celldetective 1.2.2__py3-none-any.whl → 1.2.2.post1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (12) hide show
  1. {celldetective-1.2.2.dist-info → celldetective-1.2.2.post1.dist-info}/METADATA +1 -1
  2. {celldetective-1.2.2.dist-info → celldetective-1.2.2.post1.dist-info}/RECORD +6 -12
  3. celldetective/models/segmentation_effectors/primNK_cfse/config_input.json +0 -29
  4. celldetective/models/segmentation_effectors/primNK_cfse/cp-cfse-transfer +0 -0
  5. celldetective/models/segmentation_effectors/primNK_cfse/training_instructions.json +0 -37
  6. celldetective/models/segmentation_effectors/ricm-bimodal/config_input.json +0 -130
  7. celldetective/models/segmentation_effectors/ricm-bimodal/ricm-bimodal +0 -0
  8. celldetective/models/segmentation_effectors/ricm-bimodal/training_instructions.json +0 -37
  9. {celldetective-1.2.2.dist-info → celldetective-1.2.2.post1.dist-info}/LICENSE +0 -0
  10. {celldetective-1.2.2.dist-info → celldetective-1.2.2.post1.dist-info}/WHEEL +0 -0
  11. {celldetective-1.2.2.dist-info → celldetective-1.2.2.post1.dist-info}/entry_points.txt +0 -0
  12. {celldetective-1.2.2.dist-info → celldetective-1.2.2.post1.dist-info}/top_level.txt +0 -0
{celldetective-1.2.2.dist-info → celldetective-1.2.2.post1.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: celldetective
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- Version: 1.2.2
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+ Version: 1.2.2.post1
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  Summary: description
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  Home-page: http://github.com/remyeltorro/celldetective
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  Author: Rémy Torro
{celldetective-1.2.2.dist-info → celldetective-1.2.2.post1.dist-info}/RECORD RENAMED
@@ -53,12 +53,6 @@ celldetective/icons/vignette_signals2.svg,sha256=muGNcQudV1jG-bmFd9FwV-Wb8PcrRV5
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  celldetective/links/zenodo.json,sha256=7WKRuZY7MHTR-IChWBbU0i47H_479NtlxsCGaJn9-xM,22728
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  celldetective/models/pair_signal_detection/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  celldetective/models/segmentation_effectors/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- celldetective/models/segmentation_effectors/primNK_cfse/config_input.json,sha256=gwEGP5wc6iVcwLrR5IbEb-9lTbdQuPyLLFYXh00374U,509
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- celldetective/models/segmentation_effectors/primNK_cfse/cp-cfse-transfer,sha256=ps4BAzGxr2i2R0uBGJqfF9wjg5bIeSeBGQb0YcUChhY,26559970
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- celldetective/models/segmentation_effectors/primNK_cfse/training_instructions.json,sha256=DqEO4_oQuQmJkZiefREXz8ts60svoqxIQB-LMScuCnc,909
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- celldetective/models/segmentation_effectors/ricm-bimodal/config_input.json,sha256=4KUHF-DAHcJgJf9wiGEd880qxRMRKCkiFjDi0PE7Dvg,10579
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- celldetective/models/segmentation_effectors/ricm-bimodal/ricm-bimodal,sha256=xmTtQVIlrqLMitjS8WKhnVxcUFuJDbvmn0TghUMM6pE,26559153
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- celldetective/models/segmentation_effectors/ricm-bimodal/training_instructions.json,sha256=yIz0oMDX2lTCjwMO0PlRp_7B_RD9O9aMQizd-6SAQEc,831
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  celldetective/models/segmentation_generic/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  celldetective/models/segmentation_targets/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  celldetective/models/signal_detection/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -84,9 +78,9 @@ tests/test_segmentation.py,sha256=_HB8CCq-Ci6amf0xAmDIUuwtBUU_EGpgqLvcvSHrGug,34
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  tests/test_signals.py,sha256=No4cah6KxplhDcKXnU8RrA7eDla4hWw6ccf7xGnBokU,3599
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  tests/test_tracking.py,sha256=8hebWSqEIuttD1ABn-6dKCT7EXKRR7-4RwyFWi1WPFo,8800
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  tests/test_utils.py,sha256=NKRCAC1d89aBK5cWjTb7-pInYow901RrT-uBlIdz4KI,3692
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- celldetective-1.2.2.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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- celldetective-1.2.2.dist-info/METADATA,sha256=yBHxQ0wF0j9HE_EVb39sby8wF4-AflSJ79UzC8TIYtE,12833
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- celldetective-1.2.2.dist-info/WHEEL,sha256=GV9aMThwP_4oNCtvEC2ec3qUYutgWeAzklro_0m4WJQ,91
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- celldetective-1.2.2.dist-info/entry_points.txt,sha256=2NU6_EOByvPxqBbCvjwxlVlvnQreqZ3BKRCVIKEv3dg,62
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- celldetective-1.2.2.dist-info/top_level.txt,sha256=6rsIKKfGMKgud7HPuATcpq6EhdXwcg_yknBVWn9x4C4,20
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- celldetective-1.2.2.dist-info/RECORD,,
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+ celldetective-1.2.2.post1.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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+ celldetective-1.2.2.post1.dist-info/METADATA,sha256=TUIJ7f5xLHoW8DMdQYzA3TQjU6fIm83Xo8DHV-99-QA,12839
