celldetective 1.3.1__py3-none-any.whl → 1.3.3.post1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (34) hide show
  1. celldetective/_version.py +1 -1
  2. celldetective/events.py +2 -0
  3. celldetective/gui/classifier_widget.py +51 -3
  4. celldetective/gui/control_panel.py +9 -3
  5. celldetective/gui/generic_signal_plot.py +161 -2
  6. celldetective/gui/gui_utils.py +90 -1
  7. celldetective/gui/measurement_options.py +35 -32
  8. celldetective/gui/plot_signals_ui.py +8 -3
  9. celldetective/gui/process_block.py +36 -114
  10. celldetective/gui/retrain_segmentation_model_options.py +3 -1
  11. celldetective/gui/signal_annotator.py +53 -26
  12. celldetective/gui/signal_annotator2.py +17 -30
  13. celldetective/gui/survival_ui.py +7 -3
  14. celldetective/gui/tableUI.py +300 -183
  15. celldetective/gui/thresholds_gui.py +195 -199
  16. celldetective/gui/viewers.py +267 -13
  17. celldetective/io.py +110 -10
  18. celldetective/measure.py +128 -88
  19. celldetective/models/segmentation_effectors/ricm_bf_all_last/config_input.json +79 -0
  20. celldetective/models/segmentation_effectors/ricm_bf_all_last/ricm_bf_all_last +0 -0
  21. celldetective/models/segmentation_effectors/ricm_bf_all_last/training_instructions.json +37 -0
  22. celldetective/models/segmentation_effectors/test-transfer/config_input.json +39 -0
  23. celldetective/models/segmentation_effectors/test-transfer/test-transfer +0 -0
  24. celldetective/neighborhood.py +154 -69
  25. celldetective/relative_measurements.py +128 -4
  26. celldetective/scripts/measure_cells.py +3 -3
  27. celldetective/signals.py +207 -213
  28. celldetective/utils.py +16 -0
  29. {celldetective-1.3.1.dist-info → celldetective-1.3.3.post1.dist-info}/METADATA +11 -10
  30. {celldetective-1.3.1.dist-info → celldetective-1.3.3.post1.dist-info}/RECORD +34 -29
  31. {celldetective-1.3.1.dist-info → celldetective-1.3.3.post1.dist-info}/WHEEL +1 -1
  32. {celldetective-1.3.1.dist-info → celldetective-1.3.3.post1.dist-info}/LICENSE +0 -0
  33. {celldetective-1.3.1.dist-info → celldetective-1.3.3.post1.dist-info}/entry_points.txt +0 -0
  34. {celldetective-1.3.1.dist-info → celldetective-1.3.3.post1.dist-info}/top_level.txt +0 -0
@@ -1,18 +1,18 @@
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  celldetective/__init__.py,sha256=bi3SGTMo6s2qQBsJAaKy-a4xaGcTQVW8zsqaiX5XKeY,139
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  celldetective/__main__.py,sha256=_H9B620ntENFx9RBvlV6ybxpvtHzCbv5NnIPmDBr9Z0,1127
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- celldetective/_version.py,sha256=-ypEJktJToAL9by62JJKWEzDo_KPCQtmE5kwFgX24z4,22
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- celldetective/events.py,sha256=YI31GRGQhKlNHY5lljme2j2uhnSSmq2Y07Kzm6zReTI,7967
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+ celldetective/_version.py,sha256=mDV9xbwx4cdW0zTkJ0d0anqj6e9ntj3IW5BlFM6Gw6A,28
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+ celldetective/events.py,sha256=R6GDtiH0ZuEbad0R-nrlTHmho0Hly3QyyVYx2dD__P0,8051
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  celldetective/extra_properties.py,sha256=88JtyoY883ibon-rqtCX_BCHOpo0MTGfiLciIR7jM24,5176
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  celldetective/filters.py,sha256=b0qKwHor1fvNA_dHovP17nQz8EsW5YlyhT2TJnayn08,3615
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- celldetective/io.py,sha256=erGKB0ALcLe5ffuo7pkuACDBC2DR-ZBmJHUcKfCLkrM,86442
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- celldetective/measure.py,sha256=S2aEhAAdwNk2p2d8rGG78MoN1g19zTUxYQhCQ-febQI,56328
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- celldetective/neighborhood.py,sha256=GjF_fTmtcU8jq5XZT-DnDSp28VDTrsaHjIGJG7W2Ppk,52799
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+ celldetective/io.py,sha256=zSiXczHEa_RwfXu5joHT8zThZ0V7bCkYPutHgZGdBzs,90030
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+ celldetective/measure.py,sha256=b0ZiTm_lrM1geInh8F1co9ef2w1oXQuLx7ACTo6vFIU,57358
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+ celldetective/neighborhood.py,sha256=66fsOPDtjbrUTww97wVFmPk-UZakJgglua8O1Jl-RC4,56745
