celldetective 1.1.1.post4__py3-none-any.whl → 1.2.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (38) hide show
  1. celldetective/__init__.py +2 -1
  2. celldetective/extra_properties.py +62 -34
  3. celldetective/gui/__init__.py +1 -0
  4. celldetective/gui/analyze_block.py +2 -1
  5. celldetective/gui/classifier_widget.py +8 -7
  6. celldetective/gui/control_panel.py +50 -6
  7. celldetective/gui/layouts.py +5 -4
  8. celldetective/gui/neighborhood_options.py +10 -8
  9. celldetective/gui/plot_signals_ui.py +39 -11
  10. celldetective/gui/process_block.py +413 -95
  11. celldetective/gui/retrain_segmentation_model_options.py +17 -4
  12. celldetective/gui/retrain_signal_model_options.py +106 -6
  13. celldetective/gui/signal_annotator.py +25 -5
  14. celldetective/gui/signal_annotator2.py +2708 -0
  15. celldetective/gui/signal_annotator_options.py +3 -1
  16. celldetective/gui/survival_ui.py +15 -6
  17. celldetective/gui/tableUI.py +235 -39
  18. celldetective/io.py +537 -421
  19. celldetective/measure.py +919 -969
  20. celldetective/models/pair_signal_detection/blank +0 -0
  21. celldetective/neighborhood.py +426 -354
  22. celldetective/relative_measurements.py +648 -0
  23. celldetective/scripts/analyze_signals.py +1 -1
  24. celldetective/scripts/measure_cells.py +28 -8
  25. celldetective/scripts/measure_relative.py +103 -0
  26. celldetective/scripts/segment_cells.py +5 -5
  27. celldetective/scripts/track_cells.py +4 -1
  28. celldetective/scripts/train_segmentation_model.py +23 -18
  29. celldetective/scripts/train_signal_model.py +33 -0
  30. celldetective/signals.py +402 -8
  31. celldetective/tracking.py +8 -2
  32. celldetective/utils.py +93 -0
  33. {celldetective-1.1.1.post4.dist-info → celldetective-1.2.0.dist-info}/METADATA +8 -8
  34. {celldetective-1.1.1.post4.dist-info → celldetective-1.2.0.dist-info}/RECORD +38 -34
  35. {celldetective-1.1.1.post4.dist-info → celldetective-1.2.0.dist-info}/WHEEL +1 -1
  36. {celldetective-1.1.1.post4.dist-info → celldetective-1.2.0.dist-info}/LICENSE +0 -0
  37. {celldetective-1.1.1.post4.dist-info → celldetective-1.2.0.dist-info}/entry_points.txt +0 -0
  38. {celldetective-1.1.1.post4.dist-info → celldetective-1.2.0.dist-info}/top_level.txt +0 -0
@@ -1,41 +1,43 @@
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- celldetective/__init__.py,sha256=FEZpJKcskBH2IginYzeqPWoR1lVGuyYCXhv7Hnlkoo8,49
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+ celldetective/__init__.py,sha256=PH25g2_AZt7N5Jg1KB3YT9wFvfMr9lIb2WxYzmDqlX4,105
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  celldetective/__main__.py,sha256=TQzL_FLAeEF1YIyRZXMiai40xXy21roPPV23ig4jwG0,14494
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  celldetective/events.py,sha256=s2pWnR3Z1fcB15sET5WsF2Pi6v6qv16hks_m3WiklNs,3658
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- celldetective/extra_properties.py,sha256=ZdWV046RR8jrQPYxLSVVb1cXkWYxfrrLj2tXfc358cU,4179
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+ celldetective/extra_properties.py,sha256=8DkxTvVs7gASsnnGurVZ3_zt6uR0pvvJhBKO2LC6hGk,5118
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  celldetective/filters.py,sha256=b0qKwHor1fvNA_dHovP17nQz8EsW5YlyhT2TJnayn08,3615
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- celldetective/io.py,sha256=_ivq2zE5ffHadZ-YOWSSX5J1GTlEohg6WPvC3xEBZvQ,82819
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- celldetective/measure.py,sha256=HDQZfSRx3daOCV5Snu1paYU5JYkwu8engO2qZqhTAUo,48089
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- celldetective/neighborhood.py,sha256=Jl9VujKYZ9R2pcqmPt5HyeCy5LieNal-oCsD8b7uIWQ,51182
