careamics 0.0.13__py3-none-any.whl → 0.0.15__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Potentially problematic release.
This version of careamics might be problematic. Click here for more details.
- careamics/careamist.py +49 -49
- careamics/cli/conf.py +6 -6
- careamics/cli/main.py +8 -8
- careamics/cli/utils.py +2 -4
- careamics/config/algorithms/vae_algorithm_model.py +4 -4
- careamics/config/callback_model.py +8 -8
- careamics/config/configuration_factories.py +49 -49
- careamics/config/data/data_model.py +7 -13
- careamics/config/data/ng_data_model.py +8 -14
- careamics/config/data/patching_strategies/_overlapping_patched_model.py +4 -5
- careamics/config/inference_model.py +6 -10
- careamics/config/likelihood_model.py +2 -2
- careamics/config/nm_model.py +5 -7
- careamics/config/training_model.py +4 -4
- careamics/config/transformations/normalize_model.py +3 -3
- careamics/config/transformations/xy_flip_model.py +2 -2
- careamics/config/transformations/xy_random_rotate90_model.py +2 -2
- careamics/config/validators/validator_utils.py +1 -2
- careamics/dataset/dataset_utils/iterate_over_files.py +3 -3
- careamics/dataset/in_memory_dataset.py +2 -2
- careamics/dataset/iterable_dataset.py +1 -2
- careamics/dataset/patching/random_patching.py +6 -6
- careamics/dataset/patching/sequential_patching.py +4 -4
- careamics/dataset/tiling/lvae_tiled_patching.py +2 -2
- careamics/dataset_ng/dataset.py +3 -3
- careamics/dataset_ng/factory.py +19 -19
- careamics/dataset_ng/patching_strategies/random_patching.py +3 -4
- careamics/dataset_ng/patching_strategies/sequential_patching.py +1 -2
- careamics/lightning/callbacks/prediction_writer_callback/prediction_writer_callback.py +5 -5
- careamics/lightning/callbacks/prediction_writer_callback/write_strategy.py +5 -5
- careamics/lightning/callbacks/prediction_writer_callback/write_strategy_factory.py +8 -8
- careamics/lightning/dataset_ng/data_module.py +43 -43
- careamics/lightning/lightning_module.py +12 -14
- careamics/lightning/predict_data_module.py +8 -8
- careamics/lightning/train_data_module.py +11 -11
- careamics/losses/lvae/losses.py +9 -9
- careamics/model_io/bioimage/model_description.py +12 -11
- careamics/model_io/bmz_io.py +4 -4
- careamics/models/layers.py +5 -5
- careamics/models/unet.py +16 -10
- careamics/prediction_utils/lvae_prediction.py +5 -5
- careamics/transforms/compose.py +9 -9
- careamics/transforms/n2v_manipulate.py +3 -3
- careamics/transforms/n2v_manipulate_torch.py +4 -4
- careamics/transforms/normalize.py +4 -6
- careamics/transforms/pixel_manipulation.py +6 -8
- careamics/transforms/pixel_manipulation_torch.py +5 -7
- careamics/transforms/xy_flip.py +3 -5
- careamics/transforms/xy_random_rotate90.py +3 -5
- careamics/utils/logging.py +8 -8
- careamics/utils/metrics.py +2 -2
- careamics/utils/plotting.py +1 -3
- {careamics-0.0.13.dist-info → careamics-0.0.15.dist-info}/METADATA +2 -3
- {careamics-0.0.13.dist-info → careamics-0.0.15.dist-info}/RECORD +57 -57
- {careamics-0.0.13.dist-info → careamics-0.0.15.dist-info}/WHEEL +0 -0
- {careamics-0.0.13.dist-info → careamics-0.0.15.dist-info}/entry_points.txt +0 -0
- {careamics-0.0.13.dist-info → careamics-0.0.15.dist-info}/licenses/LICENSE +0 -0
