celldetective 1.3.3.post1__py3-none-any.whl → 1.3.4__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (35) hide show
  1. celldetective/__main__.py +30 -4
  2. celldetective/_version.py +1 -1
  3. celldetective/extra_properties.py +21 -0
  4. celldetective/filters.py +15 -2
  5. celldetective/gui/InitWindow.py +28 -34
  6. celldetective/gui/analyze_block.py +3 -498
  7. celldetective/gui/classifier_widget.py +1 -1
  8. celldetective/gui/control_panel.py +98 -27
  9. celldetective/gui/generic_signal_plot.py +35 -18
  10. celldetective/gui/gui_utils.py +143 -2
  11. celldetective/gui/layouts.py +7 -6
  12. celldetective/gui/measurement_options.py +3 -11
  13. celldetective/gui/plot_measurements.py +5 -13
  14. celldetective/gui/plot_signals_ui.py +30 -30
  15. celldetective/gui/process_block.py +61 -103
  16. celldetective/gui/signal_annotator.py +50 -32
  17. celldetective/gui/signal_annotator2.py +7 -4
  18. celldetective/gui/styles.py +13 -0
  19. celldetective/gui/survival_ui.py +8 -21
  20. celldetective/gui/tableUI.py +1 -2
  21. celldetective/gui/thresholds_gui.py +0 -6
  22. celldetective/gui/viewers.py +1 -5
  23. celldetective/io.py +31 -4
  24. celldetective/measure.py +8 -5
  25. celldetective/neighborhood.py +0 -2
  26. celldetective/scripts/measure_cells.py +21 -9
  27. celldetective/signals.py +77 -66
  28. celldetective/tracking.py +19 -13
  29. {celldetective-1.3.3.post1.dist-info → celldetective-1.3.4.dist-info}/METADATA +2 -1
  30. {celldetective-1.3.3.post1.dist-info → celldetective-1.3.4.dist-info}/RECORD +35 -35
  31. tests/test_qt.py +5 -3
  32. {celldetective-1.3.3.post1.dist-info → celldetective-1.3.4.dist-info}/LICENSE +0 -0
  33. {celldetective-1.3.3.post1.dist-info → celldetective-1.3.4.dist-info}/WHEEL +0 -0
  34. {celldetective-1.3.3.post1.dist-info → celldetective-1.3.4.dist-info}/entry_points.txt +0 -0
  35. {celldetective-1.3.3.post1.dist-info → celldetective-1.3.4.dist-info}/top_level.txt +0 -0
{celldetective-1.3.3.post1.dist-info → celldetective-1.3.4.dist-info}/RECORD RENAMED
@@ -1,48 +1,48 @@
1
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  celldetective/__init__.py,sha256=bi3SGTMo6s2qQBsJAaKy-a4xaGcTQVW8zsqaiX5XKeY,139
2
- celldetective/__main__.py,sha256=_H9B620ntENFx9RBvlV6ybxpvtHzCbv5NnIPmDBr9Z0,1127
3
- celldetective/_version.py,sha256=mDV9xbwx4cdW0zTkJ0d0anqj6e9ntj3IW5BlFM6Gw6A,28
2
+ celldetective/__main__.py,sha256=bxTlSvbKhqn3LW_azd2baDCnDsgb37PAP9DfuAJ1_5M,1844
3
+ celldetective/_version.py,sha256=U6E-HRsrit7kgSGgIeTI2eMUeyUCny5DH8LDV4I1o0g,22
4
4
  celldetective/events.py,sha256=R6GDtiH0ZuEbad0R-nrlTHmho0Hly3QyyVYx2dD__P0,8051
5
- celldetective/extra_properties.py,sha256=88JtyoY883ibon-rqtCX_BCHOpo0MTGfiLciIR7jM24,5176
6
- celldetective/filters.py,sha256=b0qKwHor1fvNA_dHovP17nQz8EsW5YlyhT2TJnayn08,3615
7
- celldetective/io.py,sha256=zSiXczHEa_RwfXu5joHT8zThZ0V7bCkYPutHgZGdBzs,90030
8
- celldetective/measure.py,sha256=b0ZiTm_lrM1geInh8F1co9ef2w1oXQuLx7ACTo6vFIU,57358
9
- celldetective/neighborhood.py,sha256=66fsOPDtjbrUTww97wVFmPk-UZakJgglua8O1Jl-RC4,56745
5
+ celldetective/extra_properties.py,sha256=y556D6EMjLGhtjDqRoOTRGa85XxTIe0K1Asb26VZXmo,5643
6
+ celldetective/filters.py,sha256=9w4JyPH2cISRu7gtUDVsm9whiMMWxuc1vwhfaq3zWkY,3683
7
+ celldetective/io.py,sha256=_SO32G5Sc60vHQhQj7gXvDNTXjVd1uZ8x1HnFxCYU0g,90833
8
+ celldetective/measure.py,sha256=PXi13O6wjXbgj53o-C8DEWLVkmy9qb4vocmq1irPVV0,57450
9
+ celldetective/neighborhood.py,sha256=s-zVsfGnPlqs6HlDJCXRh21lLiPKbA_S1JC6uZvfG_0,56712
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  celldetective/preprocessing.py,sha256=WmetQCgmHK6fo8AuwESPLab05WgeIy8ElBs-9KM-Cco,44081
