celldetective 1.1.1.post3__py3-none-any.whl → 1.1.1.post4__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (19) hide show
  1. celldetective/__main__.py +17 -0
  2. celldetective/gui/classifier_widget.py +10 -3
  3. celldetective/gui/control_panel.py +11 -4
  4. celldetective/gui/layouts.py +9 -7
  5. celldetective/gui/neighborhood_options.py +11 -5
  6. celldetective/gui/signal_annotator.py +85 -25
  7. celldetective/gui/tableUI.py +15 -6
  8. celldetective/io.py +69 -3
  9. celldetective/neighborhood.py +96 -26
  10. celldetective/preprocessing.py +81 -61
  11. celldetective/segmentation.py +67 -29
  12. celldetective/utils.py +51 -12
  13. {celldetective-1.1.1.post3.dist-info → celldetective-1.1.1.post4.dist-info}/METADATA +1 -1
  14. {celldetective-1.1.1.post3.dist-info → celldetective-1.1.1.post4.dist-info}/RECORD +19 -19
  15. {celldetective-1.1.1.post3.dist-info → celldetective-1.1.1.post4.dist-info}/WHEEL +1 -1
  16. tests/test_segmentation.py +1 -1
  17. {celldetective-1.1.1.post3.dist-info → celldetective-1.1.1.post4.dist-info}/LICENSE +0 -0
  18. {celldetective-1.1.1.post3.dist-info → celldetective-1.1.1.post4.dist-info}/entry_points.txt +0 -0
  19. {celldetective-1.1.1.post3.dist-info → celldetective-1.1.1.post4.dist-info}/top_level.txt +0 -0
{celldetective-1.1.1.post3.dist-info → celldetective-1.1.1.post4.dist-info}/RECORD RENAMED
@@ -1,41 +1,41 @@
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  celldetective/__init__.py,sha256=FEZpJKcskBH2IginYzeqPWoR1lVGuyYCXhv7Hnlkoo8,49
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- celldetective/__main__.py,sha256=XFAkq_2cBEkWAVXDGSNFagoQBglyl0Y-GOO3KFc8UqM,13888
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+ celldetective/__main__.py,sha256=TQzL_FLAeEF1YIyRZXMiai40xXy21roPPV23ig4jwG0,14494
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  celldetective/events.py,sha256=s2pWnR3Z1fcB15sET5WsF2Pi6v6qv16hks_m3WiklNs,3658
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  celldetective/extra_properties.py,sha256=ZdWV046RR8jrQPYxLSVVb1cXkWYxfrrLj2tXfc358cU,4179
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  celldetective/filters.py,sha256=b0qKwHor1fvNA_dHovP17nQz8EsW5YlyhT2TJnayn08,3615
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- celldetective/io.py,sha256=ptaX4GadWuf0zOQ3ZWSLCzihEID-YAalPfxW1nqvgIU,80889
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+ celldetective/io.py,sha256=_ivq2zE5ffHadZ-YOWSSX5J1GTlEohg6WPvC3xEBZvQ,82819
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  celldetective/measure.py,sha256=HDQZfSRx3daOCV5Snu1paYU5JYkwu8engO2qZqhTAUo,48089
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- celldetective/neighborhood.py,sha256=QCuhesMHGyr3c3ys9wWcNR1HM6CHdHe51R8upoolgPw,49514
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- celldetective/preprocessing.py,sha256=dpor6ry6RChzd-rdH98SQc0zvLZv95YZB5KIGym1mEY,37388
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- celldetective/segmentation.py,sha256=Hu4-lOJ4UhPw2o0Hn_NPOCHsa6Iwsw5A3PR6X3Tzbb8,29196
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+ celldetective/neighborhood.py,sha256=Jl9VujKYZ9R2pcqmPt5HyeCy5LieNal-oCsD8b7uIWQ,51182
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+ celldetective/preprocessing.py,sha256=TKOJTc5o4rSgXqtYeZz-0ox062dD494VMiie3L-9aV4,38305
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+ celldetective/segmentation.py,sha256=L2VJKmOewC1CNZPiWCO6yUfxt78u9k1NHPr2qTyTaBM,30458
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  celldetective/signals.py,sha256=P7eiDZGGIAYCFBKjGCBi8gMBvJYywxlxZNzyGgw-26Y,102783
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  celldetective/tracking.py,sha256=A0mhdF4uq4m8OX1-rhtuhG69rlh_6Pb34Aebu7hIeKM,37601
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- celldetective/utils.py,sha256=f0VvWv5ZgndZiWsFFDs0O6tJlRXkRtPW0xEKM_R90yo,77581
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+ celldetective/utils.py,sha256=ahHZkLr6ceUDY5sN6uOcGzqKaLjpOIdB_kjhXj_gggA,79003
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  celldetective/datasets/segmentation_annotations/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  celldetective/datasets/signal_annotations/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  celldetective/gui/__init__.py,sha256=y2dvrUdJi17QMgPjl8WN3XFHYzJpu2ul4_8y7MQV1Bk,941
