careamics 0.1.0rc3__py3-none-any.whl → 0.1.0rc4__py3-none-any.whl

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Files changed (27) hide show
  1. careamics/__init__.py +8 -6
  2. careamics/careamist.py +18 -18
  3. careamics/config/__init__.py +12 -8
  4. careamics/config/algorithm_model.py +5 -5
  5. careamics/config/configuration_example.py +89 -0
  6. careamics/config/configuration_factory.py +187 -50
  7. careamics/config/configuration_model.py +8 -7
  8. careamics/config/data_model.py +3 -3
  9. careamics/config/inference_model.py +1 -1
  10. careamics/config/support/supported_optimizers.py +3 -3
  11. careamics/config/training_model.py +1 -1
  12. careamics/config/transformations/n2v_manipulate_model.py +1 -1
  13. careamics/config/transformations/nd_flip_model.py +1 -1
  14. careamics/config/transformations/normalize_model.py +1 -1
  15. careamics/config/transformations/xy_random_rotate90_model.py +1 -1
  16. careamics/dataset/in_memory_dataset.py +3 -3
  17. careamics/dataset/iterable_dataset.py +3 -3
  18. careamics/lightning_datamodule.py +103 -25
  19. careamics/lightning_module.py +6 -6
  20. careamics/lightning_prediction_datamodule.py +44 -38
  21. careamics/model_io/bioimage/model_description.py +3 -3
  22. careamics/model_io/bmz_io.py +6 -6
  23. careamics/model_io/model_io_utils.py +4 -4
  24. {careamics-0.1.0rc3.dist-info → careamics-0.1.0rc4.dist-info}/METADATA +1 -1
  25. {careamics-0.1.0rc3.dist-info → careamics-0.1.0rc4.dist-info}/RECORD +27 -26
  26. {careamics-0.1.0rc3.dist-info → careamics-0.1.0rc4.dist-info}/WHEEL +0 -0
  27. {careamics-0.1.0rc3.dist-info → careamics-0.1.0rc4.dist-info}/licenses/LICENSE +0 -0
{careamics-0.1.0rc3.dist-info → careamics-0.1.0rc4.dist-info}/RECORD RENAMED
@@ -1,25 +1,26 @@
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- careamics/__init__.py,sha256=7Zfey0kcF5eSouzc0I1bnGg77wys7NyRy61s9BCU3Xs,676
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- careamics/careamist.py,sha256=44JhiyRsuPH_rmfoIdECpolp8bXnFBv3CUCm8pBb0zU,28336
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+ careamics/__init__.py,sha256=DkMGt4t9ua0gCgvZFEtb6eydvoxG976T0KUro8KnDNA,760
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+ careamics/careamist.py,sha256=Exr8-AV0KSqZUEUdpw8dSRa_jcrq7p97qon6HqXnRS8,28409
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  careamics/conftest.py,sha256=WR_iw4Eebfq6r_sY1No4GfB-_XG5JMkpxXpoorWy8Eg,658
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- careamics/lightning_datamodule.py,sha256=MA6qwvCAf-Umz8fwJJgGEsXX76yVa_8BFEo4nsMBYuQ,28552
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- careamics/lightning_module.py,sha256=nxReAzoWBZZy2E8JMsef72hIC_4WTh0kvvVf5sgpcYM,10159
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- careamics/lightning_prediction_datamodule.py,sha256=yzJcfvhlN8k6ylOrTO-Y_NLSeQNTHklqhhjFxffLyiA,15053
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+ careamics/lightning_datamodule.py,sha256=84dsyl4rv3nhr3T6yGbOQYkNT-joWJJRDtKHoC3GThY,31915
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+ careamics/lightning_module.py,sha256=FuqX21dNIMMqXsJTThv2Xkj3XV0gOimJipvJPQN823A,10174
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+ careamics/lightning_prediction_datamodule.py,sha256=7R8Qd677uSHnIg8TWlIPibKGHuU0tbgODDuMchIZL5I,15364
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  careamics/lightning_prediction_loop.py,sha256=EcUSgM2BHkWhjR4zN0NNf2M8xQF_I3aQ9qAFk0slYYw,4483
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  careamics/py.typed,sha256=esB4cHc6c07uVkGtqf8at7ttEnprwRxwk8obY8Qumq4,187
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  careamics/callbacks/__init__.py,sha256=spxJlDByD-6QtMl9vcIty8Wb0tyHaSTKTItozHenI44,204
