cap-anndata 0.1.0__py3-none-any.whl → 0.1.1__py3-none-any.whl

cap_anndata/cap_anndata.py

@@ -68,7 +68,7 @@ class CapAnnData:
         if raw:
             # Check if raw exists first
             if "raw" not in self._file.keys():
-                logger.debug("Can't read raw.var since raw layer doesn't exist!")
+                logger.warning("Can't read raw.var since raw layer doesn't exist!")
                 return
 
             if self._raw is None:
@@ -97,6 +97,10 @@ class CapAnnData:
 
             for col in cols_to_read:
                 df[col] = read_elem(h5_group[col])
+        if df.column_order.dtype != object:
+            # empty DataFrame will have column_order as float64
+            # which leads to failure in overwrite method
+            df.column_order = df.column_order.astype(object)
         return df
 
     @staticmethod
@@ -190,7 +194,6 @@ class CapAnnData:
                 else:
                     # sparse array
                     self._obsm[entity_name] = ad.experimental.sparse_dataset(entity)
-        logger.debug(f"obsm={self._obsm}")
 
     def obsm_keys(self) -> List[str]:
         return list(self.obsm.keys())

{cap_anndata-0.1.0.dist-info → cap_anndata-0.1.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: cap_anndata
-Version: 0.1.0
+Version: 0.1.1
 Summary: Partial read of AnnData files for low-memory operations with large datasets.
 Home-page: https://github.com/cellannotation/cap-anndata
 Author: R. Mukhin, A. Isaev

cap_anndata-0.1.1.dist-info/RECORD

@@ -0,0 +1,9 @@
+cap_anndata/__init__.py,sha256=4Vex9i79uTgNQZo_yiEuNc0KoLXPs5Awv87KWmDbxzM,143
+cap_anndata/backed_df.py,sha256=Ce74WHzXhebYRORx7yjVJD02XCcF5j1SxvmbTIpwzCA,1418
+cap_anndata/backed_uns.py,sha256=Tfxoz3RgcgENf4SvxFOox9w048K2QmBTh1VbAf4yqVI,854
+cap_anndata/cap_anndata.py,sha256=4mpsJjEgrmJGSVaY0cYp_mM6CTquI9NC-oYXbZxUjH4,7815
+cap_anndata-0.1.1.dist-info/LICENSE,sha256=JAV0w7TBl6wQe9iFcCKjAWgpurym0f-Q0B75zm2PrKw,1560
+cap_anndata-0.1.1.dist-info/METADATA,sha256=7xIKTN7cO4jbenuUTXEXJcJUCFJZwwZPN7VvE5Fp7EE,7123
+cap_anndata-0.1.1.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
+cap_anndata-0.1.1.dist-info/top_level.txt,sha256=GKi_Uk4LUhXwWBfFCTIyJvEoJqFREt_4uH4CWgeLsg4,12
+cap_anndata-0.1.1.dist-info/RECORD,,

cap_anndata-0.1.0.dist-info/RECORD

@@ -1,9 +0,0 @@
-cap_anndata/__init__.py,sha256=4Vex9i79uTgNQZo_yiEuNc0KoLXPs5Awv87KWmDbxzM,143
-cap_anndata/backed_df.py,sha256=Ce74WHzXhebYRORx7yjVJD02XCcF5j1SxvmbTIpwzCA,1418
-cap_anndata/backed_uns.py,sha256=Tfxoz3RgcgENf4SvxFOox9w048K2QmBTh1VbAf4yqVI,854
-cap_anndata/cap_anndata.py,sha256=VyIOKU9U7vR65_tB75DsFCb_EkYw7DgiA43cAk-ouOQ,7627
-cap_anndata-0.1.0.dist-info/LICENSE,sha256=JAV0w7TBl6wQe9iFcCKjAWgpurym0f-Q0B75zm2PrKw,1560
-cap_anndata-0.1.0.dist-info/METADATA,sha256=8iPDHNrN8fUdLd512yWzZdVrwED-IXjUwASFXq3IlEk,7123
-cap_anndata-0.1.0.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
-cap_anndata-0.1.0.dist-info/top_level.txt,sha256=GKi_Uk4LUhXwWBfFCTIyJvEoJqFREt_4uH4CWgeLsg4,12
-cap_anndata-0.1.0.dist-info/RECORD,,