cellarr 0.0.1__py3-none-any.whl

cellarr/__init__.py

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+import sys
+
+if sys.version_info[:2] >= (3, 8):
+    # TODO: Import directly (no need for conditional) when `python_requires = >= 3.8`
+    from importlib.metadata import PackageNotFoundError, version  # pragma: no cover
+else:
+    from importlib_metadata import PackageNotFoundError, version  # pragma: no cover
+
+try:
+    # Change here if project is renamed and does not equal the package name
+    dist_name = __name__
+    __version__ = version(dist_name)
+except PackageNotFoundError:  # pragma: no cover
+    __version__ = "unknown"
+finally:
+    del version, PackageNotFoundError

cellarr/skeleton.py

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+"""
+This is a skeleton file that can serve as a starting point for a Python
+console script. To run this script uncomment the following lines in the
+``[options.entry_points]`` section in ``setup.cfg``::
+
+    console_scripts =
+         fibonacci = cellarr.skeleton:run
+
+Then run ``pip install .`` (or ``pip install -e .`` for editable mode)
+which will install the command ``fibonacci`` inside your current environment.
+
+Besides console scripts, the header (i.e. until ``_logger``...) of this file can
+also be used as template for Python modules.
+
+Note:
+    This file can be renamed depending on your needs or safely removed if not needed.
+
+References:
+    - https://setuptools.pypa.io/en/latest/userguide/entry_point.html
+    - https://pip.pypa.io/en/stable/reference/pip_install
+"""
+
+import argparse
+import logging
+import sys
+
+from cellarr import __version__
+
+__author__ = "Jayaram Kancherla"
+__copyright__ = "Jayaram Kancherla"
+__license__ = "MIT"
+
+_logger = logging.getLogger(__name__)
+
+
+# ---- Python API ----
+# The functions defined in this section can be imported by users in their
+# Python scripts/interactive interpreter, e.g. via
+# `from cellarr.skeleton import fib`,
+# when using this Python module as a library.
+
+
+def fib(n):
+    """Fibonacci example function
+
+    Args:
+      n (int): integer
+
+    Returns:
+      int: n-th Fibonacci number
+    """
+    assert n > 0
+    a, b = 1, 1
+    for _i in range(n - 1):
+        a, b = b, a + b
+    return a
+
+
+# ---- CLI ----
+# The functions defined in this section are wrappers around the main Python
+# API allowing them to be called directly from the terminal as a CLI
+# executable/script.
+
+
+def parse_args(args):
+    """Parse command line parameters
+
+    Args:
+      args (List[str]): command line parameters as list of strings
+          (for example  ``["--help"]``).
+
+    Returns:
+      :obj:`argparse.Namespace`: command line parameters namespace
+    """
+    parser = argparse.ArgumentParser(description="Just a Fibonacci demonstration")
+    parser.add_argument(
+        "--version",
+        action="version",
+        version=f"cellarr {__version__}",
+    )
+    parser.add_argument(dest="n", help="n-th Fibonacci number", type=int, metavar="INT")
+    parser.add_argument(
+        "-v",
+        "--verbose",
+        dest="loglevel",
+        help="set loglevel to INFO",
+        action="store_const",
+        const=logging.INFO,
+    )
+    parser.add_argument(
+        "-vv",
+        "--very-verbose",
+        dest="loglevel",
+        help="set loglevel to DEBUG",
+        action="store_const",
+        const=logging.DEBUG,
+    )
+    return parser.parse_args(args)
+
+
+def setup_logging(loglevel):
+    """Setup basic logging
+
+    Args:
+      loglevel (int): minimum loglevel for emitting messages
+    """
+    logformat = "[%(asctime)s] %(levelname)s:%(name)s:%(message)s"
+    logging.basicConfig(
+        level=loglevel, stream=sys.stdout, format=logformat, datefmt="%Y-%m-%d %H:%M:%S"
+    )
+
+
+def main(args):
+    """Wrapper allowing :func:`fib` to be called with string arguments in a CLI fashion
+
+    Instead of returning the value from :func:`fib`, it prints the result to the
+    ``stdout`` in a nicely formatted message.
+
+    Args:
+      args (List[str]): command line parameters as list of strings
+          (for example  ``["--verbose", "42"]``).
+    """
+    args = parse_args(args)
+    setup_logging(args.loglevel)
+    _logger.debug("Starting crazy calculations...")
+    print(f"The {args.n}-th Fibonacci number is {fib(args.n)}")
+    _logger.info("Script ends here")
+
+
+def run():
+    """Calls :func:`main` passing the CLI arguments extracted from :obj:`sys.argv`
+
+    This function can be used as entry point to create console scripts with setuptools.
+    """
+    main(sys.argv[1:])
+
+
+if __name__ == "__main__":
+    # ^  This is a guard statement that will prevent the following code from
+    #    being executed in the case someone imports this file instead of
+    #    executing it as a script.
+    #    https://docs.python.org/3/library/__main__.html
+
+    # After installing your project with pip, users can also run your Python
+    # modules as scripts via the ``-m`` flag, as defined in PEP 338::
+    #
+    #     python -m cellarr.skeleton 42
+    #
+    run()