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  celldetective/preprocessing.py,sha256=WmetQCgmHK6fo8AuwESPLab05WgeIy8ElBs-9KM-Cco,44081
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- celldetective/relative_measurements.py,sha256=qPHC6gtUaICNGKh6Qfh8y6NA4OUJauGcaj9_TUbrswg,24998
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+ celldetective/relative_measurements.py,sha256=av5DiGlGsbILPav8aVcFlhbmbPLPZPxCB5qQejzhiRY,30400
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  celldetective/segmentation.py,sha256=NjAVaVpZufpJ-LIvBx5UFH6j5kjRKE6EVLjttDrqaqs,30826
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- celldetective/signals.py,sha256=8D6n_NdVqP9Jdj6O3rcFUwombcRs0RvxrFYuRaGDASU,120626
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+ celldetective/signals.py,sha256=XGBTyAPVp7hhXDK1qRFrC4H2U65jj2nBR4FQJ4LvUvA,121028
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  celldetective/tracking.py,sha256=zZ9J1plUCTjKuK4HAPiuj3BysoR6hLehqYVsBEqhCnk,37995
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- celldetective/utils.py,sha256=siulFFTVD-KxPQJEL-lwuUqlKjCi6PbtxXO3v2wJYAs,88774
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+ celldetective/utils.py,sha256=oP_GHPdJJHK9s8sIlzKEXfTjCvzxAifdYYynkSMfu7A,89145
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  celldetective/datasets/segmentation_annotations/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  celldetective/datasets/signal_annotations/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  celldetective/gui/InitWindow.py,sha256=OyEyWF6KJ4YzGK-8ZeMwYmPEG1maHcHlxmdsCJyUiEs,14963
@@ -20,29 +20,29 @@ celldetective/gui/__init__.py,sha256=2_r2xfOj4_2xj0yBkCTIfzlF94AHKm-j6Pvpd7DddQc
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  celldetective/gui/about.py,sha256=FJZrj6C-p6uqp_3UaprKosuW-Sw9_HPNQAvFbis9Gdk,1749
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  celldetective/gui/analyze_block.py,sha256=sat8RECEeZxlaconZZIxI0IrIjwJo121PcBXqJmA1-o,24756
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  celldetective/gui/btrack_options.py,sha256=OrvbG5coZhLRk5jtXiLFJu34z1hWHN9kHkBiZ7XMZoI,39269
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- celldetective/gui/classifier_widget.py,sha256=2dTOyJYIG6KXr0zHDSPMaJIX0BtGnAiy63jwQVE0fqw,16826
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+ celldetective/gui/classifier_widget.py,sha256=4239jKQb1uZMQU6iBBicavE05QAgmBQBM0YnmDesoPs,18430
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  celldetective/gui/configure_new_exp.py,sha256=Eyr-M4FH-4xrUJbIGNdKXAtXb_ULr8lCol26JSzXEww,20125
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- celldetective/gui/control_panel.py,sha256=JbS47IFeVHc1D2olWiUB_Lo9Bn20QJCPVwhXnRdlFec,18990
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- celldetective/gui/generic_signal_plot.py,sha256=OzlFr2RxspkyxW1YIhl_c3q63RXAngMPouYPhEtk0S0,29509
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- celldetective/gui/gui_utils.py,sha256=afqJTeVyMa49QEbSmT0hAiXGd7EiKzckOD5tMvUr-aY,27901
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+ celldetective/gui/control_panel.py,sha256=5bU9n1bMiLrtrT9YH8-UfV5dJoOOtZejFcbHFkgX5NY,19185
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+ celldetective/gui/generic_signal_plot.py,sha256=KPJU5uP7uHxWQ6txmZx6gFalGPGxC165LSsx7AvB7zA,35605
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+ celldetective/gui/gui_utils.py,sha256=og9iz2DkkJc_4UZmnvhN2oCMMPbJVnx-FAF10JfR8Eo,30441
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  celldetective/gui/json_readers.py,sha256=Su3angSobroeGrrumGgQcs3Cr_9l9p52-Hfm3qneVcI,3664
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  celldetective/gui/layouts.py,sha256=f_MoRPtl6e1UAsSTVidCSNk4_hoz1me_Z1KFaia29TQ,51783
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- celldetective/gui/measurement_options.py,sha256=jc0_RGpbCB3BhDWjqKFBP4j5ncTSIKUz8In7ae306vE,39288
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+ celldetective/gui/measurement_options.py,sha256=4jnTv3dOeazEzWdsKgAmJaHp_dhalr6pDg8MxE3L_L4,39699
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  celldetective/gui/neighborhood_options.py,sha256=BvWwsIX1KWogUgHWRZptqY3ZRmH1aj7r8tiLmbRFhW4,19783
