cardiac-geometriesx 0.1.1__py3-none-any.whl → 0.1.2__py3-none-any.whl

cardiac_geometries/fibers/lv_ellipsoid.py

@@ -131,9 +131,11 @@ def create_microstructure(
     )
 
     if outdir is not None:
-        with dolfinx.io.XDMFFile(mesh.comm, Path(outdir) / "laplace.xdmf", "w") as file:
-            file.write_mesh(mesh)
-            file.write_function(t)
+        with dolfinx.io.VTXWriter(
+            mesh.comm, Path(outdir) / "laplace.bp", [t], engine="BP4"
+        ) as file:
+            file.write(0.0)
+
     system = compute_system(
         t,
         function_space=function_space,

cardiac_geometries/fibers/slab.py

@@ -134,9 +134,10 @@ def create_microstructure(
         function_space=function_space,
     )
     if outdir is not None:
-        with dolfinx.io.XDMFFile(mesh.comm, Path(outdir) / "laplace.xdmf", "w") as file:
-            file.write_mesh(mesh)
-            file.write_function(t)
+        with dolfinx.io.VTXWriter(
+            mesh.comm, Path(outdir) / "laplace.bp", [t], engine="BP4"
+        ) as file:
+            file.write(0.0)
 
     system = compute_system(
         t,

cardiac_geometries/fibers/utils.py

@@ -20,9 +20,11 @@ def save_microstructure(
     from ..utils import element2array
 
     # Save for paraview visualization
-    with dolfinx.io.VTXWriter(mesh.comm, Path(outdir) / "microstructure-viz.bp", functions, engine="BP4") as file:
+    with dolfinx.io.VTXWriter(
+        mesh.comm, Path(outdir) / "microstructure-viz.bp", functions, engine="BP4"
+    ) as file:
         file.write(0.0)
-        
+
     # Save with proper function space
     filename = Path(outdir) / "microstructure.bp"
     for function in functions:

cardiac_geometries/geometry.py

@@ -12,7 +12,7 @@ import numpy as np
 from . import utils
 
 
-@dataclass#(frozen=True, slots=True)
+@dataclass  # (frozen=True, slots=True)
 class Geometry:
     mesh: dolfinx.mesh.Mesh
     markers: dict[str, tuple[str, str]] = field(default_factory=dict)

{cardiac_geometriesx-0.1.1.dist-info → cardiac_geometriesx-0.1.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: cardiac-geometriesx
-Version: 0.1.1
+Version: 0.1.2
 Summary: A python library for cardiac geometries
 Author-email: Henrik Finsberg <henriknf@simula.no>
 License: MIT

cardiac_geometriesx-0.1.2.dist-info/RECORD

@@ -0,0 +1,14 @@
+cardiac_geometries/__init__.py,sha256=2W_ywAeLjyRk5MqSPAodHa4UN2lOnW1h8tmGLQ3gaJ0,150
+cardiac_geometries/cli.py,sha256=2-99xmcBltdotzxp4aDZLrh46gyA5U_PZc6lHen7LIM,19323
+cardiac_geometries/geometry.py,sha256=fxya6HDCe3MtdEcrRgygOfbj5yg10tNWA6HhObamcUY,4659
+cardiac_geometries/mesh.py,sha256=cJAcwdDaYmO8MlfocaxvV6pkBcfEWybMSBAaycr6q3s,25987
+cardiac_geometries/utils.py,sha256=-fH13vimCYrirDZubQdxRpX-7I9iCFsOJ8Xo1NL5Nvc,3596
+cardiac_geometries/fibers/__init__.py,sha256=WpRrn9Iakl-3m8IGtFkqP0LXGjw5EZHZ8Eg9JCnCdrg,137
+cardiac_geometries/fibers/lv_ellipsoid.py,sha256=jdRek3v_V2a9IQHqH7P-lK0JBwa1dUNpBBmABzKGje4,3690
+cardiac_geometries/fibers/slab.py,sha256=h_iVs_e1F9LJaXJOzam336f0LcTAXXBvApsFZGZSnZs,3861
+cardiac_geometries/fibers/utils.py,sha256=hMTAKy32ow10tpNE1-WuvCYk7PVXO1qL0dHPa3LjecQ,2434
+cardiac_geometriesx-0.1.2.dist-info/METADATA,sha256=j68EaXmIA9r9PFIGGwjigAGekqalX1c44A_6GyZ5KDw,1349
+cardiac_geometriesx-0.1.2.dist-info/WHEEL,sha256=cpQTJ5IWu9CdaPViMhC9YzF8gZuS5-vlfoFihTBC86A,91
+cardiac_geometriesx-0.1.2.dist-info/entry_points.txt,sha256=xOBnlc6W-H9oCDYLNz3kpki26OmpfYSoFSrmi_4V-Ec,52
+cardiac_geometriesx-0.1.2.dist-info/top_level.txt,sha256=J0gQxkWR2my5Vf7Qt8buDY8ZOjYdVfIweVunCGXWKNE,19
+cardiac_geometriesx-0.1.2.dist-info/RECORD,,

cardiac_geometriesx-0.1.1.dist-info/RECORD

@@ -1,14 +0,0 @@
-cardiac_geometries/__init__.py,sha256=2W_ywAeLjyRk5MqSPAodHa4UN2lOnW1h8tmGLQ3gaJ0,150
-cardiac_geometries/cli.py,sha256=2-99xmcBltdotzxp4aDZLrh46gyA5U_PZc6lHen7LIM,19323
-cardiac_geometries/geometry.py,sha256=rhtq219q06ta1ZS_WIyqfjr00rN1L099bfX_Fwhe29g,4656
-cardiac_geometries/mesh.py,sha256=cJAcwdDaYmO8MlfocaxvV6pkBcfEWybMSBAaycr6q3s,25987
-cardiac_geometries/utils.py,sha256=-fH13vimCYrirDZubQdxRpX-7I9iCFsOJ8Xo1NL5Nvc,3596
-cardiac_geometries/fibers/__init__.py,sha256=WpRrn9Iakl-3m8IGtFkqP0LXGjw5EZHZ8Eg9JCnCdrg,137
-cardiac_geometries/fibers/lv_ellipsoid.py,sha256=zcCTcst08-xcG5c2j8rPLFp0cgNjXt1Q0mVGhs5r5Ps,3695
-cardiac_geometries/fibers/slab.py,sha256=-EWG4cHjtFYo4VyoFfVnsbHhfdf8qKWphYimJ1jB56o,3867
-cardiac_geometries/fibers/utils.py,sha256=K_C_G1az_SnwBAeKvvvZN4V4M_6z0DAAqOsV7M3T5aI,2428
-cardiac_geometriesx-0.1.1.dist-info/METADATA,sha256=w_cEg_5ZBV2Ptl9OxH2VN4Psll0wjlLU0WTR4GIaB8o,1349
-cardiac_geometriesx-0.1.1.dist-info/WHEEL,sha256=cpQTJ5IWu9CdaPViMhC9YzF8gZuS5-vlfoFihTBC86A,91
-cardiac_geometriesx-0.1.1.dist-info/entry_points.txt,sha256=xOBnlc6W-H9oCDYLNz3kpki26OmpfYSoFSrmi_4V-Ec,52
-cardiac_geometriesx-0.1.1.dist-info/top_level.txt,sha256=J0gQxkWR2my5Vf7Qt8buDY8ZOjYdVfIweVunCGXWKNE,19
-cardiac_geometriesx-0.1.1.dist-info/RECORD,,