|
@@ -1,38 +1,38 @@
|
|
|
1
1
|
careamics/__init__.py,sha256=eHsl7oE8HTKmi7yLMj8Yyp0RbdtN3QDmQQb-4Sn9d8M,475
|
|
2
|
-
careamics/careamist.py,sha256=
|
|
2
|
+
careamics/careamist.py,sha256=DeOt9u_EvRtRkzQ9NzBoyMxSNb8vO1tFHVwopI_37TY,38172
|
|
3
3
|
careamics/conftest.py,sha256=Od4WcaaP0UP-XUMrFr_oo4e6c2hi_RvNbuaRTopwlmI,911
|
|
4
4
|
careamics/py.typed,sha256=esB4cHc6c07uVkGtqf8at7ttEnprwRxwk8obY8Qumq4,187
|
|
5
5
|
careamics/cli/__init__.py,sha256=LbM9bVtU1dy-khmdiIDXwvKy2v8wPBCEUuWqV_8rosA,106
|
|
6
|
-
careamics/cli/conf.py,sha256=
|
|
7
|
-
careamics/cli/main.py,sha256=
|
|
8
|
-
careamics/cli/utils.py,sha256=
|
|
6
|
+
careamics/cli/conf.py,sha256=ePp0hxcP3vUQWr5m2bgsxNBw7sS6eMu8F6pGhV8TvAU,13049
|
|
7
|
+
careamics/cli/main.py,sha256=21UcqLOP0tM7x25pslw0zRAfJMMEZEzG1xeJZI-QfN0,6533
|
|
8
|
+
careamics/cli/utils.py,sha256=DJvHKpZB6LSSnABKxK6i15ITAyIdyaiAnSdpBPZhuuk,626
|
|
9
9
|
careamics/config/__init__.py,sha256=K0N1GIqFCYhpPjalZG-Ygap6Ew_dDAC0uw5Npzhg9Lk,1524
|
|
10
|
-
careamics/config/callback_model.py,sha256=
|
|
10
|
+
careamics/config/callback_model.py,sha256=lxytx4rwqOI-UxW8eHTdfLE3K4eIlg907w4Xk9Nul7Y,4065
|
|
11
11
|
careamics/config/configuration.py,sha256=gNBKxeHqAQLa8_btGuQ4-X4987cRPr5L6RI6hOv179Q,13345
|
|
12
|
-
careamics/config/configuration_factories.py,sha256=
|
|
12
|
+
careamics/config/configuration_factories.py,sha256=P_VWHOJEjW-s_yAOKul9TV41yufsQLzRyCPSKJrjUjc,45959
|
|
13
13
|
careamics/config/configuration_io.py,sha256=P-bP1kzkXxJWOEFP02dEZFNmpuLAPJfJtYhX4bFeaKk,2324
|
|
14
|
-
careamics/config/inference_model.py,sha256=
|
|
15
|
-
careamics/config/likelihood_model.py,sha256=
|
|
14
|
+
careamics/config/inference_model.py,sha256=OiNLR4srvbaNcsvA5_Zwc3tqr7yQAXXeSxm5aAEpySM,6978
|
|
15
|
+
careamics/config/likelihood_model.py,sha256=mxyhEHC6wS02t5lqFE3l-8N1DpzrTqEiQSswEy3DJgs,2246
|
|
16
16
|
careamics/config/loss_model.py,sha256=yYcUBS90Qyon1MxeaHiVP3dJHPJFC0GUvWKGcAb3IHk,2036
|
|
17
|
-
careamics/config/nm_model.py,sha256=
|
|
17
|
+
careamics/config/nm_model.py,sha256=M_YE2fiYgJT1pGF7JpzhDvgTnd8CP6DxZXIjxG9q5Qg,4722
|
|
18
18
|
careamics/config/optimizer_models.py,sha256=9qxcLjtDp5LjYX52u21Rom4F3_GZUV2GJimrK3un574,5717
|
|
19
19
|
careamics/config/tile_information.py,sha256=c-_xrVPOgcnjiEzQ-9A_GhNPamObkMANbeHaRP29R-4,2059
|
|
20
|
-
careamics/config/training_model.py,sha256=
|
|
20
|
+
careamics/config/training_model.py,sha256=6XvXMIT2H8vxyGfb9L4cSRqpmlurBPeyWYS6RYhDZaA,3095
|
|
21
21
|
careamics/config/algorithms/__init__.py,sha256=on5D6zBO9Lu-Tf5To8xpF6owIFqdN7RSmZdpyXDOaNw,404
|
|
22
22
|
careamics/config/algorithms/care_algorithm_model.py,sha256=ncf89BC2aFPFSquJ65-Y7NpwVbvgPE0BKH6Up1OHa1s,3238
|
|
23
23
|
careamics/config/algorithms/n2n_algorithm_model.py,sha256=OZbRis9jhRKWNK1-Z_aw2tfJRuGdlJiYEYlH4Hr1FRs,3066
|
|
24
24
|
careamics/config/algorithms/n2v_algorithm_model.py,sha256=IkHsTj-IkWq--mlWjBHfH18CGK_3p2uaC3Zz2tfieaA,9469
|
|
25
25
|
careamics/config/algorithms/unet_algorithm_model.py,sha256=OaBFVlhsb9YhF3f2x1ImazvfnZ4_DPWvYWihRwurkeg,2587
|
|
26
|
-
careamics/config/algorithms/vae_algorithm_model.py,sha256=
|
|
26
|
+
careamics/config/algorithms/vae_algorithm_model.py,sha256=JFHWtoLEKt0PthJYiDq3TfBl7fJudODUvtCyTeFZvvg,4661
