careamics 0.0.13__py3-none-any.whl → 0.0.15__py3-none-any.whl

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Files changed (57) hide show
  1. careamics/careamist.py +49 -49
  2. careamics/cli/conf.py +6 -6
  3. careamics/cli/main.py +8 -8
  4. careamics/cli/utils.py +2 -4
  5. careamics/config/algorithms/vae_algorithm_model.py +4 -4
  6. careamics/config/callback_model.py +8 -8
  7. careamics/config/configuration_factories.py +49 -49
  8. careamics/config/data/data_model.py +7 -13
  9. careamics/config/data/ng_data_model.py +8 -14
  10. careamics/config/data/patching_strategies/_overlapping_patched_model.py +4 -5
  11. careamics/config/inference_model.py +6 -10
  12. careamics/config/likelihood_model.py +2 -2
  13. careamics/config/nm_model.py +5 -7
  14. careamics/config/training_model.py +4 -4
  15. careamics/config/transformations/normalize_model.py +3 -3
  16. careamics/config/transformations/xy_flip_model.py +2 -2
  17. careamics/config/transformations/xy_random_rotate90_model.py +2 -2
  18. careamics/config/validators/validator_utils.py +1 -2
  19. careamics/dataset/dataset_utils/iterate_over_files.py +3 -3
  20. careamics/dataset/in_memory_dataset.py +2 -2
  21. careamics/dataset/iterable_dataset.py +1 -2
  22. careamics/dataset/patching/random_patching.py +6 -6
  23. careamics/dataset/patching/sequential_patching.py +4 -4
  24. careamics/dataset/tiling/lvae_tiled_patching.py +2 -2
  25. careamics/dataset_ng/dataset.py +3 -3
  26. careamics/dataset_ng/factory.py +19 -19
  27. careamics/dataset_ng/patching_strategies/random_patching.py +3 -4
  28. careamics/dataset_ng/patching_strategies/sequential_patching.py +1 -2
  29. careamics/lightning/callbacks/prediction_writer_callback/prediction_writer_callback.py +5 -5
  30. careamics/lightning/callbacks/prediction_writer_callback/write_strategy.py +5 -5
  31. careamics/lightning/callbacks/prediction_writer_callback/write_strategy_factory.py +8 -8
  32. careamics/lightning/dataset_ng/data_module.py +43 -43
  33. careamics/lightning/lightning_module.py +12 -14
  34. careamics/lightning/predict_data_module.py +8 -8
  35. careamics/lightning/train_data_module.py +11 -11
  36. careamics/losses/lvae/losses.py +9 -9
  37. careamics/model_io/bioimage/model_description.py +12 -11
  38. careamics/model_io/bmz_io.py +4 -4
  39. careamics/models/layers.py +5 -5
  40. careamics/models/unet.py +16 -10
  41. careamics/prediction_utils/lvae_prediction.py +5 -5
  42. careamics/transforms/compose.py +9 -9
  43. careamics/transforms/n2v_manipulate.py +3 -3
  44. careamics/transforms/n2v_manipulate_torch.py +4 -4
  45. careamics/transforms/normalize.py +4 -6
  46. careamics/transforms/pixel_manipulation.py +6 -8
  47. careamics/transforms/pixel_manipulation_torch.py +5 -7
  48. careamics/transforms/xy_flip.py +3 -5
  49. careamics/transforms/xy_random_rotate90.py +3 -5
  50. careamics/utils/logging.py +8 -8
  51. careamics/utils/metrics.py +2 -2
  52. careamics/utils/plotting.py +1 -3
  53. {careamics-0.0.13.dist-info → careamics-0.0.15.dist-info}/METADATA +2 -3
  54. {careamics-0.0.13.dist-info → careamics-0.0.15.dist-info}/RECORD +57 -57
  55. {careamics-0.0.13.dist-info → careamics-0.0.15.dist-info}/WHEEL +0 -0
  56. {careamics-0.0.13.dist-info → careamics-0.0.15.dist-info}/entry_points.txt +0 -0
  57. {careamics-0.0.13.dist-info → careamics-0.0.15.dist-info}/licenses/LICENSE +0 -0
@@ -1,38 +1,38 @@
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  careamics/__init__.py,sha256=eHsl7oE8HTKmi7yLMj8Yyp0RbdtN3QDmQQb-4Sn9d8M,475
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- careamics/careamist.py,sha256=GhT6Ue3HZGnc0-TIJkR8izgTc3ip3DPO-f0GPJtAthk,38326
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+ careamics/careamist.py,sha256=DeOt9u_EvRtRkzQ9NzBoyMxSNb8vO1tFHVwopI_37TY,38172
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  careamics/conftest.py,sha256=Od4WcaaP0UP-XUMrFr_oo4e6c2hi_RvNbuaRTopwlmI,911
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  careamics/py.typed,sha256=esB4cHc6c07uVkGtqf8at7ttEnprwRxwk8obY8Qumq4,187
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  careamics/cli/__init__.py,sha256=LbM9bVtU1dy-khmdiIDXwvKy2v8wPBCEUuWqV_8rosA,106
