cars 1.0.0rc2__cp312-cp312-win_amd64.whl

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  1. cars/__init__.py +86 -0
  2. cars/applications/__init__.py +40 -0
  3. cars/applications/application.py +117 -0
  4. cars/applications/application_constants.py +29 -0
  5. cars/applications/application_template.py +146 -0
  6. cars/applications/auxiliary_filling/__init__.py +29 -0
  7. cars/applications/auxiliary_filling/abstract_auxiliary_filling_app.py +105 -0
  8. cars/applications/auxiliary_filling/auxiliary_filling_algo.py +475 -0
  9. cars/applications/auxiliary_filling/auxiliary_filling_from_sensors_app.py +632 -0
  10. cars/applications/auxiliary_filling/auxiliary_filling_wrappers.py +90 -0
  11. cars/applications/dem_generation/__init__.py +30 -0
  12. cars/applications/dem_generation/abstract_dem_generation_app.py +116 -0
  13. cars/applications/dem_generation/bulldozer_config/base_config.yaml +42 -0
  14. cars/applications/dem_generation/bulldozer_dem_app.py +641 -0
  15. cars/applications/dem_generation/bulldozer_memory.py +55 -0
  16. cars/applications/dem_generation/dem_generation_algo.py +107 -0
  17. cars/applications/dem_generation/dem_generation_constants.py +32 -0
  18. cars/applications/dem_generation/dem_generation_wrappers.py +323 -0
  19. cars/applications/dense_match_filling/__init__.py +30 -0
  20. cars/applications/dense_match_filling/abstract_dense_match_filling_app.py +242 -0
  21. cars/applications/dense_match_filling/fill_disp_algo.py +113 -0
  22. cars/applications/dense_match_filling/fill_disp_constants.py +39 -0
  23. cars/applications/dense_match_filling/fill_disp_wrappers.py +83 -0
  24. cars/applications/dense_match_filling/zero_padding_app.py +302 -0
  25. cars/applications/dense_matching/__init__.py +30 -0
  26. cars/applications/dense_matching/abstract_dense_matching_app.py +261 -0
  27. cars/applications/dense_matching/census_mccnn_sgm_app.py +1461 -0
  28. cars/applications/dense_matching/cpp/__init__.py +0 -0
  29. cars/applications/dense_matching/cpp/dense_matching_cpp.cp312-win_amd64.dll.a +0 -0
  30. cars/applications/dense_matching/cpp/dense_matching_cpp.cp312-win_amd64.pyd +0 -0
  31. cars/applications/dense_matching/cpp/dense_matching_cpp.py +94 -0
  32. cars/applications/dense_matching/cpp/includes/dense_matching.hpp +58 -0
  33. cars/applications/dense_matching/cpp/meson.build +9 -0
  34. cars/applications/dense_matching/cpp/src/bindings.cpp +13 -0
  35. cars/applications/dense_matching/cpp/src/dense_matching.cpp +207 -0
  36. cars/applications/dense_matching/dense_matching_algo.py +401 -0
  37. cars/applications/dense_matching/dense_matching_constants.py +89 -0
  38. cars/applications/dense_matching/dense_matching_wrappers.py +951 -0
  39. cars/applications/dense_matching/disparity_grid_algo.py +597 -0
  40. cars/applications/dense_matching/loaders/__init__.py +23 -0
  41. cars/applications/dense_matching/loaders/config_census_sgm_default.json +31 -0
  42. cars/applications/dense_matching/loaders/config_census_sgm_homogeneous.json +30 -0
  43. cars/applications/dense_matching/loaders/config_census_sgm_mountain_and_vegetation.json +30 -0
  44. cars/applications/dense_matching/loaders/config_census_sgm_shadow.json +30 -0
  45. cars/applications/dense_matching/loaders/config_census_sgm_sparse.json +36 -0
  46. cars/applications/dense_matching/loaders/config_census_sgm_urban.json +30 -0
  47. cars/applications/dense_matching/loaders/config_mapping.json +13 -0
  48. cars/applications/dense_matching/loaders/config_mccnn.json +28 -0
  49. cars/applications/dense_matching/loaders/global_land_cover_map.tif +0 -0
  50. cars/applications/dense_matching/loaders/pandora_loader.py +593 -0
  51. cars/applications/dsm_filling/__init__.py +32 -0