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  celldetective/relative_measurements.py,sha256=av5DiGlGsbILPav8aVcFlhbmbPLPZPxCB5qQejzhiRY,30400
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  celldetective/segmentation.py,sha256=NjAVaVpZufpJ-LIvBx5UFH6j5kjRKE6EVLjttDrqaqs,30826
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- celldetective/signals.py,sha256=XGBTyAPVp7hhXDK1qRFrC4H2U65jj2nBR4FQJ4LvUvA,121028
14
- celldetective/tracking.py,sha256=zZ9J1plUCTjKuK4HAPiuj3BysoR6hLehqYVsBEqhCnk,37995
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+ celldetective/signals.py,sha256=ngBcl6xYlLX4KE7UFgLDzugmoJvrKG7URSPzlhUFNVE,121461
14
+ celldetective/tracking.py,sha256=e6XMunjVRhBnv1cRF66hkK-Hbti5KyPrs2mnR6qKpvU,38027
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  celldetective/utils.py,sha256=oP_GHPdJJHK9s8sIlzKEXfTjCvzxAifdYYynkSMfu7A,89145
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  celldetective/datasets/segmentation_annotations/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  celldetective/datasets/signal_annotations/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- celldetective/gui/InitWindow.py,sha256=OyEyWF6KJ4YzGK-8ZeMwYmPEG1maHcHlxmdsCJyUiEs,14963
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+ celldetective/gui/InitWindow.py,sha256=sQSwfZ6SIQeZDQ_3KZoMO2MH9Fs9rhWeqxzEf9PFjEM,14534
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  celldetective/gui/__init__.py,sha256=2_r2xfOj4_2xj0yBkCTIfzlF94AHKm-j6Pvpd7DddQc,989
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  celldetective/gui/about.py,sha256=FJZrj6C-p6uqp_3UaprKosuW-Sw9_HPNQAvFbis9Gdk,1749
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- celldetective/gui/analyze_block.py,sha256=sat8RECEeZxlaconZZIxI0IrIjwJo121PcBXqJmA1-o,24756
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+ celldetective/gui/analyze_block.py,sha256=h0sp7Tk3hZFM8w0yTidwIjZX4WRI-lQF3JCFObrLCPo,2761
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  celldetective/gui/btrack_options.py,sha256=OrvbG5coZhLRk5jtXiLFJu34z1hWHN9kHkBiZ7XMZoI,39269
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- celldetective/gui/classifier_widget.py,sha256=4239jKQb1uZMQU6iBBicavE05QAgmBQBM0YnmDesoPs,18430
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+ celldetective/gui/classifier_widget.py,sha256=mo7Gel3DKhFTUt184WvF0AOsw4HQ7kC8qrkSf8jr3hY,18412
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  celldetective/gui/configure_new_exp.py,sha256=Eyr-M4FH-4xrUJbIGNdKXAtXb_ULr8lCol26JSzXEww,20125
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- celldetective/gui/control_panel.py,sha256=5bU9n1bMiLrtrT9YH8-UfV5dJoOOtZejFcbHFkgX5NY,19185
26
- celldetective/gui/generic_signal_plot.py,sha256=KPJU5uP7uHxWQ6txmZx6gFalGPGxC165LSsx7AvB7zA,35605
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- celldetective/gui/gui_utils.py,sha256=og9iz2DkkJc_4UZmnvhN2oCMMPbJVnx-FAF10JfR8Eo,30441
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+ celldetective/gui/control_panel.py,sha256=Xr8W37KkRoR2R4ILsZbclnU6-g3WP1WjjTz6k39PN_8,21645
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+ celldetective/gui/generic_signal_plot.py,sha256=cfPvNcLtsVp3xvKyOg1ekMKXcomN6fEnlowUnXrYK2c,36293
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+ celldetective/gui/gui_utils.py,sha256=b6L4mThjN8upgXx4YeNRrfSSCF2l1epb_uEU8cc31F8,34171
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  celldetective/gui/json_readers.py,sha256=Su3angSobroeGrrumGgQcs3Cr_9l9p52-Hfm3qneVcI,3664
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- celldetective/gui/layouts.py,sha256=f_MoRPtl6e1UAsSTVidCSNk4_hoz1me_Z1KFaia29TQ,51783
