causaliq-knowledge 0.2.0__py3-none-any.whl → 0.4.0__py3-none-any.whl

causaliq_knowledge/cache/token_cache.py

@@ -0,0 +1,666 @@
+"""
+TokenCache: SQLite-backed cache with shared token dictionary.
+
+Provides efficient storage for cache entries with:
+- Fast indexed key lookup via SQLite
+- In-memory mode via :memory:
+- Concurrency support via SQLite locking
+- Shared token dictionary for cross-entry compression
+
+Note: This module is designed for future migration to causaliq-core.
+"""
+
+from __future__ import annotations
+
+import sqlite3
+from contextlib import contextmanager
+from datetime import datetime, timezone
+from pathlib import Path
+from typing import TYPE_CHECKING, Any, Iterator
+
+if TYPE_CHECKING:  # pragma: no cover
+    from causaliq_knowledge.cache.encoders.base import EntryEncoder
+
+
+class TokenCache:
+    """SQLite-backed cache with shared token dictionary.
+
+    Attributes:
+        db_path: Path to SQLite database file, or ":memory:" for in-memory.
+        conn: SQLite connection (None until open() called or context entered).
+
+    Example:
+        >>> with TokenCache(":memory:") as cache:
+        ...     cache.put("abc123", "test", b"hello")
+        ...     data = cache.get("abc123", "test")
+    """
+
+    # SQL statements for schema creation
+    _SCHEMA_SQL = """
+        -- Token dictionary (grows dynamically, shared across encoders)
+        CREATE TABLE IF NOT EXISTS tokens (
+            id INTEGER PRIMARY KEY AUTOINCREMENT,
+            token TEXT UNIQUE NOT NULL,
+            frequency INTEGER DEFAULT 1
+        );
+
+        -- Generic cache entries
+        CREATE TABLE IF NOT EXISTS cache_entries (
+            hash TEXT NOT NULL,
+            entry_type TEXT NOT NULL,
+            data BLOB NOT NULL,
+            created_at TEXT NOT NULL,
+            metadata BLOB,
+            hit_count INTEGER DEFAULT 0,
+            last_accessed_at TEXT,
+            PRIMARY KEY (hash, entry_type)
+        );
+
+        -- Indexes for common queries
+        CREATE INDEX IF NOT EXISTS idx_entry_type
+            ON cache_entries(entry_type);
+        CREATE INDEX IF NOT EXISTS idx_created_at
+            ON cache_entries(created_at);
+    """
+
+    def __init__(self, db_path: str | Path) -> None:
+        """Initialise TokenCache.
+
+        Args:
+            db_path: Path to SQLite database file. Use ":memory:" for
+                in-memory database (fast, non-persistent).
+        """
+        self.db_path = str(db_path)
+        self._conn: sqlite3.Connection | None = None
+        # In-memory token dictionary for fast lookup
+        self._token_to_id: dict[str, int] = {}
+        self._id_to_token: dict[int, str] = {}
+        # Registered encoders for auto-encoding (entry_type -> encoder)
+        self._encoders: dict[str, EntryEncoder] = {}
+
+    @property
+    def conn(self) -> sqlite3.Connection:
+        """Get the database connection, raising if not connected."""
+        if self._conn is None:
+            raise RuntimeError(
+                "TokenCache not connected. Use 'with cache:' or call open()."
+            )
+        return self._conn
+
+    @property
+    def is_open(self) -> bool:
+        """Check if the cache connection is open."""
+        return self._conn is not None
+
+    @property
+    def is_memory(self) -> bool:
+        """Check if this is an in-memory database."""
+        return self.db_path == ":memory:"
+
+    def open(self) -> TokenCache:
+        """Open the database connection and initialise schema.
+
+        Returns:
+            self for method chaining.
+
+        Raises:
+            RuntimeError: If already connected.
+        """
+        if self._conn is not None:
+            raise RuntimeError("TokenCache already connected.")
+
+        self._conn = sqlite3.connect(
+            self.db_path,
+            check_same_thread=False,  # Allow multi-threaded access
+        )
+        # Enable foreign keys and WAL mode for better concurrency
+        self._conn.execute("PRAGMA foreign_keys = ON")
+        if not self.is_memory:
+            self._conn.execute("PRAGMA journal_mode = WAL")
+
+        self._init_schema()
+        return self
+
+    def close(self) -> None:
+        """Close the database connection."""