|
|
27
27
|
careamics/config/architectures/__init__.py,sha256=lYUz56R7LDqVQWQDLkLgJL8VtOyxc_ege1r4bXGEBqA,220
|
|
28
28
|
careamics/config/architectures/architecture_model.py,sha256=gXn4gdLrQP3bmTQxIhzkEHYlodPaIp6LI-kwZl23W-Y,911
|
|
29
29
|
careamics/config/architectures/lvae_model.py,sha256=lwOiJYNUqPrZFl9SpPLYon77EiRbe2eI7pmpx45rO78,7606
|
|
30
30
|
careamics/config/architectures/unet_model.py,sha256=Aqc_KPf2VKMhNrYwOdmr_ez3iIQz8ZRtsA6t5FFT354,3686
|
|
31
31
|
careamics/config/data/__init__.py,sha256=YS04_USNswKL7kpSn_6BeTvhobAiUVst46_SlCztCxs,171
|
|
32
|
-
careamics/config/data/data_model.py,sha256=
|
|
33
|
-
careamics/config/data/ng_data_model.py,sha256=
|
|
32
|
+
careamics/config/data/data_model.py,sha256=4zqLKfH1dhOl7CDHvIANrfSbJnUhnkfrCvAJF5F7MdQ,13374
|
|
33
|
+
careamics/config/data/ng_data_model.py,sha256=0RSUvSMoIVcQY4a1drCMHMcOBp15xHchtnEk-nUiTvU,12244
|
|
34
34
|
careamics/config/data/patching_strategies/__init__.py,sha256=6ZUors-WzBBQCwMyaSojYJzdXeleFRBlrFls1r-Otdo,394
|
|
35
|
-
careamics/config/data/patching_strategies/_overlapping_patched_model.py,sha256=
|
|
35
|
+
careamics/config/data/patching_strategies/_overlapping_patched_model.py,sha256=ysGd8QNNdNzLD6NITmvyjVETG6ohhEFLgWPCS_CYSxE,3030
|
|
36
36
|
careamics/config/data/patching_strategies/_patched_model.py,sha256=wmhM1Qt5qDuMCs76ab7dPoNTjy_lLVIL8TD5AzaIoak,1429
|
|
37
37
|
careamics/config/data/patching_strategies/random_patching_model.py,sha256=HZfPLkkhwYNQ11O-ahmoaE1bTw7rXg2mIIqsBNkY4WE,533
|
|
38
38
|
careamics/config/data/patching_strategies/sequential_patching_model.py,sha256=sS1h-sHUGvlh41b4kc_3B858ZCPDMJlPb6roAhDL63Y,865
|
|
@@ -52,39 +52,39 @@ careamics/config/support/supported_struct_axis.py,sha256=alZMA5Y-BpDymLPUEd1zqVY
|
|
|
52
52
|
careamics/config/support/supported_transforms.py,sha256=ylTiS8fUFKFwfn85gh7kKF4Trb9Q4ENPKm-XDWCe-SY,311
|
|
53
53
|
careamics/config/transformations/__init__.py,sha256=6THr9oNI06umw_cchXW9sCeBLpFIcJfGC4hdq3WvUsI,577
|
|
54
54
|
careamics/config/transformations/n2v_manipulate_model.py,sha256=IJ_MeNbVzwnmvLhBjAVZPj5fxPzUXYGYYRe5PHcWIzQ,2428
|
|
55
|
-
careamics/config/transformations/normalize_model.py,sha256=
|
|
55
|
+
careamics/config/transformations/normalize_model.py,sha256=_gQmUTlrPlMx5fptoZbB0Ov7PdJQoeDAw81XMCtQRr4,1920
|
|
56
56
|
careamics/config/transformations/transform_model.py,sha256=6UVbXnxm-LLZOQQ-ZBwWwgmS_99DiBuERLfMxrta3-8,990
|
|
57
57
|
careamics/config/transformations/transform_unions.py,sha256=lOwwX2LZPhfb0GR8B1jtJeuoDa9jIbOmh_W0rlebS1g,784
|
|
58
|
-
careamics/config/transformations/xy_flip_model.py,sha256=
|
|
59
|
-
careamics/config/transformations/xy_random_rotate90_model.py,sha256=
|
|
58
|
+
careamics/config/transformations/xy_flip_model.py,sha256=2k4tiUZK3GVn9hEjFlWi0ypz-k5C2XKKO6elU7HlKmI,1012
|
|
59
|
+
careamics/config/transformations/xy_random_rotate90_model.py,sha256=Z0vhD9Hal_rpwWHlOA53ADDcUrrApESzZBa50HD7gRc,881
|
|
60
60
|
careamics/config/validators/__init__.py,sha256=zRrIse0O3ImwG97NphEupFVm3Ib9nEJhpNNrKGyDTps,423
|
|
61
61
|
careamics/config/validators/model_validators.py,sha256=9OCdlf7rmndtTpmQ8COLaEjURYYmszic_RjY9mzS-k4,1941
|
|
62
|
-
careamics/config/validators/validator_utils.py,sha256=