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  careamics/callbacks/hyperparameters_callback.py,sha256=CdOtxazXi6YXH3Fq4AahqBQ3Ai64YpAMkd8gFnAnkjc,1258
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  careamics/callbacks/progress_bar_callback.py,sha256=ojeat3wwaqq7uEAVZBren71CZtNiEch1FR7o8FiaEPg,1868
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- careamics/config/__init__.py,sha256=V8oV-QxJAGtjZRcyMIeSPqONJvzXroRB_-pA_uDEr70,886
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- careamics/config/algorithm_model.py,sha256=sBUX80tdnzlvdUYlPJ9m4dUAL8GKu22BcrUfZT6jQoE,5727
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+ careamics/config/__init__.py,sha256=peYqbpE68rBgVp6kMRcfRkrcRhyeoNh6NEzJ-G-Ot4E,1020
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+ careamics/config/algorithm_model.py,sha256=7Y7-kr9Bc-cCOiavJ6vzahYTdlLZcLZo7FvKOPFZoWg,5732
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  careamics/config/callback_model.py,sha256=h4q5tbjpauL5gQ1joeRvJw8Bes1s7Lp2dvcoHnFozqY,3225
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- careamics/config/configuration_factory.py,sha256=AeqVtnj-lAwkhNS-SatU4naoN-Oy2ewBpq8e0FM443k,14610
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- careamics/config/configuration_model.py,sha256=KK7r_JIgGt07CoK-HCrS-sb2wHMC6M9zLZ9OeVLNGc0,18730
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- careamics/config/data_model.py,sha256=hPdpX08B2_woGRnwKU6IQtUbTQ_br5upNsAPjbbkX-g,16806
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- careamics/config/inference_model.py,sha256=-iLrXlJbjFaCoy9jX1YDb2Afvl7xRj3rSeTt-oblzSE,8126
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+ careamics/config/configuration_example.py,sha256=XmdMsl0Auq4G1tIm_XL9_gG-LWudVbXCFZAoy_RicqE,2605
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+ careamics/config/configuration_factory.py,sha256=4lafi6H5YLQhG-ByyONM06lDSO2OV34uhvwrDWW3eg0,18793
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+ careamics/config/configuration_model.py,sha256=dO32a2v7YXXBmqSUpUylb-_FQoHqWsXRS7zj19iwhMI,18754
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+ careamics/config/data_model.py,sha256=0Qn1PvNcVIevT2voolSULkvkPoQFeiBVu9mFUK9vE1c,16809
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+ careamics/config/inference_model.py,sha256=UI5UsE-2UUmhs5b0im9koztJkXulnXYbVFwOqt-tybY,8127
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  careamics/config/noise_models.py,sha256=1P6dXqqBhbVHT7EZ2hluO2aHKIywkAyl4BndrvtKRKU,4338
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  careamics/config/optimizer_models.py,sha256=Umu6O2qKv1o4ReWBuldAHmvF0u_DKS5eHCa7YdxvOaw,5266
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  careamics/config/tile_information.py,sha256=2bVLTvZfdjPOZVq7jYXVuAFLlPFmJ2DBiwtwm5n7K-U,2939
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- careamics/config/training_model.py,sha256=T0E0uu_u7dVQg5rZIynD-JhCVbKKzFO7EP-CboiFLsU,1557
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+ careamics/config/training_model.py,sha256=nAXZtqQsTmMIgQIPmGPpGQ_gYUatY_j-MK9B83joGAE,1558
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  careamics/config/architectures/__init__.py,sha256=CdnViydyTdQixus3uWHBIgbgxmu9t1_ADehqpjN_57U,444
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  careamics/config/architectures/architecture_model.py,sha256=EomNAhjuhu3uqEjzG6uvRclSQNVuGkcH_mt4R47yIHg,681
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  careamics/config/architectures/custom_model.py,sha256=2tMvr6XqFY8hY8Tfljba-kp1c61fDKaV4vylbg4AyUg,4473
@@ -37,21 +38,21 @@ careamics/config/support/supported_data.py,sha256=AvdoWVLLpX5jzozJGUqeo5EJVkb6Z_