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+ celldetective/io.py,sha256=Y6YJQr4rmQYH3wrBGD9IfHJKqH_AbsJ8Qg99b9c2KuY,86058
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+ celldetective/measure.py,sha256=kTKoGeCEYvACOf-pg11NPfyByogBMIC91lIZA-qZk1E,41344
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+ celldetective/neighborhood.py,sha256=2SV0upNfaScp1Gg9JBiDho3AozyTtC0_SXPyHmnm6Ok,52994
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  celldetective/preprocessing.py,sha256=TKOJTc5o4rSgXqtYeZz-0ox062dD494VMiie3L-9aV4,38305
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+ celldetective/relative_measurements.py,sha256=WRTUewDZ7JKSjPZUZVQ5hUusevAYsFGHjkzCZ3yKHzg,25056
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  celldetective/segmentation.py,sha256=L2VJKmOewC1CNZPiWCO6yUfxt78u9k1NHPr2qTyTaBM,30458
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- celldetective/signals.py,sha256=P7eiDZGGIAYCFBKjGCBi8gMBvJYywxlxZNzyGgw-26Y,102783
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- celldetective/tracking.py,sha256=A0mhdF4uq4m8OX1-rhtuhG69rlh_6Pb34Aebu7hIeKM,37601
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- celldetective/utils.py,sha256=ahHZkLr6ceUDY5sN6uOcGzqKaLjpOIdB_kjhXj_gggA,79003
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+ celldetective/signals.py,sha256=tnqEBb0LkdUHqKQwnNBct7J5zQ_UWR8tVP70UFh22PQ,120176
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+ celldetective/tracking.py,sha256=k5CtlLqH8WjTwAu7ELwBd9VUuiVPjaNxL5h07KKgjEQ,37860
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+ celldetective/utils.py,sha256=C-hZnd09qvvdoTAwj-sw4e6Gq25QyY1mBR6Ydchwdv8,82442
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  celldetective/datasets/segmentation_annotations/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  celldetective/datasets/signal_annotations/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- celldetective/gui/__init__.py,sha256=y2dvrUdJi17QMgPjl8WN3XFHYzJpu2ul4_8y7MQV1Bk,941
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+ celldetective/gui/__init__.py,sha256=2_r2xfOj4_2xj0yBkCTIfzlF94AHKm-j6Pvpd7DddQc,989
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  celldetective/gui/about.py,sha256=i-y54Opb10pKTVNUEcJC-D6Cbiqud2EJ3ZLayXqhdqc,1715
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- celldetective/gui/analyze_block.py,sha256=WD3JQQylx_dVozFCvNqrOyR6LcNHV7R1_gGh7XqOVeI,25423
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+ celldetective/gui/analyze_block.py,sha256=vF3ORldZBZHnXUHCj4PeI6KXJ3skY0qV28LxuazGdmk,25429
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  celldetective/gui/btrack_options.py,sha256=eQEf63yTUsPCN-d1LqgAMmUQpfv2FH85FqnOSaR-9Q8,35575
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- celldetective/gui/classifier_widget.py,sha256=PNg72YlFvKjGdlARaquvY4ALpNV7KZps9LJqAemSUqc,17225
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+ celldetective/gui/classifier_widget.py,sha256=cDMdg8XjT_YG08hmXqqJk2X_yLArkupBMvxkhEya1d8,17271
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  celldetective/gui/configure_new_exp.py,sha256=ANJ-Zn4sjBphtj_aoJu6m1PFEKyv9gxeh9XqS6xOGjk,18969
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- celldetective/gui/control_panel.py,sha256=srpQMxMA8ZOuxqfzRgFZl0OtV1H9bgf2nt20A7vtFps,18101
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+ celldetective/gui/control_panel.py,sha256=LNWixLPyR3wHb-fq-RWdRir-E1R3eLkxi3uBTDsm0WM,19845