  52. cars/applications/dsm_filling/abstract_dsm_filling_app.py +101 -0
  53. cars/applications/dsm_filling/border_interpolation_app.py +278 -0
  54. cars/applications/dsm_filling/bulldozer_config/base_config.yaml +44 -0
  55. cars/applications/dsm_filling/bulldozer_filling_app.py +288 -0
  56. cars/applications/dsm_filling/exogenous_filling_app.py +341 -0
  57. cars/applications/dsm_merging/__init__.py +28 -0
  58. cars/applications/dsm_merging/abstract_dsm_merging_app.py +101 -0
  59. cars/applications/dsm_merging/weighted_fusion_app.py +639 -0
  60. cars/applications/grid_correction/__init__.py +30 -0
  61. cars/applications/grid_correction/abstract_grid_correction_app.py +103 -0
  62. cars/applications/grid_correction/grid_correction_app.py +557 -0
  63. cars/applications/grid_generation/__init__.py +30 -0
  64. cars/applications/grid_generation/abstract_grid_generation_app.py +142 -0
  65. cars/applications/grid_generation/epipolar_grid_generation_app.py +327 -0
  66. cars/applications/grid_generation/grid_generation_algo.py +388 -0
  67. cars/applications/grid_generation/grid_generation_constants.py +46 -0
  68. cars/applications/grid_generation/transform_grid.py +88 -0
  69. cars/applications/ground_truth_reprojection/__init__.py +30 -0
  70. cars/applications/ground_truth_reprojection/abstract_ground_truth_reprojection_app.py +137 -0
  71. cars/applications/ground_truth_reprojection/direct_localization_app.py +629 -0
  72. cars/applications/ground_truth_reprojection/ground_truth_reprojection_algo.py +275 -0
  73. cars/applications/point_cloud_outlier_removal/__init__.py +30 -0
  74. cars/applications/point_cloud_outlier_removal/abstract_outlier_removal_app.py +385 -0
  75. cars/applications/point_cloud_outlier_removal/outlier_removal_algo.py +392 -0
  76. cars/applications/point_cloud_outlier_removal/outlier_removal_constants.py +43 -0
  77. cars/applications/point_cloud_outlier_removal/small_components_app.py +522 -0
  78. cars/applications/point_cloud_outlier_removal/statistical_app.py +528 -0
  79. cars/applications/rasterization/__init__.py +30 -0
  80. cars/applications/rasterization/abstract_pc_rasterization_app.py +183 -0
  81. cars/applications/rasterization/rasterization_algo.py +534 -0
  82. cars/applications/rasterization/rasterization_constants.py +38 -0
  83. cars/applications/rasterization/rasterization_wrappers.py +639 -0
  84. cars/applications/rasterization/simple_gaussian_app.py +1152 -0
  85. cars/applications/resampling/__init__.py +28 -0
  86. cars/applications/resampling/abstract_resampling_app.py +187 -0
  87. cars/applications/resampling/bicubic_resampling_app.py +760 -0
  88. cars/applications/resampling/resampling_algo.py +590 -0
  89. cars/applications/resampling/resampling_constants.py +36 -0
  90. cars/applications/resampling/resampling_wrappers.py +309 -0
  91. cars/applications/sensors_subsampling/__init__.py +32 -0
  92. cars/applications/sensors_subsampling/abstract_subsampling_app.py +109 -0
  93. cars/applications/sensors_subsampling/rasterio_subsampling_app.py +420 -0
  94. cars/applications/sensors_subsampling/subsampling_algo.py +108 -0
  95. cars/applications/sparse_matching/__init__.py +30 -0
  96. cars/applications/sparse_matching/abstract_sparse_matching_app.py +599 -0
  97. cars/applications/sparse_matching/sift_app.py +724 -0
  98. cars/applications/sparse_matching/sparse_matching_algo.py +360 -0
  99. cars/applications/sparse_matching/sparse_matching_constants.py +66 -0
  100. cars/applications/sparse_matching/sparse_matching_wrappers.py +282 -0
  101. cars/applications/triangulation/__init__.py +32 -0
  102. cars/applications/triangulation/abstract_triangulation_app.py +227 -0