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  careamics/config/support/supported_extraction_strategies.py,sha256=oVSVbFBrVMvvtHGtK5_e306ef3splJZHialoSQM_0zs,578
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  careamics/config/support/supported_loggers.py,sha256=slbpUZSMdRMCKNAQfnCxh7n1Sql2NFoH79cIoiuavcU,159
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  careamics/config/support/supported_losses.py,sha256=fu0SPPhubMVq3zXJk8G8Av9ojWNw62EKm7WnUmapuRs,502
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- careamics/config/support/supported_optimizers.py,sha256=iUjxE6Yh3KV6u42kfXDe83pt8MbFaS-rm1OO7zwFLf8,1333
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+ careamics/config/support/supported_optimizers.py,sha256=Y_Ns3DijRU9xUoY54AMm0VEeIx0ntS_4UkpyBKaSSl4,1337
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  careamics/config/support/supported_pixel_manipulations.py,sha256=0lZfCwL9bwPK5E8qzi7l9UGOq41U2fCH9KpxnDEpznc,360
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  careamics/config/support/supported_struct_axis.py,sha256=VzyKEVwNARtF9HviAmsHqAjyenHCRFR5UObks6s6R9Y,378
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  careamics/config/support/supported_transforms.py,sha256=7lF2ZdWC7Fa7ExemQ6JzM9s9RXM0_tsGWilmmq-MoMw,889
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  careamics/config/transformations/__init__.py,sha256=FnLBxNyJ0cTPf8e1dhtkhks5vu_z8Wi48aBjvAPDErk,357
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- careamics/config/transformations/n2v_manipulate_model.py,sha256=OjZ2GK02BhNPR2U1wXSUE71p-zwn6Y6PERLk_2tR0og,1835
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- careamics/config/transformations/nd_flip_model.py,sha256=7ah1Dxav_BKShH3MO1Nh7QQ5dNwGq4wqXwrEtZHvWCM,845
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- careamics/config/transformations/normalize_model.py,sha256=zl7yCfaEzF0G19L7BLPT3Ke0t9y5aXQOqWTc3doIIGo,789
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+ careamics/config/transformations/n2v_manipulate_model.py,sha256=qSY166kTIykLIfrTUBYYG8fbx3QOufzL7IXPAw85fx4,1853
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+ careamics/config/transformations/nd_flip_model.py,sha256=5ANbM4z-JDbc-Re2BtedzQFmS8Mc_iQkN-Dq2qxsK9A,856
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+ careamics/config/transformations/normalize_model.py,sha256=kIPFBM55-IePAkIQkSihz96gcbb1Yel6hCHcepCapFI,803
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  careamics/config/transformations/transform_model.py,sha256=HqCnZLr-K9d54CxK8M0UaXdPqnPYso5Wg1i2dK5dmBI,999
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- careamics/config/transformations/xy_random_rotate90_model.py,sha256=U0kIPWI4XU7KrDuVfyCHqq28TEqdp-KcHQDXuaH4uw8,775
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+ careamics/config/transformations/xy_random_rotate90_model.py,sha256=8sBGwMJzdLGmZrqC15ObZZNGpT9NpctzScV9LJ7zyuk,796
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  careamics/config/validators/__init__.py,sha256=iv0nVI0W7j9DxFPwh0DjRCzM9P8oLQn4Gwi5rfuFrrI,180
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  careamics/config/validators/validator_utils.py,sha256=81t79useG0ZfwZdodLfSl_799hBMriiFrohStRHl9nc,2623
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  careamics/dataset/__init__.py,sha256=cUcqy1Nxa5WhDQim6948r3i1kGQ-HijUqAACyyM7cuU,174
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- careamics/dataset/in_memory_dataset.py,sha256=5qoMpHOw-9Fhb3y6QTHGvIALCd-uvxgctREFF6WT79U,12209
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- careamics/dataset/iterable_dataset.py,sha256=P4-yjZYAA_baw2_tjcr5F2FskHjAEYCneyoVBflx9dY,15030
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+ careamics/dataset/in_memory_dataset.py,sha256=_rRvDvtL_Jg4W8sx7plYArr1lBQFFFUoR-WBqmaRGwQ,12213
