZT6FI,23330
|
|
36
36
|
celldetective/gui/retrain_signal_model_options.py,sha256=XigNdGlNu3KWB_MYBcKQhfXjcWwVZNMmu0qmxNoo14E,21919
|
|
37
37
|
celldetective/gui/seg_model_loader.py,sha256=vWvPMU6nkTiQfI-x2WjQHrdJGFdV4a4Ne-4YIOq_YZ8,18153
|
|
38
|
-
celldetective/gui/signal_annotator.py,sha256=
|
|
39
|
-
celldetective/gui/signal_annotator2.py,sha256=
|
|
38
|
+
celldetective/gui/signal_annotator.py,sha256=zs7lYGx64HPDomsccAUNuWV95qMTRtZJie7bH_fyTco,88733
|
|
39
|
+
celldetective/gui/signal_annotator2.py,sha256=C8Cv_6lS9fLcqxprN9TsGkqTNV6YZbXrbCVi7YyY79Y,106179
|
|
40
40
|
celldetective/gui/signal_annotator_options.py,sha256=ztFFgA70SJ0QkntxYGsgDNCvSuSR5GjF7_J6pYVYc1g,11020
|
|
41
41
|
celldetective/gui/styles.py,sha256=awg5NfGWUoM4V_LpVlmPP7JorpofiLVNqLBv4zRy89E,5058
|
|
42
|
-
celldetective/gui/survival_ui.py,sha256=
|
|
43
|
-
celldetective/gui/tableUI.py,sha256=
|
|
42
|
+
celldetective/gui/survival_ui.py,sha256=rAf7w9NqcclEVq8-WEv6gTQIOtqbxmnksrkLr9ERt_8,14220
|
|
43
|
+
celldetective/gui/tableUI.py,sha256=0bWEECh6BCRV5K2jFaZe9c3H78vBUxYFppplKQiLteU,51022
|
|
44
44
|
celldetective/gui/thresholds_gui.py,sha256=6Lgr_CK2LBn_gMsWf0gIQvQIQSMg3oIhFfknFeg8Fh4,50721
|
|
45
45
|
celldetective/gui/viewers.py,sha256=0KmtAKZUNY5xpKFcFajgc1Jbnf_86rw_ooX6UrMmEHc,46328
|
|
46
46
|
celldetective/gui/help/DL-segmentation-strategy.json,sha256=59jVtn8pECbCqPQwJifgViVYTF1AxLQDIkNJMS7CJuk,1143
|
|
@@ -80,9 +80,9 @@ celldetective/models/tracking_configs/no_z_motion.json,sha256=b4RWOJ0w6Y2e0vJYwK
|
|
|
80
80
|
celldetective/models/tracking_configs/ricm.json,sha256=L-vmwCR1f89U-qnH2Ms0cBfPFR_dxIWoe2ccH8V-QBA,2727
|
|
81
81
|
celldetective/models/tracking_configs/ricm2.json,sha256=DDjJ6ScYcDWvlsy7ujPID8v8H28vcNcMuZmNR8XmGxo,2718
|
|
82
82
|
celldetective/scripts/analyze_signals.py,sha256=YE05wZujl2hQFWkvqATBcCx-cAd_V3RxnvKoh0SB7To,2194
|
|
83
|
-
celldetective/scripts/measure_cells.py,sha256=
|
|
83
|
+
celldetective/scripts/measure_cells.py,sha256=szZ79zWPWbr-13zU3RPIYnsUwW4xAx-YwKKbvhulTK4,12606
|
|
84
84
|
celldetective/scripts/measure_relative.py,sha256=L_NjIUfHSGupkAKLZkubBHJdZh0ugPhCTJem80b0zMM,4261
|
|
85
|
-
celldetective/scripts/segment_cells.py,sha256=
|
|
85
|
+
celldetective/scripts/segment_cells.py,sha256=CxAuqmSslDoq1zFlZrgt4-ZORVCv-bF-kdXHWQgf8MY,8216
|
|
86
86
|
celldetective/scripts/segment_cells_thresholds.py,sha256=6ERg-hxdHMSgXPQSBPtYt2lccTlkz9ZLktYgb57Avmw,5168
|
|
87
87
|
celldetective/scripts/track_cells.py,sha256=ezNpenAYBz010iMZNRIk0qwGAceiXRLvY7ZxoQcT2IM,8052
|
|
88
88
|
celldetective/scripts/train_segmentation_model.py,sha256=XExaGg8kkdirgN206J0mwiWtqeRE076-Ld2b89tReAI,9229
|
|
@@ -99,9 +99,9 @@ tests/test_segmentation.py,sha256=k1b_zIZdlytEdJcHjAUQEO3gTBAHtv5WvrwQN2xD4kc,34
|
|
|
99
99
|
tests/test_signals.py,sha256=No4cah6KxplhDcKXnU8RrA7eDla4hWw6ccf7xGnBokU,3599
|
|
100
100
|
tests/test_tracking.py,sha256=8hebWSqEIuttD1ABn-6dKCT7EXKRR7-4RwyFWi1WPFo,8800
|
|
101
101
|
tests/test_utils.py,sha256=NKRCAC1d89aBK5cWjTb7-pInYow901RrT-uBlIdz4KI,3692
|
|
102
|
-
celldetective-1.3.
|
|
103
|
-
celldetective-1.3.
|
|
104
|
-
celldetective-1.3.
|
|
105
|
-
celldetective-1.3.
|
|
106
|
-
celldetective-1.3.
|
|
107
|
-
celldetective-1.3.
|
|
102
|
+
celldetective-1.3.5.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
|
|
103
|
+
celldetective-1.3.5.dist-info/METADATA,sha256=X49VhqG6OgjUN1agfnFmaHfK62bk3gGZPgQlaEZBw4g,10534
|
|
104
|
+
celldetective-1.3.5.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
|
|
105
|
+
celldetective-1.3.5.dist-info/entry_points.txt,sha256=2NU6_EOByvPxqBbCvjwxlVlvnQreqZ3BKRCVIKEv3dg,62
|
|
106
|
+
celldetective-1.3.5.dist-info/top_level.txt,sha256=6rsIKKfGMKgud7HPuATcpq6EhdXwcg_yknBVWn9x4C4,20
|
|
107
|
+
celldetective-1.3.5.dist-info/RECORD,,
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|