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  celldetective/gui/gui_utils.py,sha256=PidFfdc8XASeIzZO5pfKgwqe4vROG7-KpYMcBZ42jdw,22673
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  celldetective/gui/json_readers.py,sha256=fTrNrlxv9NCae8ZJexBEHxI3yCLRqt6F0Yo1OeDycfA,3686
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- celldetective/gui/layouts.py,sha256=MCmGOjZFoL2a24Gu6WH9UgOnI6ZbGNqWxEEf1QMVqqQ,37678
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+ celldetective/gui/layouts.py,sha256=Qrs_5ugNaLWy6l72zzPegrV8idfNWEnNNA2ltH1DC_M,37768
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  celldetective/gui/measurement_options.py,sha256=i0CdAfupHJAqhOT7RsufEK919sAzQnFBkQO4IAMYZL0,47704
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- celldetective/gui/neighborhood_options.py,sha256=sASKSSRl4Fwu0NwLaH-xX0SCvGRiyRA5JuNA288lP8o,20436
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+ celldetective/gui/neighborhood_options.py,sha256=GCAAtBJb2aFQVcJUYGZAl-M6uY0UFt6IjbbIU5cwg04,20462
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  celldetective/gui/plot_measurements.py,sha256=xUoGxV6uXcen-t4yWtAmcGTUayICI-FxTVKPrWMNlfg,51799
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- celldetective/gui/plot_signals_ui.py,sha256=TwWU2u3_mkRNsM8er0kI_kwr5EoZ29YEzlr0cQzyW4A,43732
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- celldetective/gui/process_block.py,sha256=7n9glZ1ojEi1bObqwIj4giNhrteT69X1EPMQ1hK63aU,53565
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- celldetective/gui/retrain_segmentation_model_options.py,sha256=VixtKZTjoJFJy8X6aDbAf0zgK46aXj3I6oPP_92yqhA,22457
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- celldetective/gui/retrain_signal_model_options.py,sha256=gdK1ITuaTPNvnQWXYuUBcP_pH5cvaEEns5XejjTi_Eo,17854
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+ celldetective/gui/plot_signals_ui.py,sha256=96iMud47aDGErVht_kQdUS9f0uQAIYeAg3OaGk4XBVw,44551
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+ celldetective/gui/process_block.py,sha256=oT0bmZqqOjSZvdthqBKoy9MejButRrqdmZQRnUWfJy8,67366
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+ celldetective/gui/retrain_segmentation_model_options.py,sha256=8mZpW5fb5ts6HjKPzRpG0_tIOQgtsQth_h7ruLdKVss,22954
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+ celldetective/gui/retrain_signal_model_options.py,sha256=6OqiulBk4Rn709jyENl5rHKpOHJoUsEzslxSxhRugHw,22478
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  celldetective/gui/seg_model_loader.py,sha256=uKp8oab-4QdTGqb-tb6bOD-FLD_154GOvgWFYz97BwY,17350
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- celldetective/gui/signal_annotator.py,sha256=yHsVCu6Nm8_7bxXfvBfx-xymH9bXBpnQ4TUih1d66cM,86791
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- celldetective/gui/signal_annotator_options.py,sha256=-Q7f8eCwniqbgLJqMCa91Wc-V3VHAZidwt7LPd4Z5yU,10879
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+ celldetective/gui/signal_annotator.py,sha256=CjVqWq6WTKdMkeVT4s5yRu1Vh9QgONxxbXSVbs8_XIk,87534
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+ celldetective/gui/signal_annotator2.py,sha256=-LW6rgmzYcnNvfz1MGBGOJb-aPpnI8tf9JDL5BFb52E,109578
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+ celldetective/gui/signal_annotator_options.py,sha256=ztFFgA70SJ0QkntxYGsgDNCvSuSR5GjF7_J6pYVYc1g,11020
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  celldetective/gui/styles.py,sha256=Vw4wr6MQ4iBwhOY-ZWAxFDZZ3CNohmEnuPPazwhJaho,4129
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- celldetective/gui/survival_ui.py,sha256=2JGLC5m6D_gVLwnBAM7uEvuCKw1Cli8nM9i5s7TIpGg,33612
