careamics 0.0.16__py3-none-any.whl → 0.0.17__py3-none-any.whl

{careamics-0.0.16.dist-info → careamics-0.0.17.dist-info}/RECORD

@@ -1,5 +1,5 @@
 careamics/__init__.py,sha256=eHsl7oE8HTKmi7yLMj8Yyp0RbdtN3QDmQQb-4Sn9d8M,475
-careamics/careamist.py,sha256=-CSwSAW9Nupd31zXUxaecC99mKGlMSwuLFJZUlNsib8,37780
+careamics/careamist.py,sha256=e9kXTVF9ECdSDI9QVVNjk1DbuJHvq7uJIdTevIffETU,37939
 careamics/conftest.py,sha256=Od4WcaaP0UP-XUMrFr_oo4e6c2hi_RvNbuaRTopwlmI,911
 careamics/py.typed,sha256=esB4cHc6c07uVkGtqf8at7ttEnprwRxwk8obY8Qumq4,187
 careamics/cli/__init__.py,sha256=LbM9bVtU1dy-khmdiIDXwvKy2v8wPBCEUuWqV_8rosA,106
@@ -8,8 +8,8 @@ careamics/cli/main.py,sha256=21UcqLOP0tM7x25pslw0zRAfJMMEZEzG1xeJZI-QfN0,6533
 careamics/cli/utils.py,sha256=DJvHKpZB6LSSnABKxK6i15ITAyIdyaiAnSdpBPZhuuk,626
 careamics/config/__init__.py,sha256=QRI7byEt82B36foRhHXybWdG7xKAgrUJalIcP4hg_MQ,1752
 careamics/config/callback_model.py,sha256=VT0NyM8R1Mhtsm8SnZqk-0CK1WVaZXbCFJZCRq5DoXI,4108
-careamics/config/configuration.py,sha256=EmamCrBF_4CyA-gJ0VbPVcAvEFArNQkJ_VW5kzUkFt4,13452
-careamics/config/configuration_factories.py,sha256=FFjsht4ZUqrN98CHM_v3zejzUK8IsNZBQlHbHIGysD4,77230
+careamics/config/configuration.py,sha256=6By2zlql29r8ka6EZFfND-8BlPpcQmnf3hMr4metyic,11352
+careamics/config/configuration_factories.py,sha256=UjjCsYPs30j5mG3FqaLSWW-3i9C8eEh9GDoQsl7N-Zc,77597
 careamics/config/configuration_io.py,sha256=P-bP1kzkXxJWOEFP02dEZFNmpuLAPJfJtYhX4bFeaKk,2324
 careamics/config/inference_model.py,sha256=E0s9wjPr3xEOllkf_oyROngq_BBe8Yc3l0Br4ygNFac,6949
 careamics/config/likelihood_model.py,sha256=oXRwY2wGHUNLWqIdYtpo1KfxJxyWvDcRE-6dCVs7DgU,2241
@@ -31,8 +31,14 @@ careamics/config/architectures/architecture_model.py,sha256=gXn4gdLrQP3bmTQxIhzk
 careamics/config/architectures/lvae_model.py,sha256=4EScBNA33WZzyuU0vGFlP3UJcX2GmKuKlklH0v9wgTw,7769
 careamics/config/architectures/unet_model.py,sha256=Aqc_KPf2VKMhNrYwOdmr_ez3iIQz8ZRtsA6t5FFT354,3686
 careamics/config/data/__init__.py,sha256=YS04_USNswKL7kpSn_6BeTvhobAiUVst46_SlCztCxs,171
-careamics/config/data/data_model.py,sha256=FOZcO6pemGCus8h27iDDGJ0j1ZiCOewKBDg1mTZLjCA,13345
-careamics/config/data/ng_data_model.py,sha256=2d47_FbNCVYC5VLaq_XqpfS3JqookLUOc1F6rTOkm04,12215
+careamics/config/data/data_model.py,sha256=FQqSFkqeBHyIHqmMPCh27rTgiSVW40BlIlUCuewxUbg,14616
