carrot-transform 0.3.2__py3-none-any.whl → 0.3.3__py3-none-any.whl

carrot_transform-0.3.3.dist-info/METADATA

@@ -0,0 +1,48 @@
+Metadata-Version: 2.3
+Name: carrot_transform
+Version: 0.3.3
+Summary: 
+Author: anwarfg
+Author-email: 913028+anwarfg@users.noreply.github.com
+Requires-Python: >=3.10,<4.0
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Requires-Dist: click (>=8.1.7,<9.0.0)
+Requires-Dist: jinja2 (>=3.1.4,<4.0.0)
+Requires-Dist: pandas (>=2.2.3,<3.0.0)
+Description-Content-Type: text/markdown
+
+<p align="center">
+  <a href="https://carrot.ac.uk/" target="_blank">
+  <picture>
+    <source media="(prefers-color-scheme: dark)" srcset="/images/logo-dark.png">
+    <img alt="Carrot Logo" src="/images/logo-primary.png" width="280"/>
+  </picture>
+  </a>
+</p>
+<div align="center">
+  <strong>
+  <h2>Streamlined Data Mapping to OMOP</h2>
+  <a href="https://carrot.ac.uk/">Carrot Tranform</a> executes the conversion of the data to the OMOP CDM.<br />
+  </strong>
+</div>
+
+TODO:
+
+- Document carrot-transform
+- Add more comments in-code
+- Handle capture of ddl and json config via the command-line as optional args
+
+Reduction in complexity over the original CaRROT-CDM version for the Transform part of _ETL_ - In practice _Extract_ is always
+performed by Data Partners, _Load_ by database bulk-load software.
+
+Statistics
+
+External libraries imported (approximate)
+
+carrot-cdm 61
+carrot-transform 12
+

{carrot_transform-0.3.2.dist-info → carrot_transform-0.3.3.dist-info}/RECORD

@@ -5,15 +5,13 @@ carrottransform/cli/command.py,sha256=xYTaJsVZyRYv0CzUwrh7ZPK8hhGyC3MDfvVYxHcXYS
 carrottransform/cli/subcommands/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 carrottransform/cli/subcommands/run.py,sha256=3z5cRG4ekyPOP5tvjZOyHUxbclKfBr_Z0tQRRoKj73E,20651
 carrottransform/config/OMOPCDM_postgresql_5.3_ddl.sql,sha256=fXrPfdL3IzU5ux55ogsQKjjd-c1KzdP_N2A_JjlY3gk,18084
-carrottransform/config/omop.json,sha256=WiA1XeEd9K3dH3DRN1uJAzjzQpslGlmL-AxJ9z1PDQI,1687
+carrottransform/config/omop.json,sha256=OT3jvfPjKhjsDnQcQw1OAEOHhQLoHXNxTj_MDwNbYqo,1934
 carrottransform/tools/__init__.py,sha256=b3JuCwgJVx0rqx5igB8hNNKO0ktlbQjHGHwy-vzpdo0,198
 carrottransform/tools/file_helpers.py,sha256=xlODDAUpsx0H4sweGZ81ttjJjNQGn2spNUa1Fndotw8,316
 carrottransform/tools/mappingrules.py,sha256=bV6tXHBwVeKAUgCwFTZE2-qTcxKtbs3zbJWedBSviVI,6567
 carrottransform/tools/metrics.py,sha256=LOzm80-YIVM9mvgvQXRpyArl2nSfSTTW9DikqJ5M2Yg,5700
 carrottransform/tools/omopcdm.py,sha256=ycyPGgUTUwui7MLxH8JXd-MyCRkG0xOfEoDhCXeogmQ,7623
-carrot_transform-0.3.2.dist-info/LICENSE,sha256=pqIiuuTs6Na-oFd10MMsZoZmdfhfUhHeOtQzgzSkcaw,1082
-carrot_transform-0.3.2.dist-info/METADATA,sha256=le7qI6Z6wL48uuAy0nwP_gsTnWVV-WbqjGBBvP_aOa4,868
-carrot_transform-0.3.2.dist-info/WHEEL,sha256=P9jw-gEje8ByB7_hXoICnHtVCrEwMQh-630tKvQWehc,91
-carrot_transform-0.3.2.dist-info/entry_points.txt,sha256=WSJqmgB8PEK8iMl3IFEMBYuyXtzHX5PaKbG13R54AH4,75
-carrot_transform-0.3.2.dist-info/top_level.txt,sha256=UXPSohnlYfzndis3fEcl6f-dg80qwrKdPjnnSsggEUs,16
-carrot_transform-0.3.2.dist-info/RECORD,,
+carrot_transform-0.3.3.dist-info/LICENSE,sha256=pqIiuuTs6Na-oFd10MMsZoZmdfhfUhHeOtQzgzSkcaw,1082
+carrot_transform-0.3.3.dist-info/METADATA,sha256=23mVHLHLXOqgXUFLoU7cSaqIr_yzl9mYf_zgZnteeoY,1474
+carrot_transform-0.3.3.dist-info/WHEEL,sha256=IYZQI976HJqqOpQU6PHkJ8fb3tMNBFjg-Cn-pwAbaFM,88
+carrot_transform-0.3.3.dist-info/RECORD,,