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- celldetective/gui/tableUI.py,sha256=jkvXkLv2GLimApClvwtwAgpYJi8cpLKBM7MEBdbejbE,34572
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+ celldetective/gui/survival_ui.py,sha256=sWY5rsxLaNHgfUCB0fphBM2c8J4LLY9q5cdSxF1aq1Q,33792
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+ celldetective/gui/tableUI.py,sha256=c0svHoiLNyFlNXcAnXYyqSqBXCR-V6RCl-26HBWIuaQ,42001
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  celldetective/gui/thresholds_gui.py,sha256=b8SkG4DlfxBRjacKTe1NSNkq7rJm8lnSLifH-mg846k,49529
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  celldetective/gui/viewers.py,sha256=buBholjAieaVVb6YinVhxPshEHxBEU3er_N0UrkwAew,27734
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  celldetective/icons/logo-large.png,sha256=FXSwV3u6zEKcfpuSn4unnqB0oUnN9cHqQ9BCKWytrpg,36631
@@ -48,6 +50,7 @@ celldetective/icons/survival2.png,sha256=8zsualD7d9VPAecoFA4Om9TFARErqpJzMg6U7XA
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  celldetective/icons/vignette_signals2.png,sha256=hsVOdQDpEfMGM45aaSeacEm3lvxbquRKKYutiS9qoS0,20743
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  celldetective/icons/vignette_signals2.svg,sha256=muGNcQudV1jG-bmFd9FwV-Wb8PcrRV5osdZ7pHR7Ekk,5947
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  celldetective/links/zenodo.json,sha256=7WKRuZY7MHTR-IChWBbU0i47H_479NtlxsCGaJn9-xM,22728
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+ celldetective/models/pair_signal_detection/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  celldetective/models/segmentation_effectors/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  celldetective/models/segmentation_effectors/primNK_cfse/config_input.json,sha256=gwEGP5wc6iVcwLrR5IbEb-9lTbdQuPyLLFYXh00374U,509
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  celldetective/models/segmentation_effectors/primNK_cfse/cp-cfse-transfer,sha256=ps4BAzGxr2i2R0uBGJqfF9wjg5bIeSeBGQb0YcUChhY,26559970
@@ -58,13 +61,14 @@ celldetective/models/signal_detection/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm
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  celldetective/models/tracking_configs/mcf7.json,sha256=iDjb8i6yxs0GleW39dvY3Ld5bZJatlXJrwI8PG3vCT0,1780
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  celldetective/models/tracking_configs/ricm.json,sha256=L-vmwCR1f89U-qnH2Ms0cBfPFR_dxIWoe2ccH8V-QBA,2727
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  celldetective/models/tracking_configs/ricm2.json,sha256=DDjJ6ScYcDWvlsy7ujPID8v8H28vcNcMuZmNR8XmGxo,2718
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- celldetective/scripts/analyze_signals.py,sha256=23TXGNw-j5xT3ss4mXlnKdBgFLnQ50JUEQOC6_H7Q_0,2203
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- celldetective/scripts/measure_cells.py,sha256=4uRG6Dg0WsO-N8ZaBJ4loWOvX6FdHaCblIFXq6Dtirc,11000
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- celldetective/scripts/segment_cells.py,sha256=55hM3JbMoW5TB43uENgtvADL8BziI17B3GjG4axsj6s,8291
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+ celldetective/scripts/analyze_signals.py,sha256=c_vdd6Z0yAcuNAQJioVH5k6WmOnQBuvRqdWkn6fnCjg,2204
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+ celldetective/scripts/measure_cells.py,sha256=ex9fOcc8CP7RTVBbSyNHX5yHozhhl1XhTmHJXvtIr1Y,11870
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+ celldetective/scripts/measure_relative.py,sha256=lGW3zxtXcr4jEPMMkhLbc--OE6vE5GGlLnxa9ma7yfY,4296
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+ celldetective/scripts/segment_cells.py,sha256=YtTVPjaaLuIqBaV3hlpa__fMeDB3trTPOFJRfEl0jQs,8231