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  celldetective/gui/plot_measurements.py,sha256=SBFkY3542hW4H_vllOCMxMOgBz09KUE2FLhhgI8avXk,51024
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- celldetective/gui/plot_signals_ui.py,sha256=dQINAOyOmAOHMfmjfCsx1hJ7HGeCgNCq8kESuADbQqo,15864
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- celldetective/gui/process_block.py,sha256=S6oYEoq1S8NejwzHDt6oKlheG3fGzRIjgkcKGeRKJnc,73700
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- celldetective/gui/retrain_segmentation_model_options.py,sha256=jYD9AWzDPacUgaBv9l6ldQxXNZb3BD4EwJc-0t02jXw,23207
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+ celldetective/gui/plot_signals_ui.py,sha256=i3ulnd6_dyFDRRy8RLO-fC6zwkbYjMXLYRc8rTYKTlE,15981
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+ celldetective/gui/process_block.py,sha256=0wD9ffvZwZgnZ79R2BV_It7lbdk8bvOJs658uDfAsBo,69494
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+ celldetective/gui/retrain_segmentation_model_options.py,sha256=ACeQ_DdSLy1EK0z_S_9v-0HOiLXjUmrz4sdvHWZT6FI,23330
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  celldetective/gui/retrain_signal_model_options.py,sha256=XigNdGlNu3KWB_MYBcKQhfXjcWwVZNMmu0qmxNoo14E,21919
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  celldetective/gui/seg_model_loader.py,sha256=vWvPMU6nkTiQfI-x2WjQHrdJGFdV4a4Ne-4YIOq_YZ8,18153
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- celldetective/gui/signal_annotator.py,sha256=z205XhTZjKPo9L4lzt-g-uLiu9vk6V1w5zUlxu3bWqQ,87379
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- celldetective/gui/signal_annotator2.py,sha256=Y43JSCg3bO_QL7zsqdeQ-FY8TNq_5WiV1cHO-knK0QE,109375
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+ celldetective/gui/signal_annotator.py,sha256=uzX06JYJOCFm4EytQRV2_JR8orbjDh6NjWberQePiGg,88244
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+ celldetective/gui/signal_annotator2.py,sha256=Phft2_mjwtadd_BFNnZwofOGtrzXL9AEBG46hHvlZow,108888
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  celldetective/gui/signal_annotator_options.py,sha256=ztFFgA70SJ0QkntxYGsgDNCvSuSR5GjF7_J6pYVYc1g,11020
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  celldetective/gui/styles.py,sha256=fup0_U1Zk0IJAjyruHde_r-X7d7cTMcrpPLPl-HuKAM,4820
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- celldetective/gui/survival_ui.py,sha256=poPKBn8XpkYw3OkCEHjtJ5MvCRz0D2vhQcTYi1zWFEo,10171
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- celldetective/gui/tableUI.py,sha256=sHmXjRhMYjYY4qCrUyMKZf4O-PorvJuMzHbVwshSNVs,46167
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- celldetective/gui/thresholds_gui.py,sha256=t1hTDdaJTJWHBt9vtRCE4B1TsVHhobQwCpKfntVgaQI,50510
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- celldetective/gui/viewers.py,sha256=rQWJoE45uncNl8-_ktNPnzxvx_Rm8MN3LIawZtWfusU,37723
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+ celldetective/gui/survival_ui.py,sha256=SJV-HIcA0hg_ZvyTdxbutvkUwuCSnx2TI3hNHn3AtZE,10362
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+ celldetective/gui/tableUI.py,sha256=kkgqxopWuC8nnTFPVkf09_h9176OfBmRMZ3E6AsyQIc,50531
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+ celldetective/gui/thresholds_gui.py,sha256=YHtgTDVNM0H-4bKwrRVs5yFAX4wgp5DSfjjfm0RGUKA,50849
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+ celldetective/gui/viewers.py,sha256=WdNb9J7hNtTvl5wpdmJbWeXWeE0hz06B0wOAOMt1_10,46466
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  celldetective/gui/help/DL-segmentation-strategy.json,sha256=59jVtn8pECbCqPQwJifgViVYTF1AxLQDIkNJMS7CJuk,1143
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  celldetective/gui/help/Threshold-vs-DL.json,sha256=SELQk3qF8xcwmkX686Bqrr7i5KiXqN7r4jbUydCLRDU,603
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  celldetective/gui/help/cell-populations.json,sha256=wP0ekhokb9oHE3XqOQrC5ARewNgOlv0GJrQeVQyMJzg,1075
@@ -66,6 +66,11 @@ celldetective/icons/vignette_signals2.svg,sha256=muGNcQudV1jG-bmFd9FwV-Wb8PcrRV5
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  celldetective/links/zenodo.json,sha256=puCKI6vQi_L_7H70Nii_UzIqRcYVWUQGRKpTulyoHPo,30549