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  celldetective/gui/about.py,sha256=i-y54Opb10pKTVNUEcJC-D6Cbiqud2EJ3ZLayXqhdqc,1715
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  celldetective/gui/analyze_block.py,sha256=WD3JQQylx_dVozFCvNqrOyR6LcNHV7R1_gGh7XqOVeI,25423
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  celldetective/gui/btrack_options.py,sha256=eQEf63yTUsPCN-d1LqgAMmUQpfv2FH85FqnOSaR-9Q8,35575
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- celldetective/gui/classifier_widget.py,sha256=52a3kOfU3uMEzUYMIOHGqiy-Q5itMEvcG-3JYrO34I8,16918
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+ celldetective/gui/classifier_widget.py,sha256=PNg72YlFvKjGdlARaquvY4ALpNV7KZps9LJqAemSUqc,17225
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  celldetective/gui/configure_new_exp.py,sha256=ANJ-Zn4sjBphtj_aoJu6m1PFEKyv9gxeh9XqS6xOGjk,18969
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- celldetective/gui/control_panel.py,sha256=wcDqe4XaDJRMmPmWKJpxd0D9V4_DrdRGnEH6D7B_IK0,17557
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+ celldetective/gui/control_panel.py,sha256=srpQMxMA8ZOuxqfzRgFZl0OtV1H9bgf2nt20A7vtFps,18101
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  celldetective/gui/gui_utils.py,sha256=PidFfdc8XASeIzZO5pfKgwqe4vROG7-KpYMcBZ42jdw,22673
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  celldetective/gui/json_readers.py,sha256=fTrNrlxv9NCae8ZJexBEHxI3yCLRqt6F0Yo1OeDycfA,3686
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- celldetective/gui/layouts.py,sha256=sHTWXsKdRoHYYrPELEW7djNetevcQ-RKW9aQQ2FvWoc,37644
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+ celldetective/gui/layouts.py,sha256=MCmGOjZFoL2a24Gu6WH9UgOnI6ZbGNqWxEEf1QMVqqQ,37678
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  celldetective/gui/measurement_options.py,sha256=i0CdAfupHJAqhOT7RsufEK919sAzQnFBkQO4IAMYZL0,47704
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- celldetective/gui/neighborhood_options.py,sha256=sdKxVRliZtuKSpcPfnFxqkW4V8rN2tzjhDxOPVmElyE,20191
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+ celldetective/gui/neighborhood_options.py,sha256=sASKSSRl4Fwu0NwLaH-xX0SCvGRiyRA5JuNA288lP8o,20436
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  celldetective/gui/plot_measurements.py,sha256=xUoGxV6uXcen-t4yWtAmcGTUayICI-FxTVKPrWMNlfg,51799
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  celldetective/gui/plot_signals_ui.py,sha256=TwWU2u3_mkRNsM8er0kI_kwr5EoZ29YEzlr0cQzyW4A,43732
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  celldetective/gui/process_block.py,sha256=7n9glZ1ojEi1bObqwIj4giNhrteT69X1EPMQ1hK63aU,53565
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  celldetective/gui/retrain_segmentation_model_options.py,sha256=VixtKZTjoJFJy8X6aDbAf0zgK46aXj3I6oPP_92yqhA,22457
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  celldetective/gui/retrain_signal_model_options.py,sha256=gdK1ITuaTPNvnQWXYuUBcP_pH5cvaEEns5XejjTi_Eo,17854
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  celldetective/gui/seg_model_loader.py,sha256=uKp8oab-4QdTGqb-tb6bOD-FLD_154GOvgWFYz97BwY,17350
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- celldetective/gui/signal_annotator.py,sha256=4ymMpo_GjSBsJSRkyNKrWRLy0EFXHINbFtp9ykDqfGE,84864
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+ celldetective/gui/signal_annotator.py,sha256=yHsVCu6Nm8_7bxXfvBfx-xymH9bXBpnQ4TUih1d66cM,86791
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  celldetective/gui/signal_annotator_options.py,sha256=-Q7f8eCwniqbgLJqMCa91Wc-V3VHAZidwt7LPd4Z5yU,10879
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  celldetective/gui/styles.py,sha256=Vw4wr6MQ4iBwhOY-ZWAxFDZZ3CNohmEnuPPazwhJaho,4129
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  celldetective/gui/survival_ui.py,sha256=2JGLC5m6D_gVLwnBAM7uEvuCKw1Cli8nM9i5s7TIpGg,33612
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- celldetective/gui/tableUI.py,sha256=7QSvkvVpglcluLxqhKjehmYDwHoyZs0R7uLcJK_9fhs,34268
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+ celldetective/gui/tableUI.py,sha256=jkvXkLv2GLimApClvwtwAgpYJi8cpLKBM7MEBdbejbE,34572
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  celldetective/gui/thresholds_gui.py,sha256=b8SkG4DlfxBRjacKTe1NSNkq7rJm8lnSLifH-mg846k,49529
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  celldetective/gui/viewers.py,sha256=buBholjAieaVVb6YinVhxPshEHxBEU3er_N0UrkwAew,27734
