cardiac-geometriesx 0.5.3__py3-none-any.whl → 0.5.5__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.

This version of cardiac-geometriesx might be problematic. Click here for more details.

Files changed (8) hide show
  1. cardiac_geometries/fibers/utils.py +7 -1
  2. cardiac_geometries/mesh.py +1 -1
  3. {cardiac_geometriesx-0.5.3.dist-info → cardiac_geometriesx-0.5.5.dist-info}/METADATA +1 -1
  4. {cardiac_geometriesx-0.5.3.dist-info → cardiac_geometriesx-0.5.5.dist-info}/RECORD +8 -8
  5. {cardiac_geometriesx-0.5.3.dist-info → cardiac_geometriesx-0.5.5.dist-info}/WHEEL +0 -0
  6. {cardiac_geometriesx-0.5.3.dist-info → cardiac_geometriesx-0.5.5.dist-info}/entry_points.txt +0 -0
  7. {cardiac_geometriesx-0.5.3.dist-info → cardiac_geometriesx-0.5.5.dist-info}/licenses/LICENSE +0 -0
  8. {cardiac_geometriesx-0.5.3.dist-info → cardiac_geometriesx-0.5.5.dist-info}/top_level.txt +0 -0
cardiac_geometries/fibers/utils.py CHANGED
@@ -104,7 +104,13 @@ def laplace(
104
104
 
105
105
  bcs = [endo_bc, epi_bc]
106
106
 
107
- problem = LinearProblem(a, L, bcs=bcs, petsc_options={"ksp_type": "preonly", "pc_type": "lu"})
107
+ kwargs = {}
108
+ if _dolfinx_version >= Version("0.10"):
109
+ kwargs["petsc_options_prefix"] = "cardiac_geometriesx_laplace"
110
+
111
+ problem = LinearProblem(
112
+ a, L, bcs=bcs, petsc_options={"ksp_type": "preonly", "pc_type": "lu"}, **kwargs
113
+ )
108
114
  uh = problem.solve()
109
115
 
110
116
  if function_space != "P_1":
cardiac_geometries/mesh.py CHANGED
@@ -117,7 +117,7 @@ def ukb(
117
117
  if comm.rank == 0:
118
118
  surf_args = ["surf", str(outdir), "--mode", str(mode), "--std", str(std), "--case", case]
119
119
  if use_burns:
120
- surf_args.extend(["--use_burns", "--burns_path", str(burns_path)])
120
+ surf_args.extend(["--use-burns", "--burns-path", str(burns_path)])
121
121
 
122
122
  ukb.cli.main(surf_args)
123
123
  mesh_args = [
{cardiac_geometriesx-0.5.3.dist-info → cardiac_geometriesx-0.5.5.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: cardiac-geometriesx
3
- Version: 0.5.3
3
+ Version: 0.5.5
4
4
  Summary: A python library for cardiac geometries
5
5
  Author-email: Henrik Finsberg <henriknf@simula.no>
6
6
  License: MIT
{cardiac_geometriesx-0.5.3.dist-info → cardiac_geometriesx-0.5.5.dist-info}/RECORD RENAMED
@@ -2,16 +2,16 @@ cardiac_geometries/__init__.py,sha256=2W_ywAeLjyRk5MqSPAodHa4UN2lOnW1h8tmGLQ3gaJ
2
2
  cardiac_geometries/cli.py,sha256=bJ0ICY2KRCVBYxhTrMg66PbqSXrThMWwzQ61dJQgJo0,24018
3
3
  cardiac_geometries/geometry.py,sha256=b-JbxV1wTgrjgQaNNG4NiGmXLs3nqRabsUUtYDnyKKA,13616
4
4
  cardiac_geometries/gui.py,sha256=9WYR850wLrqsUrVUC37E2SaO0OWA_oagSe-YNrsxz3k,8376
5
- cardiac_geometries/mesh.py,sha256=YLSlT1lJSw8ySNSyKr8vdbMArwON_uymer53lybF4j4,39199
5
+ cardiac_geometries/mesh.py,sha256=3fiCZP2mdgx5HIFUlWciVAMHUPBh6aFqx7mSJV6Jvpw,39199
6
6
  cardiac_geometries/utils.py,sha256=6H0tZif7GPINdrxfPm3HQH1T4_DfDvWMejjpXPb8mLY,22206
7
7
  cardiac_geometries/fibers/__init__.py,sha256=iggELqJBQySc6ihph1-yaweOfxNvvTE2670RnUnOgDw,2229
8
8
  cardiac_geometries/fibers/cylinder.py,sha256=Q1GIuVvntPQ7pW6Z4UYSC8-8WfkClbakiW81Fl9dvk0,3345
9
9
  cardiac_geometries/fibers/lv_ellipsoid.py,sha256=KMVOHg2VPg1tF2R9TKIX-vQr6dDM4HThh12WW_diNfU,6024
10
10
  cardiac_geometries/fibers/slab.py,sha256=IbyWyB4sFSa8Yo0gc4eiC9AXZtB5QB2Tm_IvdRZKg0o,3904
11
- cardiac_geometries/fibers/utils.py,sha256=v4vmB-2FM0JU-7Oy7Q3FRSuvDEXPCm5mWHi8CRxfxn8,3696
12
- cardiac_geometriesx-0.5.3.dist-info/licenses/LICENSE,sha256=lo5K2rJPZOSv6luutGHbzzi3IpXNaB9E2UWq60qvNx0,1111
13
- cardiac_geometriesx-0.5.3.dist-info/METADATA,sha256=AYgpMoysb5JDcotfHSeFAbiufEvr51FcmQ6i6TfDF3s,4384
14
- cardiac_geometriesx-0.5.3.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
15
- cardiac_geometriesx-0.5.3.dist-info/entry_points.txt,sha256=xOBnlc6W-H9oCDYLNz3kpki26OmpfYSoFSrmi_4V-Ec,52
16
- cardiac_geometriesx-0.5.3.dist-info/top_level.txt,sha256=J0gQxkWR2my5Vf7Qt8buDY8ZOjYdVfIweVunCGXWKNE,19
17
- cardiac_geometriesx-0.5.3.dist-info/RECORD,,
11
+ cardiac_geometries/fibers/utils.py,sha256=Uy0xWpQXNpOLqCYaSFmJ2rKcCeP3lXCLlQnZR1S2KKQ,3852
12
+ cardiac_geometriesx-0.5.5.dist-info/licenses/LICENSE,sha256=lo5K2rJPZOSv6luutGHbzzi3IpXNaB9E2UWq60qvNx0,1111
13
+ cardiac_geometriesx-0.5.5.dist-info/METADATA,sha256=Y0VJRaGO3GP97CvYYQ3yheEVfuRNmkL948uPpWuf_F8,4384
14
+ cardiac_geometriesx-0.5.5.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
15
+ cardiac_geometriesx-0.5.5.dist-info/entry_points.txt,sha256=xOBnlc6W-H9oCDYLNz3kpki26OmpfYSoFSrmi_4V-Ec,52
16
+ cardiac_geometriesx-0.5.5.dist-info/top_level.txt,sha256=J0gQxkWR2my5Vf7Qt8buDY8ZOjYdVfIweVunCGXWKNE,19
17
+ cardiac_geometriesx-0.5.5.dist-info/RECORD,,