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  celldetective/models/pair_signal_detection/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  celldetective/models/segmentation_effectors/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ celldetective/models/segmentation_effectors/ricm_bf_all_last/config_input.json,sha256=Sr5AiyJkg_EoAUFSZbUH_FE-jQHTwNR3tiUZdmvPlaA,7068
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+ celldetective/models/segmentation_effectors/ricm_bf_all_last/ricm_bf_all_last,sha256=HTgeUImhkhjf-HsoziJPL16azPIGt2XiMmgvB_qf7DA,26559970
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+ celldetective/models/segmentation_effectors/ricm_bf_all_last/training_instructions.json,sha256=4ZcZVti1kA_1zV8_3jj2pZYBST0kX8Z00tlc4AATlxo,847
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+ celldetective/models/segmentation_effectors/test-transfer/config_input.json,sha256=JytjANaerSQBjMn-cZktHj8ESdMCIvXWdmwmgQGgUYE,1212
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+ celldetective/models/segmentation_effectors/test-transfer/test-transfer,sha256=eEy7bx3jJcj0MmV893OMbzSF_jagCz4Ov7CGkXGWmqI,26554673
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@@ -75,7 +80,7 @@ celldetective/models/tracking_configs/no_z_motion.json,sha256=b4RWOJ0w6Y2e0vJYwK
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  celldetective/models/tracking_configs/ricm.json,sha256=L-vmwCR1f89U-qnH2Ms0cBfPFR_dxIWoe2ccH8V-QBA,2727
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  celldetective/models/tracking_configs/ricm2.json,sha256=DDjJ6ScYcDWvlsy7ujPID8v8H28vcNcMuZmNR8XmGxo,2718
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  celldetective/scripts/analyze_signals.py,sha256=YE05wZujl2hQFWkvqATBcCx-cAd_V3RxnvKoh0SB7To,2194
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- celldetective/scripts/measure_cells.py,sha256=L9TRc8B1_Y1jco29fWm4MVNicTFQNVeA_4Vbu3o_H1o,11735
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+ celldetective/scripts/measure_cells.py,sha256=hKBLX6qT1K5asq0e53kLs2_Xr9oPYwliiEaPQgpnNrU,11734
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@@ -94,9 +99,9 @@ tests/test_segmentation.py,sha256=k1b_zIZdlytEdJcHjAUQEO3gTBAHtv5WvrwQN2xD4kc,34
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- celldetective-1.3.1.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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- celldetective-1.3.1.dist-info/METADATA,sha256=OxGpdo-I-QqAkc69wATNBWIQ6YtEGgWaCsKemDri8Pc,9969
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- celldetective-1.3.1.dist-info/WHEEL,sha256=P9jw-gEje8ByB7_hXoICnHtVCrEwMQh-630tKvQWehc,91
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- celldetective-1.3.1.dist-info/entry_points.txt,sha256=2NU6_EOByvPxqBbCvjwxlVlvnQreqZ3BKRCVIKEv3dg,62
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- celldetective-1.3.1.dist-info/top_level.txt,sha256=6rsIKKfGMKgud7HPuATcpq6EhdXwcg_yknBVWn9x4C4,20
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- celldetective-1.3.1.dist-info/RECORD,,
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+ celldetective-1.3.3.post1.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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+ celldetective-1.3.3.post1.dist-info/METADATA,sha256=vrBTSR4sY56-qMlzOBKejzf-71YICuEA40HDCBZqx9E,10510
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+ celldetective-1.3.3.post1.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
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+ celldetective-1.3.3.post1.dist-info/entry_points.txt,sha256=2NU6_EOByvPxqBbCvjwxlVlvnQreqZ3BKRCVIKEv3dg,62
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+ celldetective-1.3.3.post1.dist-info/top_level.txt,sha256=6rsIKKfGMKgud7HPuATcpq6EhdXwcg_yknBVWn9x4C4,20
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+ celldetective-1.3.3.post1.dist-info/RECORD,,
@@ -1,5 +1,5 @@
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  Wheel-Version: 1.0
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- Generator: setuptools (75.3.0)
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+ Generator: setuptools (75.6.0)
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