|
|
62
|
+
careamics/config/validators/validator_utils.py,sha256=NUmH_NheVwbx3rQi_pKTjMqX-_k89UIAlKBc7RlQLls,2578
|
|
63
63
|
careamics/dataset/__init__.py,sha256=31vop67zbtGesENEIig-LLw1q2lCydMFc_YWgfK2Yt4,547
|
|
64
|
-
careamics/dataset/in_memory_dataset.py,sha256=
|
|
64
|
+
careamics/dataset/in_memory_dataset.py,sha256=Grt9w4QuhJrTbcHmEJeifmTm06-U09M-6FGyaFw_UXU,9679
|
|
65
65
|
careamics/dataset/in_memory_pred_dataset.py,sha256=0f_lS8APDmA7KPaZjF9NmD9kjB0tGwUefALu1MEiWB8,2141
|
|
66
66
|
careamics/dataset/in_memory_tiled_pred_dataset.py,sha256=fKg3_Mmx0hXlOjuWU6lhTVRsm02D21J-IOYmTIm4UsE,3561
|
|
67
|
-
careamics/dataset/iterable_dataset.py,sha256=
|
|
67
|
+
careamics/dataset/iterable_dataset.py,sha256=xDt2985m-K1P5G2EaNHOHg54-fjRI6MfZTdNB4NdSJI,9752
|
|
68
68
|
careamics/dataset/iterable_pred_dataset.py,sha256=4OsyDQv9udIh7R8UixTLeB_jVtaG-6z38bMqWRqxMxI,3750
|
|
69
69
|
careamics/dataset/iterable_tiled_pred_dataset.py,sha256=4553dDF9_yQkb--g2wWD8rempMk_DTLYgRgt5T03mW0,4594
|
|
70
70
|
careamics/dataset/zarr_dataset.py,sha256=lojnK5bhiF1vyjuPtWXBrZ9sy5fT_rBvZJbbbnE-H_I,5665
|
|
71
71
|
careamics/dataset/dataset_utils/__init__.py,sha256=MJ3xriL6R4ZtmzbvLsASUWLb85Hk5AdeRaYnHpNELJQ,507
|
|
72
72
|
careamics/dataset/dataset_utils/dataset_utils.py,sha256=X83DzaOWmHdl4eOPac2IQJH3bPA43RVq0hPrFrzvIXQ,2630
|
|
73
73
|
careamics/dataset/dataset_utils/file_utils.py,sha256=ru6AtQ9LCmo6raN1-GnJEN4UyP1PbmSdR9MEys3CuHo,4094
|
|
74
|
-
careamics/dataset/dataset_utils/iterate_over_files.py,sha256=
|
|
74
|
+
careamics/dataset/dataset_utils/iterate_over_files.py,sha256=mVY1PAnLQn-xr8PDfXspiPrsv0k6o8ypor6_1MB59_k,2882
|
|
75
75
|
careamics/dataset/dataset_utils/running_stats.py,sha256=clnSs4TR-lUiQNIYs1ay1_n3wUoeRQqY83V2K70ZBtM,5897
|
|
76
76
|
careamics/dataset/patching/__init__.py,sha256=7-s12oUAZNlMOwSkxSwbD7vojQINWYFzn_4qIJ87WBg,37
|
|
77
77
|
careamics/dataset/patching/patching.py,sha256=InV9Nt9JeRp9xo5W42nPwP_zif_AjC0O5-w2nyH9Qyw,8899
|
|
78
|
-
careamics/dataset/patching/random_patching.py,sha256=
|
|
79
|
-
careamics/dataset/patching/sequential_patching.py,sha256=
|
|
78
|
+
careamics/dataset/patching/random_patching.py,sha256=8ZrC5CygBLnA4e1yXJg4XT3RnsIeN9PMzuTRkO_wPo8,6462
|
|
79
|
+
careamics/dataset/patching/sequential_patching.py,sha256=Dg5C57hO7BqnKP2sJh2xylupzmuV2lvTs4vYe5KTH-Q,5871
|
|
80
80
|
careamics/dataset/patching/validate_patch_dimension.py,sha256=mC2bZWBpU44NEvXxEfR7ULUKwWPuZPjmBWpHYJxNDWc,2121
|
|
81
81
|
careamics/dataset/tiling/__init__.py,sha256=aW_AMB9rzm0VmooUpjcyqv6sQP69RlPQMEdP2sVjdz8,190
|
|
82
82
|
careamics/dataset/tiling/collate_tiles.py,sha256=XK0BsDQE7XwIwmOoCHJIpVC3kqjSN6nDhrJ4POVeHS8,965
|
|
83
|
-
careamics/dataset/tiling/lvae_tiled_patching.py,sha256=
|
|
83
|
+
careamics/dataset/tiling/lvae_tiled_patching.py,sha256=2oOXnVsZ_L2jtA02Jw7bLfkugZ2ZO8lF105cjxGADoY,13210
|
|
84
84
|
careamics/dataset/tiling/tiled_patching.py,sha256=985vlz9hJdBNKP6z9hL0hU6lXSUPmGpXutdcbyBtv_o,6000
|
|
85
85
|
careamics/dataset_ng/README.md,sha256=489sMnra-cVotBBWNL-jhb9H4eLO1FFa3b5zhfkK34g,9856
|
|
86
|
-
careamics/dataset_ng/dataset.py,sha256=
|
|
87
|
-
careamics/dataset_ng/factory.py,sha256=
|
|
86
|
+