+careamics/config/data/ng_data_model.py,sha256=Zi8RO1AymoPXjLzU0VSxV-o2at_7W9qKruKVtwzb-v8,17480
+careamics/config/data/patch_filter/__init__.py,sha256=TXTGxvAKsEeB-IYTaIFaI-zWFix5McNLxBD7TQ7inL0,433
+careamics/config/data/patch_filter/filter_model.py,sha256=feNi7fXSC9GS8UZqXxf3f-c405KUmF4k-2aA4yqd_FI,472
+careamics/config/data/patch_filter/mask_filter_model.py,sha256=yGRv6j0Dg_CQ1FzI4m-WXiSwS14s3HjzWIchQaNtaE4,423
+careamics/config/data/patch_filter/max_filter_model.py,sha256=fpLhtDAiVTFPDMHtDom5JLv86SNCZ9hlinIz6v59bYA,351
+careamics/config/data/patch_filter/meanstd_filter_model.py,sha256=mblErVTYX9xbF0TVzaRCDTMNoNK8f4zVJmYiX__0uyQ,479
+careamics/config/data/patch_filter/shannon_filter_model.py,sha256=JDfcmw-O1hC6rtB8jWNCbv4EwPFFncG-dq_QoG9wvJ4,384
 careamics/config/data/patching_strategies/__init__.py,sha256=6ZUors-WzBBQCwMyaSojYJzdXeleFRBlrFls1r-Otdo,394
 careamics/config/data/patching_strategies/_overlapping_patched_model.py,sha256=ysGd8QNNdNzLD6NITmvyjVETG6ohhEFLgWPCS_CYSxE,3030
 careamics/config/data/patching_strategies/_patched_model.py,sha256=wmhM1Qt5qDuMCs76ab7dPoNTjy_lLVIL8TD5AzaIoak,1429
@@ -45,6 +51,7 @@ careamics/config/support/supported_activations.py,sha256=CqOWoziIK5jZZXJO7G7cGg3
 careamics/config/support/supported_algorithms.py,sha256=FKluIBTLQyFZauhMC-mCN7w6w4FdotvFPd8DOl4umko,1090
 careamics/config/support/supported_architectures.py,sha256=pOxvHOAIUkc7HCO0IIg4K22h-Ti5ErtcIkGOjN-zh1s,340
 careamics/config/support/supported_data.py,sha256=rVcBOBUosyvYWZJAofJ66_DucnkkPfPhZMXU6KXugsM,3079
+careamics/config/support/supported_filters.py,sha256=fl2LXGaB0EMXpFurTKskPi28kZOBHtmka_7BqHffjvI,354
 careamics/config/support/supported_loggers.py,sha256=ubSOkGoYabGbm_jmyc1R3eFcvcP-sHmuyiBi_d3_wLg,197
 careamics/config/support/supported_losses.py,sha256=EQompJiL_F4ZHPVORDZf_dAXHBeVikaxfykT6mOnnwQ,671
 careamics/config/support/supported_optimizers.py,sha256=_2XmwzYENB6xpTedyWHUdWuGcDzdlfEAJjzm_qI3yRM,1392
@@ -84,8 +91,8 @@ careamics/dataset/tiling/collate_tiles.py,sha256=XK0BsDQE7XwIwmOoCHJIpVC3kqjSN6n
 careamics/dataset/tiling/lvae_tiled_patching.py,sha256=2oOXnVsZ_L2jtA02Jw7bLfkugZ2ZO8lF105cjxGADoY,13210
 careamics/dataset/tiling/tiled_patching.py,sha256=985vlz9hJdBNKP6z9hL0hU6lXSUPmGpXutdcbyBtv_o,6000
 careamics/dataset_ng/README.md,sha256=489sMnra-cVotBBWNL-jhb9H4eLO1FFa3b5zhfkK34g,9856