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- careamics/cli/conf.py,sha256=oixGRZNylW-NTM_rkDtQkSRw8KUYwtmUC_hK5BEeLnA,13074
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- careamics/cli/main.py,sha256=S4B3c1ZN-OQK0l2_W42CaW0KmF_Pe_y4pKgn_UOuyDg,6564
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- careamics/cli/utils.py,sha256=ESeKm86je_6dzJNNEMI6LHYkHEMff0OMvzP5bnxotYk,661
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+ careamics/cli/conf.py,sha256=ePp0hxcP3vUQWr5m2bgsxNBw7sS6eMu8F6pGhV8TvAU,13049
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+ careamics/cli/main.py,sha256=21UcqLOP0tM7x25pslw0zRAfJMMEZEzG1xeJZI-QfN0,6533
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+ careamics/cli/utils.py,sha256=DJvHKpZB6LSSnABKxK6i15ITAyIdyaiAnSdpBPZhuuk,626
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  careamics/config/__init__.py,sha256=K0N1GIqFCYhpPjalZG-Ygap6Ew_dDAC0uw5Npzhg9Lk,1524
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- careamics/config/callback_model.py,sha256=YRXE-qgnTrI-KInYQK4UwxC55ttY6eg_eb1wvrGhCDU,4096
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+ careamics/config/callback_model.py,sha256=lxytx4rwqOI-UxW8eHTdfLE3K4eIlg907w4Xk9Nul7Y,4065
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  careamics/config/configuration.py,sha256=gNBKxeHqAQLa8_btGuQ4-X4987cRPr5L6RI6hOv179Q,13345
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- careamics/config/configuration_factories.py,sha256=lg3tG4LYzMsanoiD_c2jX2hY50fXIk1d6ALsRTny1uM,46113
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+ careamics/config/configuration_factories.py,sha256=P_VWHOJEjW-s_yAOKul9TV41yufsQLzRyCPSKJrjUjc,45959
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  careamics/config/configuration_io.py,sha256=P-bP1kzkXxJWOEFP02dEZFNmpuLAPJfJtYhX4bFeaKk,2324
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- careamics/config/inference_model.py,sha256=NEgRN-VZulMKNwY42fecnK0shLh75xVnrY-odMJpwHA,7034
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- careamics/config/likelihood_model.py,sha256=VorUtc0_-xIWNxwVrd1kBba-003ICdVMtxpcDCxH4Io,2259
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+ careamics/config/inference_model.py,sha256=OiNLR4srvbaNcsvA5_Zwc3tqr7yQAXXeSxm5aAEpySM,6978
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+ careamics/config/likelihood_model.py,sha256=mxyhEHC6wS02t5lqFE3l-8N1DpzrTqEiQSswEy3DJgs,2246
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  careamics/config/loss_model.py,sha256=yYcUBS90Qyon1MxeaHiVP3dJHPJFC0GUvWKGcAb3IHk,2036
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- careamics/config/nm_model.py,sha256=5dAhDBLa4WPfKaNEK6ATNsSUwtlH8u8gYweEA4gZP6g,4758
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+ careamics/config/nm_model.py,sha256=M_YE2fiYgJT1pGF7JpzhDvgTnd8CP6DxZXIjxG9q5Qg,4722
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  careamics/config/optimizer_models.py,sha256=9qxcLjtDp5LjYX52u21Rom4F3_GZUV2GJimrK3un574,5717
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  careamics/config/tile_information.py,sha256=c-_xrVPOgcnjiEzQ-9A_GhNPamObkMANbeHaRP29R-4,2059
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- careamics/config/training_model.py,sha256=VfK2bk_1FHaamKZw5S8UDPVxasyUqz1rY1ahcaxYZ7s,3114
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+ careamics/config/training_model.py,sha256=6XvXMIT2H8vxyGfb9L4cSRqpmlurBPeyWYS6RYhDZaA,3095
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  careamics/config/algorithms/__init__.py,sha256=on5D6zBO9Lu-Tf5To8xpF6owIFqdN7RSmZdpyXDOaNw,404
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  careamics/config/algorithms/care_algorithm_model.py,sha256=ncf89BC2aFPFSquJ65-Y7NpwVbvgPE0BKH6Up1OHa1s,3238
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  careamics/config/algorithms/n2n_algorithm_model.py,sha256=OZbRis9jhRKWNK1-Z_aw2tfJRuGdlJiYEYlH4Hr1FRs,3066
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  careamics/config/algorithms/n2v_algorithm_model.py,sha256=IkHsTj-IkWq--mlWjBHfH18CGK_3p2uaC3Zz2tfieaA,9469
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  careamics/config/algorithms/unet_algorithm_model.py,sha256=OaBFVlhsb9YhF3f2x1ImazvfnZ4_DPWvYWihRwurkeg,2587
