celldetective 1.0.2__py3-none-any.whl → 1.1.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (56) hide show
  1. celldetective/__main__.py +2 -2
  2. celldetective/events.py +2 -44
  3. celldetective/filters.py +4 -5
  4. celldetective/gui/__init__.py +1 -1
  5. celldetective/gui/analyze_block.py +37 -10
  6. celldetective/gui/btrack_options.py +24 -23
  7. celldetective/gui/classifier_widget.py +62 -19
  8. celldetective/gui/configure_new_exp.py +32 -35
  9. celldetective/gui/control_panel.py +115 -81
  10. celldetective/gui/gui_utils.py +674 -396
  11. celldetective/gui/json_readers.py +7 -6
  12. celldetective/gui/layouts.py +755 -0
  13. celldetective/gui/measurement_options.py +168 -487
  14. celldetective/gui/neighborhood_options.py +322 -270
  15. celldetective/gui/plot_measurements.py +1114 -0
  16. celldetective/gui/plot_signals_ui.py +20 -20
  17. celldetective/gui/process_block.py +449 -169
  18. celldetective/gui/retrain_segmentation_model_options.py +27 -26
  19. celldetective/gui/retrain_signal_model_options.py +25 -24
  20. celldetective/gui/seg_model_loader.py +31 -27
  21. celldetective/gui/signal_annotator.py +2326 -2295
  22. celldetective/gui/signal_annotator_options.py +18 -16
  23. celldetective/gui/styles.py +16 -1
  24. celldetective/gui/survival_ui.py +61 -39
  25. celldetective/gui/tableUI.py +60 -23
  26. celldetective/gui/thresholds_gui.py +68 -66
  27. celldetective/gui/viewers.py +596 -0
  28. celldetective/io.py +234 -23
  29. celldetective/measure.py +37 -32
  30. celldetective/neighborhood.py +495 -27
  31. celldetective/preprocessing.py +683 -0
  32. celldetective/scripts/analyze_signals.py +7 -0
  33. celldetective/scripts/measure_cells.py +12 -0
  34. celldetective/scripts/segment_cells.py +5 -0
  35. celldetective/scripts/track_cells.py +11 -0
  36. celldetective/signals.py +221 -98
  37. celldetective/tracking.py +0 -1
  38. celldetective/utils.py +178 -36
  39. celldetective-1.1.0.dist-info/METADATA +305 -0
  40. celldetective-1.1.0.dist-info/RECORD +80 -0
  41. {celldetective-1.0.2.dist-info → celldetective-1.1.0.dist-info}/top_level.txt +1 -0
  42. tests/__init__.py +0 -0
  43. tests/test_events.py +28 -0
  44. tests/test_filters.py +24 -0
  45. tests/test_io.py +70 -0
  46. tests/test_measure.py +141 -0
  47. tests/test_neighborhood.py +70 -0
  48. tests/test_segmentation.py +93 -0
  49. tests/test_signals.py +135 -0
  50. tests/test_tracking.py +164 -0
  51. tests/test_utils.py +71 -0
  52. celldetective-1.0.2.dist-info/METADATA +0 -192
  53. celldetective-1.0.2.dist-info/RECORD +0 -66
  54. {celldetective-1.0.2.dist-info → celldetective-1.1.0.dist-info}/LICENSE +0 -0
  55. {celldetective-1.0.2.dist-info → celldetective-1.1.0.dist-info}/WHEEL +0 -0
  56. {celldetective-1.0.2.dist-info → celldetective-1.1.0.dist-info}/entry_points.txt +0 -0
celldetective/gui/json_readers.py CHANGED
@@ -4,10 +4,11 @@ from PyQt5.QtWidgets import QWidget, QVBoxLayout, QScrollArea, QLabel, QHBoxLayo
4
4
  from PyQt5.QtCore import Qt
5
5
  import sys
6
6
  import configparser
7
+ from celldetective.gui import Styles
7
8
 
8
- class ConfigEditor(QWidget):
9
+ class ConfigEditor(QWidget, Styles):
9
10
 
10
- def __init__(self, parent):
11
+ def __init__(self, parent_window):
11
12
 
12
13
  """
13
14
  Load and edit the experiment config.
@@ -15,8 +16,8 @@ class ConfigEditor(QWidget):
15
16
 
16
17
  super().__init__()
17
18
 
18
- self.parent = parent
19
- self.config_path = self.parent.exp_config
19
+ self.parent_window = parent_window
20
+ self.config_path = self.parent_window.exp_config
20
21
 
21
22
  self.setGeometry(500,200,400,700)
22
23
 
@@ -78,7 +79,7 @@ class ConfigEditor(QWidget):
78
79
  # Add a save button
79
80
  save_layout = QHBoxLayout()
80
81
  save_button = QPushButton('Save')
81
- save_button.setStyleSheet(self.parent.parent.button_style_sheet)
82
+ save_button.setStyleSheet(self.button_style_sheet)
82
83
  save_button.clicked.connect(self.save_config)
83
84
  save_button.setShortcut("Return")
84
85
  #save_button.setIcon(QIcon_from_svg(self.parent.abs_path+f"/icons/save.svg", color='white'))
@@ -109,5 +110,5 @@ class ConfigEditor(QWidget):
109
110
  with open(file_name, 'w') as f:
110
111
  config.write(f)
111
112
 
112
- self.parent.load_configuration()
113
+ self.parent_window.load_configuration()
113
114
  self.close()