-careamics/dataset_ng/dataset.py,sha256=2R7jMUJFBECI-MBROg4QhGM3vJ8EEIpwOMDoBYEQhN8,8810
-careamics/dataset_ng/factory.py,sha256=bjzolF1k9iTj6cY75licyGYielZZvpp3xJwLbw8t5uU,14723
+careamics/dataset_ng/dataset.py,sha256=wpOSTqAWPfl6oB-M9NTGsjZId7BZgSp6kjzptjJSUvw,11007
+careamics/dataset_ng/factory.py,sha256=SKEhEuy0Stdj13815C8La2OSip-71RkkWlPgymGF6F4,17198
 careamics/dataset_ng/legacy_interoperability.py,sha256=K8u7MZRUkrG-gTX-COIykEejTHDxPET4H2oxKhQ_UTw,5559
 careamics/dataset_ng/demos/bsd68_demo.ipynb,sha256=UdpxKq198IV_xqJLcGR_C5rnX95G_zktnfmbltfEw60,10628
 careamics/dataset_ng/demos/care_U2OS_demo.ipynb,sha256=fxuiJ0g65Ts7jFUxHgCGbf30Xoz8kIB4dfh9qfpW1D8,9501
@@ -104,6 +111,14 @@ careamics/dataset_ng/patch_extractor/image_stack/czi_image_stack.py,sha256=5XXbO
 careamics/dataset_ng/patch_extractor/image_stack/image_stack_protocol.py,sha256=NnhqyDmZPuQgU_gjNugNWNX9_NetRguwLg9LfTmd7U8,1649
 careamics/dataset_ng/patch_extractor/image_stack/in_memory_image_stack.py,sha256=0Iw2TFASM-28qoJeAkvwt1N1t79QMMwCqlSoLZOUt08,1912
 careamics/dataset_ng/patch_extractor/image_stack/zarr_image_stack.py,sha256=yAOpwifNEXViDgkrbXSgNugSLVx-BDtDqBz6g6pFhBc,7400
+careamics/dataset_ng/patch_filter/__init__.py,sha256=llqhrtVAGyAMutG5dri9tpZvXaNBJrsk4FKTzt3i6rc,624
+careamics/dataset_ng/patch_filter/coordinate_filter_protocol.py,sha256=kGYapdjVdz1yRMMz6kbzVvZEuzhMbdV1pGh_2o2xawU,670
+careamics/dataset_ng/patch_filter/filter_factory.py,sha256=aIvAq0TDXYpZ9C2-udpjgRNgeDo19YTrhmKnGg4ny-U,2902
+careamics/dataset_ng/patch_filter/mask_filter.py,sha256=Ky27Jw7EQbHdq1gwe7P3DBL7-YCvcXRnMYIYetVMPJ4,3068
+careamics/dataset_ng/patch_filter/max_filter.py,sha256=-qHN67RDwcP57ISVXpe-wzxAUVeLqVHmEhNJ0h8dzCk,6425
+careamics/dataset_ng/patch_filter/mean_std_filter.py,sha256=xc_E7FpDzYvQKYiicROyx8LdVvpFsBSBQghKxTDetBk,7498
+careamics/dataset_ng/patch_filter/patch_filter_protocol.py,sha256=wJaHFjEwsuHSOy7hUXmCUxTNg9KBl4_h2DCxuri48Go,1165
+careamics/dataset_ng/patch_filter/shannon_filter.py,sha256=A8AYDe4dD7PMJj4EEPc5xNA1ZijGKR7Yb3Hxiaht8B0,6261
 careamics/dataset_ng/patching_strategies/__init__.py,sha256=2KwdY_TeD9WQju150WbV2IF19TincHU3lbcL0fqZF5o,549
 careamics/dataset_ng/patching_strategies/patching_strategy_protocol.py,sha256=ukw5G9hIOPEJz-DEFDMuJsGYou7wUeRjALNU8qdgn9g,3475