+        if self._conn is not None:
+            self._conn.close()
+            self._conn = None
+
+    def _init_schema(self) -> None:
+        """Create database tables if they don't exist."""
+        self.conn.executescript(self._SCHEMA_SQL)
+        self.conn.commit()
+        self._load_token_dict()
+
+    def _load_token_dict(self) -> None:
+        """Load token dictionary from database into memory."""
+        cursor = self.conn.execute("SELECT id, token FROM tokens")
+        self._token_to_id.clear()
+        self._id_to_token.clear()
+        for row in cursor:
+            token_id, token = row[0], row[1]
+            self._token_to_id[token] = token_id
+            self._id_to_token[token_id] = token
+
+    def __enter__(self) -> TokenCache:
+        """Context manager entry - opens connection."""
+        return self.open()
+
+    def __exit__(
+        self,
+        exc_type: type[BaseException] | None,
+        exc_val: BaseException | None,
+        exc_tb: object,
+    ) -> None:
+        """Context manager exit - closes connection."""
+        self.close()
+
+    @contextmanager
+    def transaction(self) -> Iterator[sqlite3.Cursor]:
+        """Context manager for a database transaction.
+
+        Commits on success, rolls back on exception.
+
+        Yields:
+            SQLite cursor for executing statements.
+        """
+        cursor = self.conn.cursor()
+        try:
+            yield cursor
+            self.conn.commit()
+        except Exception:
+            self.conn.rollback()
+            raise
+        finally:
+            cursor.close()
+
+    def _utcnow_iso(self) -> str:
+        """Get current UTC time as ISO 8601 string."""
+        return datetime.now(timezone.utc).isoformat()
+
+    def table_exists(self, table_name: str) -> bool:
+        """Check if a table exists in the database.
+
+        Args:
+            table_name: Name of the table to check.
+
+        Returns:
+            True if table exists, False otherwise.
+        """
+        cursor = self.conn.execute(
+            "SELECT name FROM sqlite_master " "WHERE type='table' AND name=?",
+            (table_name,),
+        )
+        return cursor.fetchone() is not None
+
+    def entry_count(self, entry_type: str | None = None) -> int:
+        """Count cache entries, optionally filtered by type.
+
+        Args:
+            entry_type: If provided, count only entries of this type.
+
+        Returns:
+            Number of matching entries.
+        """
+        if entry_type is None:
+            cursor = self.conn.execute("SELECT COUNT(*) FROM cache_entries")
+        else:
+            cursor = self.conn.execute(
+                "SELECT COUNT(*) FROM cache_entries WHERE entry_type = ?",
+                (entry_type,),
+            )
+        row = cursor.fetchone()
+        return int(row[0]) if row else 0
+
+    def list_entry_types(self) -> list[str]:
+        """List all distinct entry types in the cache.
+
+        Returns:
+            List of entry type names found in the cache.
+
+        Example:
+            >>> with TokenCache(":memory:") as cache:
+            ...     cache.register_encoder("llm", LLMEntryEncoder())
+            ...     cache.put_data("h1", "llm", {"data": "test"})
+            ...     cache.list_entry_types()
+            ['llm']
+        """
+        cursor = self.conn.execute(
+            "SELECT DISTINCT entry_type FROM cache_entries ORDER BY entry_type"
+        )
+        return [row[0] for row in cursor.fetchall()]
+
+    def token_count(self) -> int:
+        """Count tokens in the dictionary.
+
+        Returns:
+            Number of tokens.
+        """
+        cursor = self.conn.execute("SELECT COUNT(*) FROM tokens")
+        row = cursor.fetchone()
+        return int(row[0]) if row else 0
+
+    def total_hits(self, entry_type: str | None = None) -> int:
+        """Get total cache hits across all entries.
+
+        Args:
+            entry_type: If provided, count only hits for this entry type.
+
+        Returns:
+            Total hit count.
+        """
+        if entry_type is None:
+            cursor = self.conn.execute(
+                "SELECT COALESCE(SUM(hit_count), 0) FROM cache_entries"
+            )
+        else:
+            cursor = self.conn.execute(
+                "SELECT COALESCE(SUM(hit_count), 0) FROM cache_entries "
+                "WHERE entry_type = ?",
+                (entry_type,),
+            )
+        row = cursor.fetchone()
+        return int(row[0]) if row else 0
+
+    def get_or_create_token(self, token: str) -> int:
+        """Get token ID, creating a new entry if needed.
+
+        This method is used by encoders to compress strings to integer IDs.