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- celldetective/gui/measurement_options.py,sha256=4jnTv3dOeazEzWdsKgAmJaHp_dhalr6pDg8MxE3L_L4,39699
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+ celldetective/gui/layouts.py,sha256=XsqiHR58DXsG5SSD5S8KOtUv4yw-y-s2_wZx_XsHeJs,52013
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+ celldetective/gui/measurement_options.py,sha256=MnJ9dToJb-_UppqHEyFoIvqY8M2cneTGmqxMToeTJ48,39579
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  celldetective/gui/neighborhood_options.py,sha256=BvWwsIX1KWogUgHWRZptqY3ZRmH1aj7r8tiLmbRFhW4,19783
32
- celldetective/gui/plot_measurements.py,sha256=SBFkY3542hW4H_vllOCMxMOgBz09KUE2FLhhgI8avXk,51024
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- celldetective/gui/plot_signals_ui.py,sha256=i3ulnd6_dyFDRRy8RLO-fC6zwkbYjMXLYRc8rTYKTlE,15981
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- celldetective/gui/process_block.py,sha256=0wD9ffvZwZgnZ79R2BV_It7lbdk8bvOJs658uDfAsBo,69494
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+ celldetective/gui/plot_measurements.py,sha256=n0pDUcYcsKlSMaUaBSVplGziuWp_7jKaeXdREs-MqyI,50848
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+ celldetective/gui/plot_signals_ui.py,sha256=dLClQYdQcs98Dq6RWixWXM7_iS67CicOe695bA9LM-w,16447
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+ celldetective/gui/process_block.py,sha256=tk3zhhXhutszmFP3T7zbXnoCOZRbFUHPBR4cNNaHQOk,68683
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  celldetective/gui/retrain_segmentation_model_options.py,sha256=ACeQ_DdSLy1EK0z_S_9v-0HOiLXjUmrz4sdvHWZT6FI,23330
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  celldetective/gui/retrain_signal_model_options.py,sha256=XigNdGlNu3KWB_MYBcKQhfXjcWwVZNMmu0qmxNoo14E,21919
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  celldetective/gui/seg_model_loader.py,sha256=vWvPMU6nkTiQfI-x2WjQHrdJGFdV4a4Ne-4YIOq_YZ8,18153
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- celldetective/gui/signal_annotator.py,sha256=uzX06JYJOCFm4EytQRV2_JR8orbjDh6NjWberQePiGg,88244
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- celldetective/gui/signal_annotator2.py,sha256=Phft2_mjwtadd_BFNnZwofOGtrzXL9AEBG46hHvlZow,108888
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+ celldetective/gui/signal_annotator.py,sha256=gZtuWoVWjaIzxy5SL1Cg2rBrsH9-s-oYSxJe7CQeEiY,88656
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+ celldetective/gui/signal_annotator2.py,sha256=fAgkNexxvcnY4KvIxtgHKF3B9K-wsgfA8KbkALq4UPY,108945
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  celldetective/gui/signal_annotator_options.py,sha256=ztFFgA70SJ0QkntxYGsgDNCvSuSR5GjF7_J6pYVYc1g,11020
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- celldetective/gui/styles.py,sha256=fup0_U1Zk0IJAjyruHde_r-X7d7cTMcrpPLPl-HuKAM,4820
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- celldetective/gui/survival_ui.py,sha256=SJV-HIcA0hg_ZvyTdxbutvkUwuCSnx2TI3hNHn3AtZE,10362
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- celldetective/gui/tableUI.py,sha256=kkgqxopWuC8nnTFPVkf09_h9176OfBmRMZ3E6AsyQIc,50531
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- celldetective/gui/thresholds_gui.py,sha256=YHtgTDVNM0H-4bKwrRVs5yFAX4wgp5DSfjjfm0RGUKA,50849
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- celldetective/gui/viewers.py,sha256=WdNb9J7hNtTvl5wpdmJbWeXWeE0hz06B0wOAOMt1_10,46466
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+ celldetective/gui/styles.py,sha256=awg5NfGWUoM4V_LpVlmPP7JorpofiLVNqLBv4zRy89E,5058