 careamics/dataset_ng/patching_strategies/random_patching.py,sha256=0qEhUgANJAuhnVYeCiCaiW1gwLWOGAIIFcvriW0_byM,13490
@@ -118,12 +133,12 @@ careamics/file_io/write/__init__.py,sha256=CUt33cRjG9hm18L9a7XqaUKWQ_3xiuQ9ztz4A
 careamics/file_io/write/get_func.py,sha256=hyGHe1RX-lfa9QFAnwRCz_gS0NRiRnXEtg4Bdeh2Esc,1627
 careamics/file_io/write/tiff.py,sha256=tBGIgl-I1sMyBivgx-dOTBykXBODkgwPH8MT3_4KAE8,1050
 careamics/lightning/__init__.py,sha256=NeqZmOgor6EXov6ULmPdGxl5dB39ljibGvjZaA0zkaM,970
-careamics/lightning/lightning_module.py,sha256=isLtzxx60JvaNql6CGuKscaU1MwG-sTRbVl65ik5SpQ,28623
-careamics/lightning/microsplit_data_module.py,sha256=iWDCarLbZQk1RrWlBT6cunaORsWROn_nZGAHxF-hes0,20552
+careamics/lightning/lightning_module.py,sha256=5TJyphmITh00SOcrl3-hLx7tr7sHUaXQgmLFCbYAivE,28647
+careamics/lightning/microsplit_data_module.py,sha256=8BSAiuTmsl2p96Drv6Wnz8LBtMg4Qj1SCS-8Jn50Rss,20597
 careamics/lightning/predict_data_module.py,sha256=EQ-X2go-beMIhGD8bbOm3XorTDfMReFUkk9MewmYxuw,13094
 careamics/lightning/train_data_module.py,sha256=wFWO2wC0uXtoBNcNk8xNMCQxsl7eEJ5cXFOl1DXTYNg,27055
 careamics/lightning/callbacks/__init__.py,sha256=sgP-u7FKnrD83cyWidvaIZZHvCIP-3pwrgZsfzPejow,388
-careamics/lightning/callbacks/data_stats_callback.py,sha256=lEsRmsEu3U0QgyAor5r2xTgq1Hit5K-e-hkeMEkrYac,877
+careamics/lightning/callbacks/data_stats_callback.py,sha256=Z4BPbicdwPLLePdXjRPGKC831zgO-YQxCqONAmYFIz4,1183
 careamics/lightning/callbacks/hyperparameters_callback.py,sha256=u45knOZHwoVHz6yYfrnERQuozT_SfZ1OrKP0QjeU4EM,1495
 careamics/lightning/callbacks/progress_bar_callback.py,sha256=w-j_nk2ysyc4THKfwWbpkiKGeqNUpLGtm-8dYBgla2c,2443
 careamics/lightning/callbacks/prediction_writer_callback/__init__.py,sha256=ZVf3vaSU_NjSjrKbI24H0kK9WAiP9oKXfhP670EaWMo,548
@@ -132,7 +147,7 @@ careamics/lightning/callbacks/prediction_writer_callback/prediction_writer_callb
 careamics/lightning/callbacks/prediction_writer_callback/write_strategy.py,sha256=BulDaQdXoLYoU39sfKrtdnHjY_TIQ8qOvfDjkSWi13s,12572
 careamics/lightning/callbacks/prediction_writer_callback/write_strategy_factory.py,sha256=WLPWuZbLZ1pJWwAssqK9ObLZsljMhu-lxN0xe7_yCKc,7083
 careamics/lightning/dataset_ng/__init__.py,sha256=5913hBQ5FRn4K-zzPtrqh-2zN4iie9bD-KXm0-_FNXY,49
-careamics/lightning/dataset_ng/data_module.py,sha256=PyU7igSn22vnrPJLyVn2UYo9szS3NXayRZY5wqo8iu8,26229