+        The token dictionary grows dynamically as new tokens are encountered.
+
+        Args:
+            token: The string token to look up or create.
+
+        Returns:
+            Integer ID for the token (1-65535 range).
+
+        Raises:
+            ValueError: If token dictionary exceeds uint16 capacity.
+        """
+        # Fast path: check in-memory cache
+        if token in self._token_to_id:
+            return self._token_to_id[token]
+
+        # Slow path: insert into database
+        cursor = self.conn.execute(
+            "INSERT INTO tokens (token) VALUES (?) RETURNING id",
+            (token,),
+        )
+        token_id: int = cursor.fetchone()[0]
+        self.conn.commit()
+
+        # Check uint16 capacity (max 65,535 tokens)
+        if token_id > 65535:  # pragma: no cover
+            raise ValueError(
+                f"Token dictionary exceeded uint16 capacity: {token_id}"
+            )
+
+        # Update in-memory cache
+        self._token_to_id[token] = token_id
+        self._id_to_token[token_id] = token
+
+        return token_id
+
+    def get_token(self, token_id: int) -> str | None:
+        """Get token string by ID.
+
+        This method is used by decoders to expand integer IDs back to strings.
+
+        Args:
+            token_id: The integer ID to look up.
+
+        Returns:
+            The token string, or None if not found.
+        """
+        return self._id_to_token.get(token_id)
+
+    # ========================================================================
+    # Cache entry operations
+    # ========================================================================
+
+    def put(
+        self,
+        hash: str,
+        entry_type: str,
+        data: bytes,
+        metadata: bytes | None = None,
+    ) -> None:
+        """Store a cache entry.
+
+        Args:
+            hash: Unique identifier for the entry (e.g. SHA-256 truncated).
+            entry_type: Type of entry (e.g. 'llm', 'graph', 'score').
+            data: Binary data to store.
+            metadata: Optional binary metadata.
+        """
+        self.conn.execute(
+            "INSERT OR REPLACE INTO cache_entries "
+            "(hash, entry_type, data, created_at, metadata) "
+            "VALUES (?, ?, ?, ?, ?)",
+            (hash, entry_type, data, self._utcnow_iso(), metadata),
+        )
+        self.conn.commit()
+
+    def get(self, hash: str, entry_type: str) -> bytes | None:
+        """Retrieve a cache entry and increment hit count.
+
+        Args:
+            hash: Unique identifier for the entry.
+            entry_type: Type of entry to retrieve.
+
+        Returns:
+            Binary data if found, None otherwise.
+        """
+        cursor = self.conn.execute(
+            "SELECT data FROM cache_entries "
+            "WHERE hash = ? AND entry_type = ?",
+            (hash, entry_type),
+        )
+        row = cursor.fetchone()
+        if row:
+            # Increment hit count and update last accessed time
+            self.conn.execute(
+                "UPDATE cache_entries SET hit_count = hit_count + 1, "
+                "last_accessed_at = ? WHERE hash = ? AND entry_type = ?",
+                (self._utcnow_iso(), hash, entry_type),
+            )
+            self.conn.commit()
+            result: bytes = row[0]
+            return result
+        return None
+
+    def get_with_metadata(
+        self, hash: str, entry_type: str
+    ) -> tuple[bytes, bytes | None] | None:
+        """Retrieve a cache entry with its metadata.
+
+        Args:
+            hash: Unique identifier for the entry.
+            entry_type: Type of entry to retrieve.
+
+        Returns:
+            Tuple of (data, metadata) if found, None otherwise.
+        """
+        cursor = self.conn.execute(
+            "SELECT data, metadata FROM cache_entries "
+            "WHERE hash = ? AND entry_type = ?",
+            (hash, entry_type),
+        )
+        row = cursor.fetchone()
+        return (row[0], row[1]) if row else None
+
+    def exists(self, hash: str, entry_type: str) -> bool:
+        """Check if a cache entry exists.
+
+        Args:
+            hash: Unique identifier for the entry.
+            entry_type: Type of entry to check.
+
+        Returns:
+            True if entry exists, False otherwise.
+        """
+        cursor = self.conn.execute(
+            "SELECT 1 FROM cache_entries " "WHERE hash = ? AND entry_type = ?",
+            (hash, entry_type),
+        )
+        return cursor.fetchone() is not None
+
+    def delete(self, hash: str, entry_type: str) -> bool:
+        """Delete a cache entry.
