celldetective 1.2.1__py3-none-any.whl → 1.2.2.post1__py3-none-any.whl

celldetective/models/segmentation_effectors/ricm-bimodal/config_input.json

@@ -1,130 +0,0 @@
-{
-    "channels": [
-        "adhesion_channel",
-        "brightfield_channel"
-    ],
-    "diameter": 30.0,
-    "cellprob_threshold": 0.0,
-    "flow_threshold": 0.4,
-    "normalization_percentile": [
-        false,
-        true
-    ],
-    "normalization_clip": [
-        true,
-        true
-    ],
-    "normalization_values": [
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-            1.25
-        ],
-        [
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-            99.0
-        ]
-    ],
-    "model_type": "cellpose",
-    "spatial_calibration": 0.2,
-    "dataset": {
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-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/AdhesionDalia-26-08_209_0022.tif",
-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/AdhesionDalia-26-08_2015_0039.tif",
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-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/Dalia-2021-04-27_C7b21NF-incub-with-cells-test_605_0037.tif",
-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/Dalia08052020_102_0039.tif",
-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/Dalia01092020_200_0034.tif",
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-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/Dominique20191016_303_0016.tif",
-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/Marie_502_0000.tif",
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-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/20231213_RICM_2C11_PP2_normed_106_0000.tif",
-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/Dalia01092020_2014_0038.tif",
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-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/Dalia01092020_2014_0034.tif",
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-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/Exp20190619_700_0023.tif",
-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/Marie_600_0019.tif",
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-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/Marie_200_0006.tif",
-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/Dalia01092020_206_0030.tif"
-        ],
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-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/Marie_502_0150.tif",
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-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/Dalia08052020_1015_0036.tif",
-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/StaticRICM-Dom-20191016-Her2-10nM-C7b21_200_0061.tif",
-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/Dalia01092020_5013_0000.tif",
-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/Exp20190619_700_0025.tif",
-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/Dalia08052020_105_0039.tif",
-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/Marie_801_0177.tif",
-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/Dalia01092020_504_0016.tif",
-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/Dominique20191016_301_0039.tif",
-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/Dalia01092020_504_0037.tif",
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-            "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined/20231213_RICM_2C11_PP2_normed_300_0087.tif"
-        ]
-    }
-}

celldetective/models/segmentation_effectors/ricm-bimodal/training_instructions.json

@@ -1,37 +0,0 @@
-{
-    "model_name": "ricm-bimodal",
-    "model_type": "cellpose",
-    "pretrained": null,
-    "spatial_calibration": 0.2,
-    "channel_option": [
-        "adhesion_channel",
-        "brightfield_channel"
-    ],
-    "normalization_percentile": [
-        false,
-        true
-    ],
-    "normalization_clip": [
-        true,
-        true
-    ],
-    "normalization_values": [
-        [
-            0.75,
-            1.25
-        ],
-        [
-            1.0,
-            99.0
-        ]
-    ],
-    "ds": [
-        "/home/kheya/Documents/torro-cinam/DATASET-RICM/combined"
-    ],
-    "augmentation_factor": 3.0,
-    "validation_split": 0.2,
-    "learning_rate": 0.008,
-    "batch_size": 16,
-    "epochs": 3000,
-    "target_directory": "/home/kheya/Documents/torro-cinam/GitHub/celldetective/celldetective/models/segmentation_effectors"
-}

celldetective-1.2.1.dist-info/RECORD

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