  103. cars/applications/triangulation/line_of_sight_intersection_app.py +1243 -0
  104. cars/applications/triangulation/pc_transform.py +552 -0
  105. cars/applications/triangulation/triangulation_algo.py +371 -0
  106. cars/applications/triangulation/triangulation_constants.py +38 -0
  107. cars/applications/triangulation/triangulation_wrappers.py +259 -0
  108. cars/bundleadjustment.py +750 -0
  109. cars/cars.py +179 -0
  110. cars/conf/__init__.py +23 -0
  111. cars/conf/geoid/egm96.grd +0 -0
  112. cars/conf/geoid/egm96.grd.hdr +15 -0
  113. cars/conf/input_parameters.py +156 -0
  114. cars/conf/mask_cst.py +35 -0
  115. cars/core/__init__.py +23 -0
  116. cars/core/cars_logging.py +402 -0
  117. cars/core/constants.py +191 -0
  118. cars/core/constants_disparity.py +50 -0
  119. cars/core/datasets.py +140 -0
  120. cars/core/geometry/__init__.py +27 -0
  121. cars/core/geometry/abstract_geometry.py +1119 -0
  122. cars/core/geometry/shareloc_geometry.py +598 -0
  123. cars/core/inputs.py +568 -0
  124. cars/core/outputs.py +176 -0
  125. cars/core/preprocessing.py +722 -0
  126. cars/core/projection.py +843 -0
  127. cars/core/roi_tools.py +215 -0
  128. cars/core/tiling.py +774 -0
  129. cars/core/utils.py +164 -0
  130. cars/data_structures/__init__.py +23 -0
  131. cars/data_structures/cars_dataset.py +1544 -0
  132. cars/data_structures/cars_dict.py +74 -0
  133. cars/data_structures/corresponding_tiles_tools.py +186 -0
  134. cars/data_structures/dataframe_converter.py +185 -0
  135. cars/data_structures/format_transformation.py +297 -0
  136. cars/devibrate.py +689 -0
  137. cars/extractroi.py +264 -0
  138. cars/orchestrator/__init__.py +23 -0
  139. cars/orchestrator/achievement_tracker.py +125 -0
  140. cars/orchestrator/cluster/__init__.py +37 -0
  141. cars/orchestrator/cluster/abstract_cluster.py +250 -0
  142. cars/orchestrator/cluster/abstract_dask_cluster.py +381 -0
  143. cars/orchestrator/cluster/dask_cluster_tools.py +103 -0
  144. cars/orchestrator/cluster/dask_config/README.md +94 -0
  145. cars/orchestrator/cluster/dask_config/dask.yaml +21 -0
  146. cars/orchestrator/cluster/dask_config/distributed.yaml +70 -0
  147. cars/orchestrator/cluster/dask_config/jobqueue.yaml +26 -0
  148. cars/orchestrator/cluster/dask_config/reference_confs/dask-schema.yaml +137 -0
  149. cars/orchestrator/cluster/dask_config/reference_confs/dask.yaml +26 -0
  150. cars/orchestrator/cluster/dask_config/reference_confs/distributed-schema.yaml +1009 -0
  151. cars/orchestrator/cluster/dask_config/reference_confs/distributed.yaml +273 -0
  152. cars/orchestrator/cluster/dask_config/reference_confs/jobqueue.yaml +212 -0
  153. cars/orchestrator/cluster/dask_jobqueue_utils.py +204 -0
  154. cars/orchestrator/cluster/local_dask_cluster.py +116 -0
  155. cars/orchestrator/cluster/log_wrapper.py +728 -0
  156. cars/orchestrator/cluster/mp_cluster/__init__.py +27 -0
  157. cars/orchestrator/cluster/mp_cluster/mp_factorizer.py +212 -0
  158. cars/orchestrator/cluster/mp_cluster/mp_objects.py +535 -0
  159. cars/orchestrator/cluster/mp_cluster/mp_tools.py +93 -0
  160. cars/orchestrator/cluster/mp_cluster/mp_wrapper.py +505 -0
  161. cars/orchestrator/cluster/mp_cluster/multiprocessing_cluster.py +986 -0
  162. cars/orchestrator/cluster/mp_cluster/multiprocessing_profiler.py +399 -0
  163. cars/orchestrator/cluster/pbs_dask_cluster.py +207 -0
  164. cars/orchestrator/cluster/sequential_cluster.py +139 -0
  165. cars/orchestrator/cluster/slurm_dask_cluster.py +234 -0
  166. cars/orchestrator/memory_tools.py +47 -0
  167. cars/orchestrator/orchestrator.py +755 -0
  168. cars/orchestrator/orchestrator_constants.py +29 -0
  169. cars/orchestrator/registry/__init__.py +23 -0