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+ celldetective/gui/survival_ui.py,sha256=7qUenqEIaWEwdf-nKE1gN0LAdybgQbRLb3OJMTI9bfk,10193
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+ celldetective/gui/tableUI.py,sha256=2tBZN3X1nrBD_t58yaCY4NENWeHtgvaN0IcKzZn18SM,50500
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+ celldetective/gui/thresholds_gui.py,sha256=6Lgr_CK2LBn_gMsWf0gIQvQIQSMg3oIhFfknFeg8Fh4,50721
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+ celldetective/gui/viewers.py,sha256=0KmtAKZUNY5xpKFcFajgc1Jbnf_86rw_ooX6UrMmEHc,46328
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  celldetective/gui/help/DL-segmentation-strategy.json,sha256=59jVtn8pECbCqPQwJifgViVYTF1AxLQDIkNJMS7CJuk,1143
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  celldetective/gui/help/Threshold-vs-DL.json,sha256=SELQk3qF8xcwmkX686Bqrr7i5KiXqN7r4jbUydCLRDU,603
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  celldetective/gui/help/cell-populations.json,sha256=wP0ekhokb9oHE3XqOQrC5ARewNgOlv0GJrQeVQyMJzg,1075
@@ -80,7 +80,7 @@ celldetective/models/tracking_configs/no_z_motion.json,sha256=b4RWOJ0w6Y2e0vJYwK
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  celldetective/models/tracking_configs/ricm.json,sha256=L-vmwCR1f89U-qnH2Ms0cBfPFR_dxIWoe2ccH8V-QBA,2727
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  celldetective/models/tracking_configs/ricm2.json,sha256=DDjJ6ScYcDWvlsy7ujPID8v8H28vcNcMuZmNR8XmGxo,2718
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  celldetective/scripts/analyze_signals.py,sha256=YE05wZujl2hQFWkvqATBcCx-cAd_V3RxnvKoh0SB7To,2194
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- celldetective/scripts/measure_cells.py,sha256=hKBLX6qT1K5asq0e53kLs2_Xr9oPYwliiEaPQgpnNrU,11734
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+ celldetective/scripts/measure_cells.py,sha256=jUwPSjIzR4sCvjer_K5vSlRQX3e8AhJE3xhUbevES7c,12143
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  celldetective/scripts/measure_relative.py,sha256=L_NjIUfHSGupkAKLZkubBHJdZh0ugPhCTJem80b0zMM,4261
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  celldetective/scripts/segment_cells.py,sha256=bnNacgp_6qpb1fvwPizxVctsUNiFBegKalo-PSpXPEU,8262
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  celldetective/scripts/segment_cells_thresholds.py,sha256=6ERg-hxdHMSgXPQSBPtYt2lccTlkz9ZLktYgb57Avmw,5168
@@ -94,14 +94,14 @@ tests/test_io.py,sha256=gk5FmoI7ANEczUtNXYRxc48KzkfYzemwS_eYaLq4_NI,2093
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  tests/test_measure.py,sha256=FEUAs1rVHylvIvubCb0bJDNGZLVmkgXNgI3NaGQ1dA8,4542
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  tests/test_neighborhood.py,sha256=gk5FmoI7ANEczUtNXYRxc48KzkfYzemwS_eYaLq4_NI,2093
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  tests/test_preprocessing.py,sha256=FI-Wk-kc4wWmOQg_NLCUIZC1oti396wr5cC-BauBai0,1436
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- tests/test_qt.py,sha256=eYqOoff-vfvZAZM6H_IY19IqK7qzyETcyj54f9T0bQA,3906
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+ tests/test_qt.py,sha256=Mx8qxUofHyMo2NnPOKQq108sJ-7skVFGWAA_VMyehMw,4042
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  tests/test_segmentation.py,sha256=k1b_zIZdlytEdJcHjAUQEO3gTBAHtv5WvrwQN2xD4kc,3470
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  tests/test_signals.py,sha256=No4cah6KxplhDcKXnU8RrA7eDla4hWw6ccf7xGnBokU,3599
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  tests/test_tracking.py,sha256=8hebWSqEIuttD1ABn-6dKCT7EXKRR7-4RwyFWi1WPFo,8800
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  tests/test_utils.py,sha256=NKRCAC1d89aBK5cWjTb7-pInYow901RrT-uBlIdz4KI,3692