careamics/dataset_ng/dataset.py,sha256=2R7jMUJFBECI-MBROg4QhGM3vJ8EEIpwOMDoBYEQhN8,8810
|
|
87
|
+
careamics/dataset_ng/factory.py,sha256=bjzolF1k9iTj6cY75licyGYielZZvpp3xJwLbw8t5uU,14723
|
|
88
88
|
careamics/dataset_ng/legacy_interoperability.py,sha256=K8u7MZRUkrG-gTX-COIykEejTHDxPET4H2oxKhQ_UTw,5559
|
|
89
89
|
careamics/dataset_ng/demos/bsd68_demo.ipynb,sha256=UdpxKq198IV_xqJLcGR_C5rnX95G_zktnfmbltfEw60,10628
|
|
90
90
|
careamics/dataset_ng/demos/care_U2OS_demo.ipynb,sha256=fxuiJ0g65Ts7jFUxHgCGbf30Xoz8kIB4dfh9qfpW1D8,9501
|
|
@@ -105,8 +105,8 @@ careamics/dataset_ng/patch_extractor/image_stack/in_memory_image_stack.py,sha256
|
|
|
105
105
|
careamics/dataset_ng/patch_extractor/image_stack/zarr_image_stack.py,sha256=hmNOl6-FMUNQS65YMSa4eAz3Rp_2es98p1_UY6S8B50,6590
|
|
106
106
|
careamics/dataset_ng/patching_strategies/__init__.py,sha256=2KwdY_TeD9WQju150WbV2IF19TincHU3lbcL0fqZF5o,549
|
|
107
107
|
careamics/dataset_ng/patching_strategies/patching_strategy_protocol.py,sha256=ukw5G9hIOPEJz-DEFDMuJsGYou7wUeRjALNU8qdgn9g,3475
|
|
108
|
-
careamics/dataset_ng/patching_strategies/random_patching.py,sha256=
|
|
109
|
-
careamics/dataset_ng/patching_strategies/sequential_patching.py,sha256=
|
|
108
|
+
careamics/dataset_ng/patching_strategies/random_patching.py,sha256=0qEhUgANJAuhnVYeCiCaiW1gwLWOGAIIFcvriW0_byM,13490
|
|
109
|
+
careamics/dataset_ng/patching_strategies/sequential_patching.py,sha256=Qsqqf8D_2SxSRgrhYMpD0VgmAqHX-jiw-wRvDfwTYHA,2460
|
|
110
110
|
careamics/dataset_ng/patching_strategies/tiling_strategy.py,sha256=jKug3ocARe-pSqSB3g27T7GGmrrQ6eRYbp_m49BJ4-4,6415
|
|
111
111
|
careamics/dataset_ng/patching_strategies/whole_sample.py,sha256=o1Z4iHKveq9X--LRV-gdUQqB-TPVxr2RvaKHmgDnCx0,1249
|
|
112
112
|
careamics/file_io/__init__.py,sha256=vgMI77X820VOWywAEW5W20FXfmbqBzx4V63D3V3_HhI,334
|
|
@@ -118,19 +118,19 @@ careamics/file_io/write/__init__.py,sha256=CUt33cRjG9hm18L9a7XqaUKWQ_3xiuQ9ztz4A
|
|
|
118
118
|
careamics/file_io/write/get_func.py,sha256=hyGHe1RX-lfa9QFAnwRCz_gS0NRiRnXEtg4Bdeh2Esc,1627
|
|
119
119
|
careamics/file_io/write/tiff.py,sha256=tBGIgl-I1sMyBivgx-dOTBykXBODkgwPH8MT3_4KAE8,1050
|
|
120
120
|
careamics/lightning/__init__.py,sha256=ATCVAGnX08Ik4TxbIv0-cXb52UinR42JgvZh_GIMSpc,588
|
|
121
|
-
careamics/lightning/lightning_module.py,sha256=
|
|
122
|
-
careamics/lightning/predict_data_module.py,sha256=
|
|
123
|
-
careamics/lightning/train_data_module.py,sha256=
|
|
121
|
+
careamics/lightning/lightning_module.py,sha256=EgRIWOHxZ9FZyS2lGaRSGaVecT8revXjd4mE59se7T0,24311
|
|
122
|
+
careamics/lightning/predict_data_module.py,sha256=yahMMPbEIX0AXNgA2PKIABm9cYEXlyhl0SKc1GCDEZU,12741
|
|
123
|
+
careamics/lightning/train_data_module.py,sha256=028si-InvNHbr78ne1sEudhwKz-ReZGNIoOtr9hUlvc,26541
|
|
124
124
|
careamics/lightning/callbacks/__init__.py,sha256=eA5ltzYNzuO0uMEr1jG4wP01b0s29s5I03WGJ290qkw,312
|
|
125
125
|
careamics/lightning/callbacks/hyperparameters_callback.py,sha256=u45knOZHwoVHz6yYfrnERQuozT_SfZ1OrKP0QjeU4EM,1495
|
|
126
126
|
careamics/lightning/callbacks/progress_bar_callback.py,sha256=w-j_nk2ysyc4THKfwWbpkiKGeqNUpLGtm-8dYBgla2c,2443
|
|
127
127
|
careamics/lightning/callbacks/prediction_writer_callback/__init__.py,sha256=ZVf3vaSU_NjSjrKbI24H0kK9WAiP9oKXfhP670EaWMo,548