+careamics/lightning/dataset_ng/data_module.py,sha256=4BHMwcvji0taqA6ga8n-uc0oLjsuEMMD7Y33aO9wC4k,29160
 careamics/lightning/dataset_ng/lightning_modules/__init__.py,sha256=Kx7NkwAS9rqfozxamMWcJa3U8zw47HT5T8R1E0Uk8Rc,164
 careamics/lightning/dataset_ng/lightning_modules/care_module.py,sha256=Mc72uucp8DOObIfK05-LvzFVbXcBQ5IZ7vDUeYoMt1Q,3145
 careamics/lightning/dataset_ng/lightning_modules/n2v_module.py,sha256=DD9JkNDD-nbBNDjmUP-PWTr_sbNaYb8_TKXpUC6FB5Q,3355
@@ -146,7 +161,7 @@ careamics/losses/lvae/loss_utils.py,sha256=QxzA2N1TglR4H0X0uyTWWytDagE1lA9IB_TK1
 careamics/losses/lvae/losses.py,sha256=rzeEnPQnyp0Eej2l8XwpSDeiaD_k5qE63LHdSpfR3Ik,20798
 careamics/lvae_training/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 careamics/lvae_training/calibration.py,sha256=xHbiLcY2csYos3s7rRSqp7P7G-9wzULcSo1JfVzfIjE,7239
-careamics/lvae_training/eval_utils.py,sha256=PWKlG2XrvdfZTG0_brcADaAA0owTeNRT1g673gYtk5k,34410
+careamics/lvae_training/eval_utils.py,sha256=D_RmDMVOu-6XAMBogOG6zCL2m7bU0YOXr8p2lLEzm4s,34573
 careamics/lvae_training/get_config.py,sha256=dwVfaQS7nzjQss0E1gGLUpQpjPcOWwLgIhbu3Z0I1rg,3068
 careamics/lvae_training/lightning_module.py,sha256=ryr7iHqCMzCl5esi6_gEcnKFDQkMrw0EXK9Zfgv1Nek,27186
 careamics/lvae_training/metrics.py,sha256=KTDAKhe3vh-YxzGibjtkIG2nnUyujbnwqX4xGwaRXwE,6718
@@ -180,7 +195,7 @@ careamics/models/model_factory.py,sha256=GWbouERvEfHj_BrpKHYgrPAj8dpdoh1R-X--Jt0
 careamics/models/unet.py,sha256=f7QT_tHilub9y22RF9rki9ISjS6BYA0fJn5ULwHtVAo,14785
 careamics/models/lvae/__init__.py,sha256=6dT6uqgT__V08EjoTGxXguTbTkySZmByS9J2Bj6WWLM,53
 careamics/models/lvae/layers.py,sha256=UPxZiZjgnBnPs_wdSzcP-_s17MEw4P1CoIZzn4OdUA0,57944
-careamics/models/lvae/likelihoods.py,sha256=uxALdNy9NBX0Vqy36er3jdFg3bdCC-CBp5TBY-YUbZE,12727
+careamics/models/lvae/likelihoods.py,sha256=-FtUnqUPNkkNYTQdTSpYMUcxc_QJ_9MJgsndav026lg,12744
 careamics/models/lvae/lvae.py,sha256=0JIX8ylMDO2fshc0m_0vG8WHRlU30cykp5zpCUQJOSI,34754
 careamics/models/lvae/noise_models.py,sha256=X3FzpNPnHsnadW2C4bXUJwUQLtaNoiWwUhhei7lScZ0,24555
 careamics/models/lvae/stochastic.py,sha256=wiTrLBSYwOvsF1araKxUHy1CHp1mdH9bazctVo0NchA,16628
@@ -188,8 +203,8 @@ careamics/models/lvae/utils.py,sha256=EE3paHu3vhCaqfOrGypzUsImZJO94uBhx8q6kZ-R36