+
+        Args:
+            hash: Unique identifier for the entry.
+            entry_type: Type of entry to delete.
+
+        Returns:
+            True if entry was deleted, False if it didn't exist.
+        """
+        cursor = self.conn.execute(
+            "DELETE FROM cache_entries WHERE hash = ? AND entry_type = ?",
+            (hash, entry_type),
+        )
+        self.conn.commit()
+        return cursor.rowcount > 0
+
+    # ========================================================================
+    # Encoder registration and auto-encoding operations
+    # ========================================================================
+
+    def register_encoder(self, entry_type: str, encoder: EntryEncoder) -> None:
+        """Register an encoder for a specific entry type.
+
+        Once registered, `put_data()` and `get_data()` will automatically
+        encode/decode entries of this type using the registered encoder.
+
+        Args:
+            entry_type: Type identifier (e.g. 'llm', 'json', 'score').
+            encoder: EntryEncoder instance for this type.
+
+        Example:
+            >>> from causaliq_knowledge.cache.encoders import JsonEncoder
+            >>> with TokenCache(":memory:") as cache:
+            ...     cache.register_encoder("json", JsonEncoder())
+            ...     cache.put_data("key1", "json", {"msg": "hello"})
+        """
+        self._encoders[entry_type] = encoder
+
+    def get_encoder(self, entry_type: str) -> EntryEncoder | None:
+        """Get the registered encoder for an entry type.
+
+        Args:
+            entry_type: Type identifier to look up.
+
+        Returns:
+            The registered encoder, or None if not registered.
+        """
+        return self._encoders.get(entry_type)
+
+    def has_encoder(self, entry_type: str) -> bool:
+        """Check if an encoder is registered for an entry type.
+
+        Args:
+            entry_type: Type identifier to check.
+
+        Returns:
+            True if encoder is registered, False otherwise.
+        """
+        return entry_type in self._encoders
+
+    def put_data(
+        self,
+        hash: str,
+        entry_type: str,
+        data: Any,
+        metadata: Any | None = None,
+    ) -> None:
+        """Store data using the registered encoder for the entry type.
+
+        This method automatically encodes the data using the encoder
+        registered for the given entry_type. Use `put()` for raw bytes.
+
+        Args:
+            hash: Unique identifier for the entry.
+            entry_type: Type of entry (must have registered encoder).
+            data: Data to encode and store.
+            metadata: Optional metadata to encode and store.
+
+        Raises:
+            KeyError: If no encoder is registered for entry_type.
+
+        Example:
+            >>> with TokenCache(":memory:") as cache:
+            ...     cache.register_encoder("json", JsonEncoder())
+            ...     cache.put_data("abc", "json", {"key": "value"})
+        """
+        encoder = self._encoders[entry_type]
+        blob = encoder.encode(data, self)
+        meta_blob = (
+            encoder.encode(metadata, self) if metadata is not None else None
+        )
+        self.put(hash, entry_type, blob, meta_blob)
+
+    def get_data(self, hash: str, entry_type: str) -> Any | None:
+        """Retrieve and decode data using the registered encoder.
+
+        This method automatically decodes the data using the encoder
+        registered for the given entry_type. Use `get()` for raw bytes.
+
+        Args:
+            hash: Unique identifier for the entry.
+            entry_type: Type of entry (must have registered encoder).
+
+        Returns:
+            Decoded data if found, None otherwise.
+
+        Raises:
+            KeyError: If no encoder is registered for entry_type.
+
+        Example:
+            >>> with TokenCache(":memory:") as cache:
+            ...     cache.register_encoder("json", JsonEncoder())
+            ...     cache.put_data("abc", "json", {"key": "value"})
+            ...     data = cache.get_data("abc", "json")
+        """
+        blob = self.get(hash, entry_type)
+        if blob is None:
+            return None
+        encoder = self._encoders[entry_type]
+        return encoder.decode(blob, self)
+
+    def get_data_with_metadata(
+        self, hash: str, entry_type: str
+    ) -> tuple[Any, Any | None] | None:
+        """Retrieve and decode data with metadata using registered encoder.
+
+        Args:
+            hash: Unique identifier for the entry.
+            entry_type: Type of entry (must have registered encoder).
+
+        Returns:
+            Tuple of (decoded_data, decoded_metadata) if found, None otherwise.
+            metadata may be None if not stored.
+
+        Raises:
+            KeyError: If no encoder is registered for entry_type.