|
|
128
128
|
careamics/lightning/callbacks/prediction_writer_callback/file_path_utils.py,sha256=i4vGGiVLslafi-5iuvkAKzBgZ0BpwTTxSTo31oViFz4,1480
|
|
129
|
-
careamics/lightning/callbacks/prediction_writer_callback/prediction_writer_callback.py,sha256=
|
|
130
|
-
careamics/lightning/callbacks/prediction_writer_callback/write_strategy.py,sha256=
|
|
131
|
-
careamics/lightning/callbacks/prediction_writer_callback/write_strategy_factory.py,sha256=
|
|
129
|
+
careamics/lightning/callbacks/prediction_writer_callback/prediction_writer_callback.py,sha256=aWj6TbNmRNSxAL32GjrVQ1TNtK0Jr7t2od33nSgGjW4,8188
|
|
130
|
+
careamics/lightning/callbacks/prediction_writer_callback/write_strategy.py,sha256=BulDaQdXoLYoU39sfKrtdnHjY_TIQ8qOvfDjkSWi13s,12572
|
|
131
|
+
careamics/lightning/callbacks/prediction_writer_callback/write_strategy_factory.py,sha256=WLPWuZbLZ1pJWwAssqK9ObLZsljMhu-lxN0xe7_yCKc,7083
|
|
132
132
|
careamics/lightning/dataset_ng/__init__.py,sha256=5913hBQ5FRn4K-zzPtrqh-2zN4iie9bD-KXm0-_FNXY,49
|
|
133
|
-
careamics/lightning/dataset_ng/data_module.py,sha256=
|
|
133
|
+
careamics/lightning/dataset_ng/data_module.py,sha256=PyU7igSn22vnrPJLyVn2UYo9szS3NXayRZY5wqo8iu8,26229
|
|
134
134
|
careamics/lightning/dataset_ng/lightning_modules/__init__.py,sha256=Kx7NkwAS9rqfozxamMWcJa3U8zw47HT5T8R1E0Uk8Rc,164
|
|
135
135
|
careamics/lightning/dataset_ng/lightning_modules/care_module.py,sha256=Mc72uucp8DOObIfK05-LvzFVbXcBQ5IZ7vDUeYoMt1Q,3145
|
|
136
136
|
careamics/lightning/dataset_ng/lightning_modules/n2v_module.py,sha256=DD9JkNDD-nbBNDjmUP-PWTr_sbNaYb8_TKXpUC6FB5Q,3355
|
|
@@ -141,7 +141,7 @@ careamics/losses/fcn/__init__.py,sha256=kf92MKFGHr6upiztZVgWwtGPf734DZyub92Rn8uE
|
|
|
141
141
|
careamics/losses/fcn/losses.py,sha256=KuoXqL24QbTxDdRmQJbERC95x0f3u4T0S77dqBZRarQ,2513
|
|
142
142
|
careamics/losses/lvae/__init__.py,sha256=0FNtMLHrOMfagtWkaBdz1NTjyf2y0QLgysxJv5jq5uw,19
|
|
143
143
|
careamics/losses/lvae/loss_utils.py,sha256=QxzA2N1TglR4H0X0uyTWWytDagE1lA9IB_TK1lms3ao,2720
|
|
144
|
-
careamics/losses/lvae/losses.py,sha256=
|
|
144
|
+
careamics/losses/lvae/losses.py,sha256=Bx9oNnFGw9YThVSAn7tznS53_aym1_BPABVcDMH5spY,17943
|
|
145
145
|
careamics/lvae_training/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
|
146
146
|
careamics/lvae_training/calibration.py,sha256=xHbiLcY2csYos3s7rRSqp7P7G-9wzULcSo1JfVzfIjE,7239
|
|
147
147
|
careamics/lvae_training/eval_utils.py,sha256=PWKlG2XrvdfZTG0_brcADaAA0owTeNRT1g673gYtk5k,34410
|
|
@@ -164,18 +164,18 @@ careamics/lvae_training/dataset/utils/empty_patch_fetcher.py,sha256=OFjeqhZ6vFUL
|
|
|
164
164
|
careamics/lvae_training/dataset/utils/index_manager.py,sha256=rihMe5zOfXvPFvM_2paP0EzK4WhaG6RhRFLy8TxnNas,21654
|
|
165
165
|
careamics/lvae_training/dataset/utils/index_switcher.py,sha256=ZoMi8LsaIkm8MFqIFaxN4oQGyzCcwOlCom8SYNus15E,6716
|
|
166
166
|
careamics/model_io/__init__.py,sha256=khMIkk107LL5JGze0OVfl5Lfi14R3_e4W21tW0iJ1kE,155
|
|
167
|
-
careamics/model_io/bmz_io.py,sha256=
|
|
167
|
+
careamics/model_io/bmz_io.py,sha256=XMV-a9btKf1bsC7NP7awoN2hrewSQHRbN8K9G4Sfi8E,7788
|
|
168
168
|
careamics/model_io/model_io_utils.py,sha256=mA8y5ZJ2r5vqA3OCgJqB1wxvCCx37x8Yl7nj1zi3_3U,2750
|
|
169
169
|