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  celldetective/scripts/segment_cells_thresholds.py,sha256=GbWXa6xoO8s4PinJPZIxAuosw4vpzyJ7FiFYpSURojk,4998
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- celldetective/scripts/track_cells.py,sha256=AaNiYEW4osYKKR2kbdVLOUnQEBbcZIA-D0mkhcxPWTY,7985
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- celldetective/scripts/train_segmentation_model.py,sha256=rw5LD70PrE_SCBvaFt0ri1uSa-YI5DM5exH_BGVlw5Y,8515
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- celldetective/scripts/train_signal_model.py,sha256=9-dmPCLKJ9ypjsV9AwFd-Sb6B6YaHS0QGT218H5hUPo,1861
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+ celldetective/scripts/track_cells.py,sha256=qATUotwsFrINe_uBMGlcCZbFU0iT1J9K8bEZ3TVouIg,8173
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+ celldetective/scripts/train_segmentation_model.py,sha256=Fm-46uhn5zd_1iwRiunBq_ziqiO4Fv-bzS5OgS0B_2c,9284
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+ celldetective/scripts/train_signal_model.py,sha256=LNLIViFEMzyDZvbdfU2L1p90uu2Bha5FLH2qCKSX424,3234
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  tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  tests/test_filters.py,sha256=iJksl_HgquqGzPPv46qpNtlD4rkBpZ5eVtIotgZ7LDs,656
@@ -76,9 +80,9 @@ tests/test_segmentation.py,sha256=_HB8CCq-Ci6amf0xAmDIUuwtBUU_EGpgqLvcvSHrGug,34
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- celldetective-1.1.1.post4.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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- celldetective-1.1.1.post4.dist-info/METADATA,sha256=hN7LbHEXIAV9Saz6XZZIxWnhbVQmvbJ9QRFwJ00PHLo,12418
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- celldetective-1.1.1.post4.dist-info/WHEEL,sha256=Z4pYXqR_rTB7OWNDYFOm1qRk0RX6GFP2o8LgvP453Hk,91
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- celldetective-1.1.1.post4.dist-info/entry_points.txt,sha256=2NU6_EOByvPxqBbCvjwxlVlvnQreqZ3BKRCVIKEv3dg,62
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- celldetective-1.1.1.post4.dist-info/top_level.txt,sha256=6rsIKKfGMKgud7HPuATcpq6EhdXwcg_yknBVWn9x4C4,20
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- celldetective-1.1.1.post4.dist-info/RECORD,,
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+ celldetective-1.2.0.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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+ celldetective-1.2.0.dist-info/METADATA,sha256=hFfaLqmAoHCysOuQXDEC7QT7rjkTZHP1_OPuV2INxrY,12405
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+ celldetective-1.2.0.dist-info/WHEEL,sha256=R0nc6qTxuoLk7ShA2_Y-UWkN8ZdfDBG2B6Eqpz2WXbs,91
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+ celldetective-1.2.0.dist-info/entry_points.txt,sha256=2NU6_EOByvPxqBbCvjwxlVlvnQreqZ3BKRCVIKEv3dg,62
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+ celldetective-1.2.0.dist-info/top_level.txt,sha256=6rsIKKfGMKgud7HPuATcpq6EhdXwcg_yknBVWn9x4C4,20
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+ celldetective-1.2.0.dist-info/RECORD,,
@@ -1,5 +1,5 @@
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  Wheel-Version: 1.0
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- Generator: setuptools (70.3.0)
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+ Generator: setuptools (72.1.0)
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  Root-Is-Purelib: true
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  Tag: py3-none-any
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