+        """
+        result = self.get_with_metadata(hash, entry_type)
+        if result is None:
+            return None
+        data_blob, meta_blob = result
+        encoder = self._encoders[entry_type]
+        decoded_data = encoder.decode(data_blob, self)
+        decoded_meta = encoder.decode(meta_blob, self) if meta_blob else None
+        return (decoded_data, decoded_meta)
+
+    # ========================================================================
+    # Import/Export operations
+    # ========================================================================
+
+    def export_entries(
+        self,
+        output_dir: Path,
+        entry_type: str,
+        fmt: str | None = None,
+    ) -> int:
+        """Export cache entries to human-readable files.
+
+        Each entry is exported to a separate file named `{hash}.{ext}` where
+        ext is determined by the format or encoder's default_export_format.
+
+        Args:
+            output_dir: Directory to write exported files to. Created if
+                it doesn't exist.
+            entry_type: Type of entries to export (must have registered
+                encoder).
+            fmt: Export format (e.g. 'json', 'yaml'). If None, uses the
+                encoder's default_export_format.
+
+        Returns:
+            Number of entries exported.
+
+        Raises:
+            KeyError: If no encoder is registered for entry_type.
+
+        Example:
+            >>> from pathlib import Path
+            >>> from causaliq_knowledge.cache import TokenCache
+            >>> from causaliq_knowledge.cache.encoders import JsonEncoder
+            >>> with TokenCache(":memory:") as cache:
+            ...     cache.register_encoder("json", JsonEncoder())
+            ...     cache.put_data("abc123", "json", {"key": "value"})
+            ...     count = cache.export_entries(Path("./export"), "json")
+            ...     # Creates ./export/abc123.json
+        """
+        encoder = self._encoders[entry_type]
+        ext = fmt or encoder.default_export_format
+
+        # Create output directory if needed
+        output_dir.mkdir(parents=True, exist_ok=True)
+
+        # Query all entries of this type
+        cursor = self.conn.execute(
+            "SELECT hash, data FROM cache_entries WHERE entry_type = ?",
+            (entry_type,),
+        )
+
+        count = 0
+        for hash_val, blob in cursor:
+            # Decode the blob to get original data
+            data = encoder.decode(blob, self)
+            # Export to file using encoder's export method
+            file_path = output_dir / f"{hash_val}.{ext}"
+            encoder.export(data, file_path)
+            count += 1
+
+        return count
+
+    def import_entries(
+        self,
+        input_dir: Path,
+        entry_type: str,
+    ) -> int:
+        """Import human-readable files into the cache.
+
+        Each file is imported with its stem (filename without extension)
+        used as the cache hash. The encoder's import_() method reads the
+        file and the data is encoded before storage.
+
+        Args:
+            input_dir: Directory containing files to import.
+            entry_type: Type to assign to imported entries (must have
+                registered encoder).
+
+        Returns:
+            Number of entries imported.
+
+        Raises:
+            KeyError: If no encoder is registered for entry_type.
+            FileNotFoundError: If input_dir doesn't exist.
+
+        Example:
+            >>> from pathlib import Path
+            >>> from causaliq_knowledge.cache import TokenCache
+            >>> from causaliq_knowledge.cache.encoders import JsonEncoder
+            >>> with TokenCache(":memory:") as cache:
+            ...     cache.register_encoder("json", JsonEncoder())
+            ...     count = cache.import_entries(Path("./import"), "json")
+            ...     # Imports all files from ./import as "json" entries
+        """
+        encoder = self._encoders[entry_type]
+
+        if not input_dir.exists():
+            raise FileNotFoundError(f"Input directory not found: {input_dir}")
+
+        count = 0
+        for file_path in input_dir.iterdir():
+            if file_path.is_file():
+                # Use filename (without extension) as hash
+                hash_val = file_path.stem
+                # Import data using encoder
+                data = encoder.import_(file_path)
+                # Encode and store
+                self.put_data(hash_val, entry_type, data)
+                count += 1
+
+        return count

causaliq_knowledge/cli/__init__.py

@@ -0,0 +1,15 @@
+"""Command-line interface for causaliq-knowledge.
+
+This package provides the CLI implementation split into logical modules:
+
+- main: Core CLI entry point and query command
+- cache: Cache management commands (stats, export, import)
+- generate: Graph generation commands
+- models: Model listing command
+"""
+
+from __future__ import annotations
+
+from causaliq_knowledge.cli.main import cli, main
+
+__all__ = ["cli", "main"]