{carrot_transform-0.3.2.dist-info → carrot_transform-0.3.3.dist-info}/WHEEL

@@ -1,5 +1,4 @@
 Wheel-Version: 1.0
-Generator: setuptools (75.3.0)
+Generator: poetry-core 2.0.1
 Root-Is-Purelib: true
 Tag: py3-none-any
-

carrottransform/config/omop.json

@@ -26,6 +26,10 @@
     "visit_occurrence": {
 	    "visit_start_datetime": "visit_start_date", 
 	    "visit_end_datetime": "visit_end_date"
+    },
+    "device_exposure": {
+	    "device_exposure_start_datetime": "device_exposure_start_date", 
+	    "device_exposure_end_datetime": "device_exposure_end_date"
     }
   },
   "date_field_components": {
@@ -46,6 +50,7 @@
     "person": "person_id",
     "procedure_occurrence": "person_id",
     "specimen": "person_id",
+    "device_exposure": "person_id",
     "visit_occurrence": "person_id"
   },
   "auto_number_field": {
@@ -56,6 +61,7 @@
     "observation": "observation_id",
     "procedure_occurrence": "procedure_occurrence_id",
     "specimen": "specimen_id",
+    "device_exposure": "device_exposure_id",
     "visit_occurrence": "visit_occurrence_id"
   }
 }

carrot_transform-0.3.2.dist-info/METADATA

@@ -1,28 +0,0 @@
-Metadata-Version: 2.1
-Name: carrot-transform
-Version: 0.3.2
-Summary: Carrot simple transformer, input rules and data csv's, output OMOP
-Author-email: PD Appleby <pdappleby@gmail.com>
-Classifier: Programming Language :: Python :: 3
-Classifier: License :: OSI Approved :: MIT License
-Classifier: Operating System :: OS Independent
-Requires-Python: >=3.9
-Description-Content-Type: text/markdown
-License-File: LICENSE
-
-# carrot-transform
-
-TODO: 
-* Document carrot-transform 
-* Add more comments in-code
-* Handle capture of ddl and json config via the command-line as optional args
-
-Reduction in complexity over the original CaRROT-CDM version for the Transform part of *ETL* - In practice *Extract* is always 
-performed by Data Partners, *Load* by database bulk-load software.
-
-Statistics
-
-External libraries imported (approximate)
-
-carrot-cdm      61
-carrot-transform 12

carrot_transform-0.3.2.dist-info/entry_points.txt

@@ -1,2 +0,0 @@
-[console_scripts]
-carrot-transform = carrottransform.cli.command:transform

carrot_transform-0.3.2.dist-info/top_level.txt

@@ -1 +0,0 @@
-carrottransform