careamics/model_io/bioimage/__init__.py,sha256=dKm-UluVwa_7EHQB0ukx-Qk8JVWtuT-OUinY8hE9EIw,298
|
|
170
170
|
careamics/model_io/bioimage/_readme_factory.py,sha256=sRfHbuwhfYmpwsG0keXFCSK3qCS4VI4GQhX6OhSKLjY,3440
|
|
171
171
|
careamics/model_io/bioimage/bioimage_utils.py,sha256=VaDF0XCCcvhvqqNXLIWQI-uny45uPstKyw8e0KdjY1A,1297
|
|
172
172
|
careamics/model_io/bioimage/cover_factory.py,sha256=8URrpEfJvdHBJeSrh5H2IQHSUybsTyAOR3_A-YYAAlw,4583
|
|
173
|
-
careamics/model_io/bioimage/model_description.py,sha256=
|
|
173
|
+
careamics/model_io/bioimage/model_description.py,sha256=gqSZUFlsbaK5RBMyQMfUfYz5AD3LvE9l4bd0sisC_L4,10082
|
|
174
174
|
careamics/models/__init__.py,sha256=Xui2BLJd1I2r_E3Sj24fJALFTi2FGtfNscUWj_0c9Hk,93
|
|
175
175
|
careamics/models/activation.py,sha256=vvoOOuJk_3x8_LsAXl2Utz0r8uRMozFIwgw5GRi0wso,1076
|
|
176
|
-
careamics/models/layers.py,sha256=
|
|
176
|
+
careamics/models/layers.py,sha256=TWUo5MEWPqLxlGs9nJIfyeWH19Yy3MmfKUM0h6QU2WA,13735
|
|
177
177
|
careamics/models/model_factory.py,sha256=GWbouERvEfHj_BrpKHYgrPAj8dpdoh1R-X--Jt09N1Q,1370
|
|
178
|
-
careamics/models/unet.py,sha256=
|
|
178
|
+
careamics/models/unet.py,sha256=f7QT_tHilub9y22RF9rki9ISjS6BYA0fJn5ULwHtVAo,14785
|
|
179
179
|
careamics/models/lvae/__init__.py,sha256=6dT6uqgT__V08EjoTGxXguTbTkySZmByS9J2Bj6WWLM,53
|
|
180
180
|
careamics/models/lvae/layers.py,sha256=UPxZiZjgnBnPs_wdSzcP-_s17MEw4P1CoIZzn4OdUA0,57944
|
|
181
181
|
careamics/models/lvae/likelihoods.py,sha256=qRYRewQv6PqzJO-7nDnFkK86-R8dI4HSp1_ilRSc2I4,12233
|
|
@@ -184,38 +184,38 @@ careamics/models/lvae/noise_models.py,sha256=lpSygXsJmD_erP0V72u9i5CX51wpopLNCH_
|
|
|
184
184
|
careamics/models/lvae/stochastic.py,sha256=wiTrLBSYwOvsF1araKxUHy1CHp1mdH9bazctVo0NchA,16628
|
|
185
185
|
careamics/models/lvae/utils.py,sha256=EE3paHu3vhCaqfOrGypzUsImZJO94uBhx8q6kZ-R36o,11516
|
|
186
186
|
careamics/prediction_utils/__init__.py,sha256=k5hsPGY8FOkwIT0fQgrUz7fVCH2NlwuOdZiISdXjEWg,270
|
|
187
|
-
careamics/prediction_utils/lvae_prediction.py,sha256=
|
|
187
|
+
careamics/prediction_utils/lvae_prediction.py,sha256=B66w0F5GM95yhD68L9Sg1LqgtxgIgi_a_83WlN4fZu4,6188
|
|
188
188
|
careamics/prediction_utils/lvae_tiling_manager.py,sha256=SI-JaJvLrKWBSHdm-FjcqWdbhlcflTRiKxYF7CSGzvA,13736
|
|
189
189
|
careamics/prediction_utils/prediction_outputs.py,sha256=-rjI6pWEy_29nljG9sLGdI-7VaBH4ZBvJQOxB5UAOi4,4070
|
|
190
190
|
careamics/prediction_utils/stitch_prediction.py,sha256=zWpfUPdJWKoJwHDcOjVyDek2YXmfQb3gHDWrkAb5E_I,3907
|
|
191
191
|
careamics/transforms/__init__.py,sha256=n7D3SbcVSRaMOl5F5Rozo2_lY8dn0DH28ywYIdbXxBo,561
|
|
192
|
-
careamics/transforms/compose.py,sha256=
|
|
193
|
-
careamics/transforms/n2v_manipulate.py,sha256=
|
|
194
|
-
careamics/transforms/n2v_manipulate_torch.py,sha256=
|
|
195
|
-
careamics/transforms/normalize.py,sha256=
|
|
196
|
-
careamics/transforms/pixel_manipulation.py,sha256=
|
|
197
|
-
careamics/transforms/pixel_manipulation_torch.py,sha256
|
|
192
|
+
careamics/transforms/compose.py,sha256=8hOfcPDlI9z0kmlsi2QlIyEX3Y7gJxx1typCEdJszq0,5361
|
|
193
|
+
careamics/transforms/n2v_manipulate.py,sha256=pAwGEZW_SFwbbVQGwpfWl6SVIa7slvfSSfve6sIHq_w,5670
|
|
194
|
+
careamics/transforms/n2v_manipulate_torch.py,sha256=F5eWVYLUC87EDPdZVPySWr-05l9SkjiHwZ2vZO_xEks,5114