  170. cars/orchestrator/registry/abstract_registry.py +143 -0
  171. cars/orchestrator/registry/compute_registry.py +106 -0
  172. cars/orchestrator/registry/id_generator.py +116 -0
  173. cars/orchestrator/registry/replacer_registry.py +213 -0
  174. cars/orchestrator/registry/saver_registry.py +363 -0
  175. cars/orchestrator/registry/unseen_registry.py +118 -0
  176. cars/orchestrator/tiles_profiler.py +279 -0
  177. cars/pipelines/__init__.py +26 -0
  178. cars/pipelines/conf_resolution/conf_final_resolution.yaml +5 -0
  179. cars/pipelines/conf_resolution/conf_first_resolution.yaml +4 -0
  180. cars/pipelines/conf_resolution/conf_intermediate_resolution.yaml +2 -0
  181. cars/pipelines/default/__init__.py +26 -0
  182. cars/pipelines/default/default_pipeline.py +1088 -0
  183. cars/pipelines/filling/__init__.py +26 -0
  184. cars/pipelines/filling/filling.py +981 -0
  185. cars/pipelines/formatting/__init__.py +26 -0
  186. cars/pipelines/formatting/formatting.py +186 -0
  187. cars/pipelines/merging/__init__.py +26 -0
  188. cars/pipelines/merging/merging.py +439 -0
  189. cars/pipelines/parameters/__init__.py +0 -0
  190. cars/pipelines/parameters/advanced_parameters.py +256 -0
  191. cars/pipelines/parameters/advanced_parameters_constants.py +68 -0
  192. cars/pipelines/parameters/application_parameters.py +72 -0
  193. cars/pipelines/parameters/depth_map_inputs.py +0 -0
  194. cars/pipelines/parameters/dsm_inputs.py +349 -0
  195. cars/pipelines/parameters/dsm_inputs_constants.py +25 -0
  196. cars/pipelines/parameters/output_constants.py +52 -0
  197. cars/pipelines/parameters/output_parameters.py +438 -0
  198. cars/pipelines/parameters/sensor_inputs.py +859 -0
  199. cars/pipelines/parameters/sensor_inputs_constants.py +51 -0
  200. cars/pipelines/parameters/sensor_loaders/__init__.py +29 -0
  201. cars/pipelines/parameters/sensor_loaders/basic_classif_loader.py +86 -0
  202. cars/pipelines/parameters/sensor_loaders/basic_image_loader.py +98 -0
  203. cars/pipelines/parameters/sensor_loaders/pivot_classif_loader.py +90 -0
  204. cars/pipelines/parameters/sensor_loaders/pivot_image_loader.py +105 -0
  205. cars/pipelines/parameters/sensor_loaders/sensor_loader.py +93 -0
  206. cars/pipelines/parameters/sensor_loaders/sensor_loader_template.py +71 -0
  207. cars/pipelines/parameters/sensor_loaders/slurp_classif_loader.py +86 -0
  208. cars/pipelines/pipeline.py +119 -0
  209. cars/pipelines/pipeline_constants.py +38 -0
  210. cars/pipelines/pipeline_template.py +135 -0
  211. cars/pipelines/subsampling/__init__.py +26 -0
  212. cars/pipelines/subsampling/subsampling.py +358 -0
  213. cars/pipelines/surface_modeling/__init__.py +26 -0
  214. cars/pipelines/surface_modeling/surface_modeling.py +2098 -0
  215. cars/pipelines/tie_points/__init__.py +26 -0
  216. cars/pipelines/tie_points/tie_points.py +536 -0
  217. cars/starter.py +167 -0
  218. cars-1.0.0rc2.dist-info/DELVEWHEEL +2 -0
  219. cars-1.0.0rc2.dist-info/METADATA +289 -0
  220. cars-1.0.0rc2.dist-info/RECORD +225 -0
  221. cars-1.0.0rc2.dist-info/WHEEL +4 -0
  222. cars-1.0.0rc2.dist-info/entry_points.txt +8 -0
  223. cars.libs/libgcc_s_seh-1-b2494fcbd4d80cf2c98fdd5261f6d850.dll +0 -0
  224. cars.libs/libstdc++-6-e9b0d12ae0e9555bbae55e8dfd08c3f7.dll +0 -0
  225. cars.libs/libwinpthread-1-7882d1b093714ccdfaf4e0789a817792.dll +0 -0
cars/core/roi_tools.py ADDED
@@ -0,0 +1,215 @@
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+ #!/usr/bin/env python
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+ # coding: utf8
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+ #
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+ # Copyright (c) 2020 Centre National d'Etudes Spatiales (CNES).