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  celldetective/icons/logo-large.png,sha256=FXSwV3u6zEKcfpuSn4unnqB0oUnN9cHqQ9BCKWytrpg,36631
@@ -72,13 +72,13 @@ tests/test_io.py,sha256=gk5FmoI7ANEczUtNXYRxc48KzkfYzemwS_eYaLq4_NI,2093
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  tests/test_measure.py,sha256=FEUAs1rVHylvIvubCb0bJDNGZLVmkgXNgI3NaGQ1dA8,4542
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  tests/test_neighborhood.py,sha256=gk5FmoI7ANEczUtNXYRxc48KzkfYzemwS_eYaLq4_NI,2093
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  tests/test_preprocessing.py,sha256=FI-Wk-kc4wWmOQg_NLCUIZC1oti396wr5cC-BauBai0,1436
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- tests/test_segmentation.py,sha256=-3b7o_fUVMYxfVwX5VHFqRF0dDXObSTtylf5XQGcq1A,3493
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+ tests/test_segmentation.py,sha256=_HB8CCq-Ci6amf0xAmDIUuwtBUU_EGpgqLvcvSHrGug,3427
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  tests/test_signals.py,sha256=No4cah6KxplhDcKXnU8RrA7eDla4hWw6ccf7xGnBokU,3599
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  tests/test_tracking.py,sha256=8hebWSqEIuttD1ABn-6dKCT7EXKRR7-4RwyFWi1WPFo,8800
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  tests/test_utils.py,sha256=NKRCAC1d89aBK5cWjTb7-pInYow901RrT-uBlIdz4KI,3692
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- celldetective-1.1.1.post3.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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- celldetective-1.1.1.post3.dist-info/METADATA,sha256=r2-IaTUiO4VxRyIFdQJbsYx_MJltOPt76Emkf8XqAtk,12418
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- celldetective-1.1.1.post3.dist-info/WHEEL,sha256=y4mX-SOX4fYIkonsAGA5N0Oy-8_gI4FXw5HNI1xqvWg,91
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- celldetective-1.1.1.post3.dist-info/entry_points.txt,sha256=2NU6_EOByvPxqBbCvjwxlVlvnQreqZ3BKRCVIKEv3dg,62
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- celldetective-1.1.1.post3.dist-info/top_level.txt,sha256=6rsIKKfGMKgud7HPuATcpq6EhdXwcg_yknBVWn9x4C4,20
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- celldetective-1.1.1.post3.dist-info/RECORD,,
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+ celldetective-1.1.1.post4.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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+ celldetective-1.1.1.post4.dist-info/METADATA,sha256=hN7LbHEXIAV9Saz6XZZIxWnhbVQmvbJ9QRFwJ00PHLo,12418
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+ celldetective-1.1.1.post4.dist-info/WHEEL,sha256=Z4pYXqR_rTB7OWNDYFOm1qRk0RX6GFP2o8LgvP453Hk,91
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+ celldetective-1.1.1.post4.dist-info/entry_points.txt,sha256=2NU6_EOByvPxqBbCvjwxlVlvnQreqZ3BKRCVIKEv3dg,62
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+ celldetective-1.1.1.post4.dist-info/top_level.txt,sha256=6rsIKKfGMKgud7HPuATcpq6EhdXwcg_yknBVWn9x4C4,20
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+ celldetective-1.1.1.post4.dist-info/RECORD,,
{celldetective-1.1.1.post3.dist-info → celldetective-1.1.1.post4.dist-info}/WHEEL RENAMED
@@ -1,5 +1,5 @@
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  Wheel-Version: 1.0
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- Generator: setuptools (70.2.0)
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+ Generator: setuptools (70.3.0)
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  Root-Is-Purelib: true
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  Tag: py3-none-any
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tests/test_segmentation.py CHANGED
@@ -44,7 +44,7 @@ class TestDLMCF7Segmentation(unittest.TestCase):
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  def test_correct_segmentation_with_transferred_model(self):
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  labels = segment(self.stack, "MCF7_h_versatile", channels=self.channels, spatial_calibration=self.spatial_calibration, view_on_napari=False,
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- use_gpu=True, time_flat_normalization=False, time_flat_percentiles=(0.0,99.99))
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+ use_gpu=True)
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  np.testing.assert_array_equal(labels[0], labels[1])
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  self.binary_label_true = self.label_true.copy().astype(float)