careamics 0.0.4.1__py3-none-any.whl → 0.0.5__py3-none-any.whl
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- careamics/careamist.py +235 -25
- careamics/cli/conf.py +19 -30
- careamics/cli/main.py +111 -10
- careamics/cli/utils.py +29 -0
- careamics/config/__init__.py +2 -0
- careamics/config/architectures/lvae_model.py +104 -21
- careamics/config/configuration_factory.py +49 -45
- careamics/config/configuration_model.py +2 -2
- careamics/config/likelihood_model.py +7 -6
- careamics/config/loss_model.py +56 -0
- careamics/config/nm_model.py +24 -24
- careamics/config/vae_algorithm_model.py +14 -13
- careamics/dataset/dataset_utils/running_stats.py +22 -23
- careamics/lightning/lightning_module.py +58 -27
- careamics/lightning/train_data_module.py +15 -1
- careamics/losses/loss_factory.py +1 -85
- careamics/losses/lvae/losses.py +223 -164
- careamics/lvae_training/calibration.py +184 -0
- careamics/lvae_training/dataset/config.py +2 -2
- careamics/lvae_training/dataset/multich_dataset.py +11 -19
- careamics/lvae_training/dataset/multifile_dataset.py +3 -2
- careamics/lvae_training/dataset/types.py +15 -26
- careamics/lvae_training/dataset/utils/index_manager.py +4 -4
- careamics/lvae_training/eval_utils.py +125 -213
- careamics/model_io/bioimage/_readme_factory.py +25 -33
- careamics/model_io/bioimage/cover_factory.py +171 -0
- careamics/model_io/bioimage/model_description.py +35 -22
- careamics/model_io/bmz_io.py +36 -25
- careamics/models/layers.py +6 -4
- careamics/models/lvae/layers.py +348 -975
- careamics/models/lvae/likelihoods.py +10 -8
- careamics/models/lvae/lvae.py +214 -272
- careamics/models/lvae/noise_models.py +179 -112
- careamics/models/lvae/stochastic.py +393 -0
- careamics/models/lvae/utils.py +82 -73
- careamics/utils/lightning_utils.py +57 -0
- careamics/utils/serializers.py +2 -0
- careamics/utils/torch_utils.py +1 -1
- {careamics-0.0.4.1.dist-info → careamics-0.0.5.dist-info}/METADATA +12 -9
- {careamics-0.0.4.1.dist-info → careamics-0.0.5.dist-info}/RECORD +43 -37
- {careamics-0.0.4.1.dist-info → careamics-0.0.5.dist-info}/WHEEL +1 -1
- {careamics-0.0.4.1.dist-info → careamics-0.0.5.dist-info}/entry_points.txt +0 -0
- {careamics-0.0.4.1.dist-info → careamics-0.0.5.dist-info}/licenses/LICENSE +0 -0
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Metadata-Version: 2.
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Metadata-Version: 2.4
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Name: careamics
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Version: 0.0.
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Version: 0.0.5
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Summary: Toolbox for running N2V and friends.
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Project-URL: homepage, https://careamics.github.io/
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Project-URL: repository, https://github.com/CAREamics/careamics
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Classifier: Programming Language :: Python :: 3.12
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Classifier: Typing :: Typed
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Requires-Python: >=3.9
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Requires-Dist: bioimageio-core==0.7
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[](https://python.org)
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[](https://github.com/CAREamics/careamics/actions/workflows/ci.yml)
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[](https://codecov.io/gh/CAREamics/careamics)
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CAREamics is a PyTorch library aimed at simplifying the use of Noise2Void and its many
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careamics/__init__.py,sha256=xBCerWN66hv3T7dRGiUYLflmbJtJt1HqbSg9JCWp8pY,391
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careamics/careamist.py,sha256=
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careamics/careamist.py,sha256=jwR-idgdejBiQK7dJ968BjPsH18y9HTfu4UcYES4SIw,37588
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careamics/conftest.py,sha256=Od4WcaaP0UP-XUMrFr_oo4e6c2hi_RvNbuaRTopwlmI,911
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careamics/py.typed,sha256=esB4cHc6c07uVkGtqf8at7ttEnprwRxwk8obY8Qumq4,187
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careamics/cli/__init__.py,sha256=LbM9bVtU1dy-khmdiIDXwvKy2v8wPBCEUuWqV_8rosA,106
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careamics/cli/utils.py,sha256=ndi6nVWenGCuikGSOcVTCoZQfU3RcAyuH5uUemQRK8M,667
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careamics/config/__init__.py,sha256=ywiA7k3OyDFlsRIPQ_4uc3yqzgEnxOtodD8V7OztB9Q,1188
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careamics/config/data_model.py,sha256=MOXnX6dmI-08b4H_43xOrnSlwdbCtO1UuI9YqOT8djA,15370
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careamics/config/fcn_algorithm_model.py,sha256=eBBjkoyavhvDJFTrjJDkNrWSP_-YaK0cy7qo0lCdBQ0,5105
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careamics/config/inference_model.py,sha256=UE_-ZmCX6LFCbDBOwyGnvuAboF_JNX2m2LcF0WiwgCI,6961
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careamics/config/likelihood_model.py,sha256=4R80kLqIzMf_7JN6RaojLiOudykqp-KM1CuJpET7dho,2288
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careamics/config/loss_model.py,sha256=yYcUBS90Qyon1MxeaHiVP3dJHPJFC0GUvWKGcAb3IHk,2036
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careamics/config/nm_model.py,sha256=xkQXrcXfMPAMpWoFCPRLyDfy4lP_-En4cAcOV4q21KI,4787
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careamics/config/optimizer_models.py,sha256=OWpTydRBBR8wt_af1mZHNNwvL_RtnRFopAOdgjzLo30,5750
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careamics/config/tile_information.py,sha256=c-_xrVPOgcnjiEzQ-9A_GhNPamObkMANbeHaRP29R-4,2059
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careamics/config/training_model.py,sha256=67_ipo_-LxhT4-WqAs40Sg8PjU--my43Qn3BhjvlXxM,3212
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