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+ #
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+ # This file is part of CARS
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+ # (see https://github.com/CNES/cars).
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+ #
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+ # Licensed under the Apache License, Version 2.0 (the "License");
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+ # you may not use this file except in compliance with the License.
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+ # You may obtain a copy of the License at
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+ #
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+ # http://www.apache.org/licenses/LICENSE-2.0
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+ #
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+ # Unless required by applicable law or agreed to in writing, software
16
+ # distributed under the License is distributed on an "AS IS" BASIS,
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+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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+ # See the License for the specific language governing permissions and
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+ # limitations under the License.
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+ #
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+ """
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+ This module contains tools for ROI
23
+ """
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+
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+ import logging
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+ import os
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+ from typing import List, Tuple
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+
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+ import numpy as np
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+ from shapely.geometry import LineString, MultiPolygon, Point, Polygon, shape
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+
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+ # CARS imports
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+ from cars.core import inputs, projection
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+
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+
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+ def generate_roi_poly_from_inputs(roi):
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+ """
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+ Generate ROI polygon from roi inputs
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+
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+ :param roi: roi file path or Geojson
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+ :type roi: str Or GeoJson Dict
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+
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+ :return polygon, polygon epsg
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+ :rtype: Tuple(Shapely Polygon, int)
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+
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+ """
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+
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+ roi_poly, roi_epsg = None, None
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+ # Transform ROI if from shapefile
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+ if isinstance(roi, str):
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+ # Transform file to shapely polygon
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+
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+ roi_poly, roi_epsg = parse_roi_file(roi)
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+ elif isinstance(roi, dict):
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+ # Transform geosjon to shapely polygon
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+ roi_poly, roi_epsg = geojson_to_shapely(roi)
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+
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+ # Resample polygon to a 100m resolution
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+ if roi_poly is not None:
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+ roi_poly = resample_polygon(roi_poly, roi_epsg, resolution=100)
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+
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+ return roi_poly, roi_epsg
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+
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+
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+ def resample_polygon(roi_poly, roi_epsg, resolution=100):
66
+ """
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+ Resample input polygon to given resolution.
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+ No interpolation is applied.