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- careamics/config/algorithms/vae_algorithm_model.py,sha256=1ZrShUGHA7zbjSiCQwhUSv7l7Hr7MbpcLOw8ucM27p8,4680
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+ careamics/config/algorithms/vae_algorithm_model.py,sha256=JFHWtoLEKt0PthJYiDq3TfBl7fJudODUvtCyTeFZvvg,4661
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  careamics/config/architectures/__init__.py,sha256=lYUz56R7LDqVQWQDLkLgJL8VtOyxc_ege1r4bXGEBqA,220
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  careamics/config/architectures/architecture_model.py,sha256=gXn4gdLrQP3bmTQxIhzkEHYlodPaIp6LI-kwZl23W-Y,911
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  careamics/config/architectures/lvae_model.py,sha256=lwOiJYNUqPrZFl9SpPLYon77EiRbe2eI7pmpx45rO78,7606
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  careamics/config/architectures/unet_model.py,sha256=Aqc_KPf2VKMhNrYwOdmr_ez3iIQz8ZRtsA6t5FFT354,3686
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  careamics/config/data/__init__.py,sha256=YS04_USNswKL7kpSn_6BeTvhobAiUVst46_SlCztCxs,171
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- careamics/config/data/data_model.py,sha256=d_7_bDdLCzl0HgykpObbBYM1-NLBycJ5iOXN1JYS2SI,13444
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- careamics/config/data/ng_data_model.py,sha256=DKmNY84KQLwFsLem3RZJBJYq54FdSfQYlI3NnXhIsTQ,12317
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+ careamics/config/data/data_model.py,sha256=4zqLKfH1dhOl7CDHvIANrfSbJnUhnkfrCvAJF5F7MdQ,13374
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+ careamics/config/data/ng_data_model.py,sha256=0RSUvSMoIVcQY4a1drCMHMcOBp15xHchtnEk-nUiTvU,12244
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  careamics/config/data/patching_strategies/__init__.py,sha256=6ZUors-WzBBQCwMyaSojYJzdXeleFRBlrFls1r-Otdo,394
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- careamics/config/data/patching_strategies/_overlapping_patched_model.py,sha256=Qyz4qlFzhZ6e-1aPlV89heKINIaoHfVIBO3dCTyBbOE,3073
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+ careamics/config/data/patching_strategies/_overlapping_patched_model.py,sha256=ysGd8QNNdNzLD6NITmvyjVETG6ohhEFLgWPCS_CYSxE,3030
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  careamics/config/data/patching_strategies/random_patching_model.py,sha256=HZfPLkkhwYNQ11O-ahmoaE1bTw7rXg2mIIqsBNkY4WE,533
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  careamics/config/data/patching_strategies/sequential_patching_model.py,sha256=sS1h-sHUGvlh41b4kc_3B858ZCPDMJlPb6roAhDL63Y,865
@@ -52,39 +52,39 @@ careamics/config/support/supported_struct_axis.py,sha256=alZMA5Y-BpDymLPUEd1zqVY
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  careamics/config/support/supported_transforms.py,sha256=ylTiS8fUFKFwfn85gh7kKF4Trb9Q4ENPKm-XDWCe-SY,311
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  careamics/config/transformations/__init__.py,sha256=6THr9oNI06umw_cchXW9sCeBLpFIcJfGC4hdq3WvUsI,577
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- careamics/config/transformations/normalize_model.py,sha256=1Rkk6IkF-7ytGU6HSzP-TpOi4RRWiQJ6fOd8zammXcg,1936
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+ careamics/config/transformations/normalize_model.py,sha256=_gQmUTlrPlMx5fptoZbB0Ov7PdJQoeDAw81XMCtQRr4,1920
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  careamics/config/transformations/transform_model.py,sha256=6UVbXnxm-LLZOQQ-ZBwWwgmS_99DiBuERLfMxrta3-8,990
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- careamics/config/transformations/xy_flip_model.py,sha256=zU-uZ1b1zNZWckbho3onN-B7BHKhN7jbgbNZyRQhv2s,1025
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- careamics/config/transformations/xy_random_rotate90_model.py,sha256=6sYKmtCLvz0SV1qZgBSHUTH-CUjwvHnohq1HyPntbyE,894
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+ careamics/config/transformations/xy_flip_model.py,sha256=2k4tiUZK3GVn9hEjFlWi0ypz-k5C2XKKO6elU7HlKmI,1012
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+ careamics/config/transformations/xy_random_rotate90_model.py,sha256=Z0vhD9Hal_rpwWHlOA53ADDcUrrApESzZBa50HD7gRc,881