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+ celldetective-1.2.2.post1.dist-info/WHEEL,sha256=GV9aMThwP_4oNCtvEC2ec3qUYutgWeAzklro_0m4WJQ,91
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+ celldetective-1.2.2.post1.dist-info/entry_points.txt,sha256=2NU6_EOByvPxqBbCvjwxlVlvnQreqZ3BKRCVIKEv3dg,62
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+ celldetective-1.2.2.post1.dist-info/top_level.txt,sha256=6rsIKKfGMKgud7HPuATcpq6EhdXwcg_yknBVWn9x4C4,20
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+ celldetective-1.2.2.post1.dist-info/RECORD,,
celldetective/models/segmentation_effectors/primNK_cfse/config_input.json DELETED
@@ -1,29 +0,0 @@
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- {
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- "channels": [
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- "effector_fluo_channel",
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- "None"
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- ],
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- "diameter": 30.0,
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- "cellprob_threshold": 0.0,
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- "flow_threshold": 0.4,
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- "normalization_percentile": [
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- "normalization_clip": [
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- "normalization_values": [
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- [
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- [
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- 1.0,
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- 99.0
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- ],
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- "model_type": "cellpose",
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- "spatial_calibration": 0.21783999999999998
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- }
celldetective/models/segmentation_effectors/primNK_cfse/training_instructions.json DELETED
@@ -1,37 +0,0 @@
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- {
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- "model_name": "cp-cfse-transfer",
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- "model_type": "cellpose",
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- "pretrained": "/home/limozin/Documents/GitHub/celldetective/celldetective/models/segmentation_generic/CP_cyto2",
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- "spatial_calibration": 0.21783999999999998,
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- "channel_option": [
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- "effector_fluo_channel",
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- "None"
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- "normalization_percentile": [
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- "normalization_clip": [
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- "normalization_values": [
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- [
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- 99.0
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- [
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- ],
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- "ds": [
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- "/home/limozin/Desktop/primNK_w_MCF7/dataset"
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- ],
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- "augmentation_factor": 1.5,
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- "validation_split": 0.2,
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- "learning_rate": 0.001,
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- "batch_size": 8,
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- "epochs": 3000,
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- "target_directory": "/home/limozin/Documents/GitHub/celldetective/celldetective/models/segmentation_effectors"
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- }
celldetective/models/segmentation_effectors/ricm-bimodal/config_input.json DELETED
@@ -1,130 +0,0 @@
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- {
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- "channels": [
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- "adhesion_channel",
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- "flow_threshold": 0.4,
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- "normalization_clip": [
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- "normalization_values": [
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- [
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- [
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- ],
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- "model_type": "cellpose",
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- "spatial_calibration": 0.2,
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- "dataset": {
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- "train": [
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