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+
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+ :param roi_poly: input polygon or multipolygon
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+ :type roi_poly: Shapely Polygon or MultiPolygon
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+ :param roi_epsg: roi epsg
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+ :type roi_epsg: int
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+ :param resolution: resolution in meter to resample to
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+ :type resolution: float
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+
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+ :return: resampled polygon
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+ :rtype: Shapely Polygon or MultiPolygon
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+
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+ """
81
+ epsg_meter = 4978
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+
83
+ if roi_poly.geom_type == "Polygon":
84
+ list_poly = [roi_poly]
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+ elif roi_poly.geom_type == "MultiPolygon":
86
+ list_poly = list(roi_poly.geoms)
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+ else:
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+ raise TypeError(
89
+ "{} type is not supported for ROI".format(roi_poly.geom_type)
90
+ )
91
+
92
+ new_list_poly = []
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+ for poly in list_poly:
94
+ new_list_points = []
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+
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+ points = poly.boundary.coords
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+
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+ linestrings = [
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+ LineString(points[k : k + 2]) for k in range(len(points) - 1)
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+ ]
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+ for line in linestrings:
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+ # Get distance in meter of line
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+ first, last = line.coords[0], line.coords[1]
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+ in_cloud = np.array([[first[0], first[1]], [last[0], last[1]]])
105
+ out_cloud = projection.point_cloud_conversion(
106
+ in_cloud, roi_epsg, epsg_meter
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+ )
108
+ new_first = Point(out_cloud[0, 0], out_cloud[0, 1])
109
+ new_last = Point(out_cloud[1, 0], out_cloud[1, 1])
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+ line_distance = new_first.distance(new_last)
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+
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+ # Compute number of point to generate
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+ nb_points = int(line_distance / resolution) + 1
114
+
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+ # Generate new points
116
+ for ind in list(np.linspace(0, 1, nb_points, endpoint=True)):
117
+ new_list_points.append(line.interpolate(ind, normalized=True))
118
+
119
+ new_list_poly.append(Polygon(new_list_points))
120
+
121
+ if roi_poly.geom_type == "Polygon":
122
+ return new_list_poly[0]
123
+ return MultiPolygon(new_list_poly)
124
+
125
+
126
+ def geojson_to_shapely(geojson_dict: dict):
127
+ """
128
+ Transform Geojson dict to Shapely polygon
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+
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+ :param geojson_dict: geojson
131
+ :type geojson_dict: dict
132
+
133
+ :return: shapely polygon
134
+ :rtype: Shapely Polygon
135
+
136
+ """
137
+
138
+ features = geojson_dict["features"]
139
+ if len(features) > 1:
140
+ logging.info(
141
+ "Multi features files are not supported, "
142
+ "the first feature of input geojson will be used"
143
+ )
144
+
145
+ roi_poly = shape(features[0]["geometry"]).buffer(0)
146
+
147
+ roi_epsg = 4326
148
+
149
+ if "crs" in geojson_dict:
150
+ if "properties" in geojson_dict["crs"]:
151
+ if "name" in geojson_dict["crs"]["properties"]:
152
+ geo_json_epsg = geojson_dict["crs"]["properties"]["name"]
153
+ # format: EPSG:4326
154
+ if "EPSG:" not in geo_json_epsg:
155
+ logging.error("ROI EPSG could not be read, wrong format")
156
+ else:
157
+ roi_epsg = int(geo_json_epsg.replace("EPSG:", ""))
158
+
159
+ return roi_poly, roi_epsg
160
+
161
+
162
+ def parse_roi_file(arg_roi_file: str) -> Tuple[List[float], int]:
163
+ """
164
+ Parse ROI file argument and generate bounding box
165
+
166
+
167
+ :param arg_roi_file : ROI file argument
168
+ :return: ROI Polygon + ROI epsg
169
+ :rtype: Shapely polygon, int
170
+ """
171
+
172
+ # Declare output
173
+ roi_poly, roi_epsg = None, None
174
+
175
+ _, extension = os.path.splitext(arg_roi_file)
176
+
177
+ # test file existence
178
+ if not os.path.exists(arg_roi_file):
179
+ logging.error("File {} does not exist".format(arg_roi_file))
180
+ else:
181
+ # if it is a vector file
182
+ if extension in [".gpkg", ".shp", ".kml"]:
183
+ roi_poly, roi_epsg = inputs.read_vector(arg_roi_file)
184
+
185
+ else:
186
+ logging.error(
187
+ "ROI file {} has an unsupported format".format(arg_roi_file)
188
+ )
189
+ raise AttributeError(
190
+ "ROI file {} has an unsupported format".format(arg_roi_file)
191
+ )
192
+
193
+ return roi_poly, roi_epsg
194
+
195
+
196
+ def bounds_to_poly(bounds):
197
+ """
198
+ Convert bounds to polygon
199
+
200
+ :param bounds: bounds: [xmin, ymin, xmax, ymax]
201
+ :type: bounds: list
202
+
203
+ :return polygon
204
+ """
205
+
206
+ poly = Polygon(
207
+ [
208
+ [bounds[0], bounds[1]],
209
+ [bounds[0], bounds[3]],
210
+ [bounds[2], bounds[3]],
211
+ [bounds[2], bounds[1]],
212
+ [bounds[0], bounds[1]],
213
+ ]
214
+ )
215
+ return poly