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+ careamics/dataset/iterable_dataset.py,sha256=xqlt2M6k3UUO2VX37Tn4L4TAniZfgNhE2tnM8_S_ENo,15035
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  careamics/dataset/zarr_dataset.py,sha256=cpouzhaWUOkqAjjliJhrtfqVvZEMaq1d9V3LDoEvJQA,5644
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  careamics/dataset/dataset_utils/__init__.py,sha256=nt3IzCFa8JstXbheNrA5D_wlJe0PNFpABmBA3f_Jsj0,447
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  careamics/dataset/dataset_utils/dataset_utils.py,sha256=bKAUvLrnS-zxCpJ7H56clJ2pGB3jYYh7F20ZkG7bDIQ,2666
@@ -72,12 +73,12 @@ careamics/losses/losses.py,sha256=a-8NLw0R86r2XxcHh97D7Mnhtbn0c5VFjZLPfttKCCM,23
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  careamics/losses/noise_model_factory.py,sha256=zbRxlU3hTLJR9fM-PkeTthQ8idrwJD7-AelvXxaoHEQ,988
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  careamics/losses/noise_models.py,sha256=fRr4_mxP_jirC-UkQDVF09RcwqvZJES9JVCc8tccCFc,17801
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  careamics/model_io/__init__.py,sha256=x_wtgBZWoLWFLyrKmYFfc6rP-nLiRsBTqPBed3sT1Vo,156
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- careamics/model_io/bmz_io.py,sha256=aWA5vM_tbxxcaE0OSjDugEF8O9d7n6i5Gf-gL4NnhxA,6943
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- careamics/model_io/model_io_utils.py,sha256=0XHIhpzeY_8IkWlG_eto_x3IQ5z6y9hI3iUJ7l7ylH0,2108
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+ careamics/model_io/bmz_io.py,sha256=i2lfU4nngtBau1HAKlTFhtbmLlhfHKISBsw4MO5F6qY,6955
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+ careamics/model_io/model_io_utils.py,sha256=x5u1HszZgRfvuku4eKQhmInyxRaEzkgNqAhGSyLS6e4,2116
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  careamics/model_io/bioimage/__init__.py,sha256=r94nu8WDAvj0Fbu4C-iJXdOhfSQXeZBvN3UKsLG0RNI,298
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  careamics/model_io/bioimage/_readme_factory.py,sha256=cXNu2ZZdlSM7sfYo16wKSfS8CDoBsvNBj96k0HSk8vw,3498
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- careamics/model_io/bioimage/model_description.py,sha256=AE0SPt3D0o5M0kGjqMNjWQ0X4vlWOOi0uYrC9jMOHQ8,9204
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+ careamics/model_io/bioimage/model_description.py,sha256=pOs3x5NgYe_I4GDzd2Wf6DBLCGQyd-rn7O89J65162I,9207
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  careamics/models/__init__.py,sha256=Wty5hwQb_As33pQOZqY5j-DpDOdh5ArBH4BhQDSuXTQ,133
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@@ -103,7 +104,7 @@ careamics/utils/ram.py,sha256=kI637_OtrOF0SoHfp_EcyszhlCwtufv1q4M-p0XUqgA,198
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- careamics-0.1.0rc3.dist-info/METADATA,sha256=dUyjgINtvSuWkPJalDPURT65eYcVMJQedEcyB_41TQU,4631
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- careamics-0.1.0rc3.dist-info/WHEEL,sha256=zEMcRr9Kr03x1ozGwg5v9NQBKn3kndp6LSoSlVg-jhU,87
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- careamics-0.1.0rc3.dist-info/licenses/LICENSE,sha256=6zdNW-k_xHRKYWUf9tDI_ZplUciFHyj0g16DYuZ2udw,1509
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- careamics-0.1.0rc3.dist-info/RECORD,,
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+ careamics-0.1.0rc4.dist-info/METADATA,sha256=oiCCO7lylOGG_qoLODCWAAx0NaYK7onLI9rltw1mPuA,4631
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+ careamics-0.1.0rc4.dist-info/WHEEL,sha256=zEMcRr9Kr03x1ozGwg5v9NQBKn3kndp6LSoSlVg-jhU,87
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+ careamics-0.1.0rc4.dist-info/licenses/LICENSE,sha256=6zdNW-k_xHRKYWUf9tDI_ZplUciFHyj0g16DYuZ2udw,1509
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+ careamics-0.1.0rc4.dist-info/RECORD,,