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  careamics/config/validators/__init__.py,sha256=zRrIse0O3ImwG97NphEupFVm3Ib9nEJhpNNrKGyDTps,423
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  careamics/config/validators/model_validators.py,sha256=9OCdlf7rmndtTpmQ8COLaEjURYYmszic_RjY9mzS-k4,1941
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- careamics/config/validators/validator_utils.py,sha256=7wBQzf4YcxiL0h9yOEaFM4RoeOtLPEBp4W7ZVabfqBA,2609
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+ careamics/config/validators/validator_utils.py,sha256=NUmH_NheVwbx3rQi_pKTjMqX-_k89UIAlKBc7RlQLls,2578
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- careamics/dataset/in_memory_dataset.py,sha256=INiamRPZGKf0yWIyLds1ZQlBiK4A86XVijOJ65BSH1A,9692
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+ careamics/dataset/in_memory_dataset.py,sha256=Grt9w4QuhJrTbcHmEJeifmTm06-U09M-6FGyaFw_UXU,9679
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- careamics/dataset/iterable_dataset.py,sha256=ZBiQh96TgThcOB0flRGZmh0arFn30fX3shAafvetq3s,9783
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+ careamics/dataset/iterable_dataset.py,sha256=xDt2985m-K1P5G2EaNHOHg54-fjRI6MfZTdNB4NdSJI,9752
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- careamics/dataset/dataset_utils/iterate_over_files.py,sha256=xQJZQhusFiI3oPJmSsL8fFBVVRA3WS8R1TcAXW-xfdE,2898
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+ careamics/dataset/dataset_utils/iterate_over_files.py,sha256=mVY1PAnLQn-xr8PDfXspiPrsv0k6o8ypor6_1MB59_k,2882
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  careamics/dataset/patching/__init__.py,sha256=7-s12oUAZNlMOwSkxSwbD7vojQINWYFzn_4qIJ87WBg,37
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- careamics/dataset/patching/random_patching.py,sha256=gm1jxye9yvHbdijLzCtDSzRU_9j110GRLMnJaUwLAHQ,6487
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- careamics/dataset/patching/sequential_patching.py,sha256=4F5E1Ta0M5kFXGwI2-QXRxeOx0CyUwbFaB5awkMCN_Q,5890
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+ careamics/dataset/patching/random_patching.py,sha256=8ZrC5CygBLnA4e1yXJg4XT3RnsIeN9PMzuTRkO_wPo8,6462
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+ careamics/dataset/patching/sequential_patching.py,sha256=Dg5C57hO7BqnKP2sJh2xylupzmuV2lvTs4vYe5KTH-Q,5871
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- careamics/dataset/tiling/lvae_tiled_patching.py,sha256=rGcUOOL0nC5zv22RLn_WiLV9cxrqCwZc-btJ6zrtAy8,13223
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+ careamics/dataset/tiling/lvae_tiled_patching.py,sha256=2oOXnVsZ_L2jtA02Jw7bLfkugZ2ZO8lF105cjxGADoY,13210
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- careamics/dataset_ng/dataset.py,sha256=ZrFnB4Xj3mWDYQyP2yMoazRnKs8wrkJYL28pHsOC8Yc,8826
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- careamics/dataset_ng/factory.py,sha256=lPh61FIkvXdqW5nH68d5Jvn4vg8wxB7bNmTCvea1_2Q,14787
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+ careamics/dataset_ng/dataset.py,sha256=2R7jMUJFBECI-MBROg4QhGM3vJ8EEIpwOMDoBYEQhN8,8810
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+ careamics/dataset_ng/factory.py,sha256=bjzolF1k9iTj6cY75licyGYielZZvpp3xJwLbw8t5uU,14723
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- careamics/dataset_ng/patching_strategies/random_patching.py,sha256=uUqkCOSmbq1r54LcobtivHpUtpH4WhnTFpN2Y17dIFk,13525
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- careamics/dataset_ng/patching_strategies/sequential_patching.py,sha256=T65DszwUmCvLBZXbMmTYYWFn702tuECkPKJ_x8ps00A,2491
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+ careamics/dataset_ng/patching_strategies/random_patching.py,sha256=0qEhUgANJAuhnVYeCiCaiW1gwLWOGAIIFcvriW0_byM,13490
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+ careamics/dataset_ng/patching_strategies/sequential_patching.py,sha256=Qsqqf8D_2SxSRgrhYMpD0VgmAqHX-jiw-wRvDfwTYHA,2460
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+ careamics/utils/logging.py,sha256=lSjoXbOTnOjzz70E9NtNVbnPBROn_72s1i9wxwnecOE,10306
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- careamics-0.0.13.dist-info/RECORD,,
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+ careamics-0.0.15.dist-info/RECORD,,