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- celldetective-1.3.3.post1.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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- celldetective-1.3.3.post1.dist-info/METADATA,sha256=vrBTSR4sY56-qMlzOBKejzf-71YICuEA40HDCBZqx9E,10510
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- celldetective-1.3.3.post1.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
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- celldetective-1.3.3.post1.dist-info/entry_points.txt,sha256=2NU6_EOByvPxqBbCvjwxlVlvnQreqZ3BKRCVIKEv3dg,62
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- celldetective-1.3.3.post1.dist-info/top_level.txt,sha256=6rsIKKfGMKgud7HPuATcpq6EhdXwcg_yknBVWn9x4C4,20
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- celldetective-1.3.3.post1.dist-info/RECORD,,
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+ celldetective-1.3.4.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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+ celldetective-1.3.4.dist-info/METADATA,sha256=h45Xti2RUbcEQk5Om87dsNhfDQnRCHPOl_Pw3kFfH48,10528
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+ celldetective-1.3.4.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
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+ celldetective-1.3.4.dist-info/entry_points.txt,sha256=2NU6_EOByvPxqBbCvjwxlVlvnQreqZ3BKRCVIKEv3dg,62
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+ celldetective-1.3.4.dist-info/top_level.txt,sha256=6rsIKKfGMKgud7HPuATcpq6EhdXwcg_yknBVWn9x4C4,20
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+ celldetective-1.3.4.dist-info/RECORD,,
tests/test_qt.py CHANGED
@@ -1,6 +1,7 @@
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  import pytest
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  from PyQt5 import QtCore
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  from celldetective.gui.InitWindow import AppInitWindow
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+ from celldetective.utils import get_software_location
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  import time
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  import os
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@@ -9,7 +10,8 @@ print(abs_path)
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  @pytest.fixture
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  def app(qtbot):
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- test_app = AppInitWindow()
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+ software_location = get_software_location()
14
+ test_app = AppInitWindow(software_location=software_location)
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  qtbot.addWidget(test_app)
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  return test_app
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@@ -33,8 +35,8 @@ def test_app(app, qtbot):
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  qtbot.mouseClick(app.validate_button, QtCore.Qt.LeftButton)
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  # Set a position
36
- app.control_panel.position_list.setCurrentIndex(1)
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- app.control_panel.update_position_options()
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+ #app.control_panel.position_list.setCurrentIndex(0)
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+ #app.control_panel.update_position_options()
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  # View stacl
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  qtbot.mouseClick(app.control_panel.view_stack_btn, QtCore.Qt.LeftButton)