 careamics/prediction_utils/__init__.py,sha256=u18N8a9MSYa1RRIrJOPBgbiaLwFDDjsKEO8B0zDtMao,401
 careamics/prediction_utils/lvae_prediction.py,sha256=B66w0F5GM95yhD68L9Sg1LqgtxgIgi_a_83WlN4fZu4,6188
 careamics/prediction_utils/lvae_tiling_manager.py,sha256=SI-JaJvLrKWBSHdm-FjcqWdbhlcflTRiKxYF7CSGzvA,13736
-careamics/prediction_utils/prediction_outputs.py,sha256=RncK9HOA9eApzhgU5v8LjTKCWaOFreUvJw8C_vLxd_U,5767
-careamics/prediction_utils/stitch_prediction.py,sha256=Dr3AuQN9yRGtzQjjJcOzGH8flo3JuO5xIkX64ouqoMg,6463
+careamics/prediction_utils/prediction_outputs.py,sha256=HH4W9EoAoPX2My5H8tli8uEuLgDpSoaksX2grAtrR5E,5771
+careamics/prediction_utils/stitch_prediction.py,sha256=Y0QQFJdoVSwly-zu2H86qXGqblTArcxkDuVc18VQyes,6723
 careamics/transforms/__init__.py,sha256=n7D3SbcVSRaMOl5F5Rozo2_lY8dn0DH28ywYIdbXxBo,561
 careamics/transforms/compose.py,sha256=8hOfcPDlI9z0kmlsi2QlIyEX3Y7gJxx1typCEdJszq0,5361
 careamics/transforms/n2v_manipulate.py,sha256=pAwGEZW_SFwbbVQGwpfWl6SVIa7slvfSSfve6sIHq_w,5670
@@ -215,9 +230,9 @@ careamics/utils/ram.py,sha256=tksyn8dVX_iJXmrDZDGub32hFZWIaNxnMheO5G1p43I,244
 careamics/utils/receptive_field.py,sha256=Y2h4c8S6glX3qcx5KHDmO17Kkuyey9voxfoXyqcAfiM,3296
 careamics/utils/serializers.py,sha256=mILUhz75IMpGKnEzcYu9hlOPG8YIiIW09fk6eZM7Y8k,1427
 careamics/utils/torch_utils.py,sha256=IUTxKIqYpUTvN-UDZDGBheF7zgtskH_yDcVvYx0p8zI,3478
-careamics/utils/version.py,sha256=WKtMlrNmXymJqzMfguBX558D6tb6aoAZfbABRh_ViIs,1142
-careamics-0.0.16.dist-info/METADATA,sha256=L2pnu0KFm9PP3OA-riakzhIIM_z_P96O_fPCM3ZaZ-U,4055
-careamics-0.0.16.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
-careamics-0.0.16.dist-info/entry_points.txt,sha256=2fSNVXJWDJgFLATVj7MkjFNvpl53amG8tUzC3jf7G1s,53
-careamics-0.0.16.dist-info/licenses/LICENSE,sha256=6zdNW-k_xHRKYWUf9tDI_ZplUciFHyj0g16DYuZ2udw,1509
-careamics-0.0.16.dist-info/RECORD,,
+careamics/utils/version.py,sha256=i2d02OGg2dmdVrxk6auomCGDzLxCd8q4540hB7SzXYQ,1152
+careamics-0.0.17.dist-info/METADATA,sha256=AuSVi9CrMMspo0kJ3dne8MSvdEsC7VNJZhzR2PFEjBk,3837
+careamics-0.0.17.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+careamics-0.0.17.dist-info/entry_points.txt,sha256=2fSNVXJWDJgFLATVj7MkjFNvpl53amG8tUzC3jf7G1s,53
+careamics-0.0.17.dist-info/licenses/LICENSE,sha256=6zdNW-k_xHRKYWUf9tDI_ZplUciFHyj0g16DYuZ2udw,1509
+careamics-0.0.17.dist-info/RECORD,,