cellarr-0.0.1.dist-info/LICENSE.txt

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+The MIT License (MIT)
+
+Copyright (c) 2024 Jayaram Kancherla
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

cellarr-0.0.1.dist-info/METADATA

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+Metadata-Version: 2.1
+Name: cellarr
+Version: 0.0.1
+Summary: TileDB-based array storage for single-cell data collections.
+Home-page: https://github.com/BiocPy/cellarr
+Author: Jayaram Kancherla
+Author-email: jayaram.kancherla@gmail.com
+License: MIT
+Project-URL: Documentation, https://github.com/BiocPy/cellarr
+Platform: any
+Classifier: Development Status :: 4 - Beta
+Classifier: Programming Language :: Python
+Requires-Python: >=3.8
+Description-Content-Type: text/markdown; charset=UTF-8; variant=GFM
+License-File: LICENSE.txt
+Requires-Dist: importlib-metadata ; python_version < "3.8"
+Provides-Extra: testing
+Requires-Dist: setuptools ; extra == 'testing'
+Requires-Dist: pytest ; extra == 'testing'
+Requires-Dist: pytest-cov ; extra == 'testing'
+
+<!-- These are examples of badges you might want to add to your README:
+     please update the URLs accordingly
+
+[![Built Status](https://api.cirrus-ci.com/github/<USER>/cellarr.svg?branch=main)](https://cirrus-ci.com/github/<USER>/cellarr)
+[![ReadTheDocs](https://readthedocs.org/projects/cellarr/badge/?version=latest)](https://cellarr.readthedocs.io/en/stable/)
+[![Coveralls](https://img.shields.io/coveralls/github/<USER>/cellarr/main.svg)](https://coveralls.io/r/<USER>/cellarr)
+[![PyPI-Server](https://img.shields.io/pypi/v/cellarr.svg)](https://pypi.org/project/cellarr/)
+[![Conda-Forge](https://img.shields.io/conda/vn/conda-forge/cellarr.svg)](https://anaconda.org/conda-forge/cellarr)
+[![Monthly Downloads](https://pepy.tech/badge/cellarr/month)](https://pepy.tech/project/cellarr)
+[![Twitter](https://img.shields.io/twitter/url/http/shields.io.svg?style=social&label=Twitter)](https://twitter.com/cellarr)
+-->
+
+[![Project generated with PyScaffold](https://img.shields.io/badge/-PyScaffold-005CA0?logo=pyscaffold)](https://pyscaffold.org/)
+
+# cellarr
+
+> Add a short description here!
+
+A longer description of your project goes here...
+
+
+<!-- pyscaffold-notes -->
+
+## Note
+
+This project has been set up using PyScaffold 4.5. For details and usage
+information on PyScaffold see https://pyscaffold.org/.

cellarr-0.0.1.dist-info/RECORD

@@ -0,0 +1,7 @@
+cellarr/__init__.py,sha256=pH5i4Fj1tbXLqLtTVIdoojiplZssQn0nnud8-HXodRE,577
+cellarr/skeleton.py,sha256=etm2brd3Zl4PrjeS1-u2Huy0aBxdAXKJrtTg_n-dmfc,4222
+cellarr-0.0.1.dist-info/LICENSE.txt,sha256=kXGI4eKM3dFP79vCaYersRg8MA4GYpZ9oEiGwdIGGA8,1084
+cellarr-0.0.1.dist-info/METADATA,sha256=lg9_BpxDOrSzemPDtB3HsGBQmsLz-DgdhmObMfq4M1A,2059
+cellarr-0.0.1.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
+cellarr-0.0.1.dist-info/top_level.txt,sha256=vPB9dw4REE68L6y0ca-sS_gUMsPG-YOSJDzZ6ZJrrFY,8
+cellarr-0.0.1.dist-info/RECORD,,

cellarr-0.0.1.dist-info/WHEEL

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+Wheel-Version: 1.0
+Generator: bdist_wheel (0.43.0)
+Root-Is-Purelib: true
+Tag: py3-none-any
+

cellarr-0.0.1.dist-info/top_level.txt

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+cellarr