|
|
195
|
+
careamics/transforms/normalize.py,sha256=Do4oo56rojDzG6gWzWIHYW74OMaReAwwn2_EbtiLEnY,8273
|
|
196
|
+
careamics/transforms/pixel_manipulation.py,sha256=rZTiypq6XSha2aW_UoL5yChP9rNlSauWnmNiaWMi47Y,13346
|
|
197
|
+
careamics/transforms/pixel_manipulation_torch.py,sha256=-X9KM7_e6OBkU0OoypYTNHh13xGbieAZ4sNNlrVy4s8,13892
|
|
198
198
|
careamics/transforms/struct_mask_parameters.py,sha256=jE29Li9sx3olaRnqYfJsSlKi2t0WQzJmCm9aCbIQEsA,421
|
|
199
199
|
careamics/transforms/transform.py,sha256=cEqc4ci8na70i-HIGYC7udRfVa8D_8OjdRVrr3txLvQ,464
|
|
200
200
|
careamics/transforms/tta.py,sha256=78S7Df9rLHmEVSQSI1qDcRrRJGauyG3oaIrXkckCkmw,2335
|
|
201
|
-
careamics/transforms/xy_flip.py,sha256=
|
|
202
|
-
careamics/transforms/xy_random_rotate90.py,sha256=
|
|
201
|
+
careamics/transforms/xy_flip.py,sha256=PlkwWneq5ypLvIcoevZatHMhPXpE2-sTpytziWC1oaw,3804
|
|
202
|
+
careamics/transforms/xy_random_rotate90.py,sha256=o582ktYI2F54OLKZDn4tDMX-aOcD7S955vAHrJvCtNk,3147
|
|
203
203
|
careamics/utils/__init__.py,sha256=mLwBQ7wTL2EwDwL3NcX53EHPNklojU45Jcc728y4EWQ,402
|
|
204
204
|
careamics/utils/autocorrelation.py,sha256=M_WYzrEOQngc5iSXWar4S3-EOnK6DfYHPC2vVMeu_Bs,945
|
|
205
205
|
careamics/utils/base_enum.py,sha256=bz1D8mDx5V5hdnJ3WAzJXWHJTbgwAky5FprUt9F5cMA,1387
|
|
206
206
|
careamics/utils/context.py,sha256=SoTZfzG6fO4SDOGHOTL2Xlm1n1CSgb9B57GVhrEkFls,1436
|
|
207
207
|
careamics/utils/lightning_utils.py,sha256=vAdcRMu0JzXwhdsf8l4eG4daNi1ZtG8D1-u764x2_ho,2067
|
|
208
|
-
careamics/utils/logging.py,sha256=
|
|
209
|
-
careamics/utils/metrics.py,sha256=
|
|
208
|
+
careamics/utils/logging.py,sha256=lSjoXbOTnOjzz70E9NtNVbnPBROn_72s1i9wxwnecOE,10306
|
|
209
|
+
careamics/utils/metrics.py,sha256=Mzqh9m7gkzirevgDEt3UosLjtyzEl3GoFUU_HWMYL-Y,10867
|
|
210
210
|
careamics/utils/path_utils.py,sha256=8AugiG5DOmzgSnTCJI8vypXaPE0XhnR-9pzeiFUZ-0I,554
|
|
211
|
-
careamics/utils/plotting.py,sha256=
|
|
211
|
+
careamics/utils/plotting.py,sha256=muoN3y5JonZOg_kHSCOa06bJt6PH6a0O8gBFw502i9g,2486
|
|
212
212
|
careamics/utils/ram.py,sha256=tksyn8dVX_iJXmrDZDGub32hFZWIaNxnMheO5G1p43I,244
|
|
213
213
|
careamics/utils/receptive_field.py,sha256=Y2h4c8S6glX3qcx5KHDmO17Kkuyey9voxfoXyqcAfiM,3296
|
|
214
214
|
careamics/utils/serializers.py,sha256=mILUhz75IMpGKnEzcYu9hlOPG8YIiIW09fk6eZM7Y8k,1427
|
|
215
215
|
careamics/utils/torch_utils.py,sha256=IUTxKIqYpUTvN-UDZDGBheF7zgtskH_yDcVvYx0p8zI,3478
|
|
216
216
|
careamics/utils/version.py,sha256=WKtMlrNmXymJqzMfguBX558D6tb6aoAZfbABRh_ViIs,1142
|
|
217
|
-
careamics-0.0.
|
|
218
|
-
careamics-0.0.
|
|
219
|
-
careamics-0.0.
|
|
220
|
-
careamics-0.0.
|
|
221
|
-
careamics-0.0.
|
|
217
|
+
careamics-0.0.15.dist-info/METADATA,sha256=1lpIRjfRtM_XPs7eZP-JnV9rYZtRer2XrqK1rykEE84,3911
|
|
218
|
+
careamics-0.0.15.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
|
|
219
|
+
careamics-0.0.15.dist-info/entry_points.txt,sha256=2fSNVXJWDJgFLATVj7MkjFNvpl53amG8tUzC3jf7G1s,53
|
|
220
|
+
careamics-0.0.15.dist-info/licenses/LICENSE,sha256=6zdNW-k_xHRKYWUf9tDI_ZplUciFHyj0g16DYuZ2udw,1509
|
|
221
|
+
careamics-0.0.15.dist-info/RECORD,,
|
|
File without changes
|
|
File without changes
|
|
File without changes
|