canvas 0.1.15__py3-none-any.whl → 0.2.10__py3-none-any.whl

canvas_sdk/value_set/v2022/symptom.py

@@ -0,0 +1,176 @@
+from ..value_set import ValueSet
+
+
+class FrailtySymptom(ValueSet):
+    """
+    **Clinical Focus:** The purpose of this value set is to represent concepts for symptoms of frailty.
+
+    **Data Element Scope:** This value set may use a model element related to Symptom.
+
+    **Inclusion Criteria:** Includes concepts that represent a symptom of frailty.
+
+    **Exclusion Criteria:** No exclusions.
+
+    ** Used in:** CMS134v10, CMS165v10, CMS131v10, CMS122v10, CMS125v10, CMS130v10
+    """
+
+    VALUE_SET_NAME = "Frailty Symptom"
+    OID = "2.16.840.1.113883.3.464.1003.113.12.1075"
+    DEFINITION_VERSION = "20190315"
+    EXPANSION_VERSION = "eCQM Update 2021-05-06"
+
+    ICD10CM = {
+        "R260",  # Ataxic gait
+        "R261",  # Paralytic gait
+        "R262",  # Difficulty in walking, not elsewhere classified
+        "R2689",  # Other abnormalities of gait and mobility
+        "R269",  # Unspecified abnormalities of gait and mobility
+        "R4181",  # Age-related cognitive decline
+        "R531",  # Weakness
+        "R5381",  # Other malaise
+        "R5383",  # Other fatigue
+        "R54",  # Age-related physical debility
+        "R627",  # Adult failure to thrive
+        "R634",  # Abnormal weight loss
+        "R636",  # Underweight
+        "R64",  # Cachexia
+    }
+    SNOMEDCT = {
+        "4468000",  # Oppenheim's gait (finding)
+        "8510008",  # Reduced mobility (finding)
+        "13791008",  # Asthenia (finding)
+        "18726006",  # Senile asthenia (finding)
+        "20940004",  # Spinal hemiparesis (finding)
+        "22090007",  # Scissoring gait (finding)
+        "22325002",  # Abnormal gait (finding)
+        "22631008",  # Unsteady when walking (finding)
+        "23042008",  # Spinal paraparesis (finding)
+        "25136009",  # Ataxic gait (finding)
+        "26544005",  # Muscle weakness (finding)
+        "41786007",  # Neurological muscle weakness (finding)
+        "43005009",  # Shuffling gait (finding)
+        "50314001",  # Partial bilateral paresis (finding)
+        "67141003",  # Antalgic gait (finding)
+        "78119002",  # Complete bilateral paresis (finding)
+        "78691002",  # Staggering gait (finding)
+        "84229001",  # Fatigue (finding)
+        "89362005",  # Weight loss (finding)
+        "102492002",  # Failure to maintain weight (finding)
+        "102568007",  # Paresis of lower extremity (finding)
+        "102891000",  # Age-related cognitive decline (finding)
+        "105501005",  # Dependence on enabling machine or device (finding)
+        "105503008",  # Dependence on wheelchair (finding)
+        "105504002",  # Dependence on walking stick (finding)
+        "126013009",  # Subjective muscle weakness (finding)
+        "127378008",  # Bilateral paresis (finding)
+        "135834002",  # Pseudoparalysis (finding)
+        "160681005",  # Mobile outside with aid (finding)
+        "160683008",  # Needs walking aid in home (finding)
+        "160684002",  # Confined to chair (finding)
+        "160685001",  # Bed-ridden (finding)
+        "160692006",  # Mobility very poor (finding)
+        "160693001",  # Mobility poor (finding)
+        "160734000",  # Lives in a nursing home (finding)
+        "160737007",  # Lives in an old peoples home (finding)
+        "161832001",  # Weight decreasing (finding)
+        "161873000",  # Heavy legs (finding)
+        "161874006",  # Heavy feeling (finding)
+        "162236007",  # Weakness present (finding)
+        "162239000",  # Abdominal weakness (finding)
+        "163600007",  # On examination - paresis (weakness) (finding)
+        "163686004",  # On examination - gait ataxic (finding)
+        "163695007",  # On examination - muscle power reduced (finding)
+        "165243005",  # Independent in wheelchair (finding)
+        "165244004",  # Minimal help in wheelchair (finding)
+        "224960004",  # Tired (finding)
+        "225612007",  # Wheelchair bound (finding)
+        "238108007",  # Cachexia (finding)
+        "248269005",  # Tired on least exertion (finding)
+        "248278004",  # Attacks of weakness (finding)
+        "248279007",  # Frailty (finding)
+        "249888000",  # Weakness of sternomastoid (finding)
+        "249937002",  # Truncal muscle weakness (finding)
+        "249938007",  # Weakness of back (finding)
+        "249939004",  # Proximal muscle weakness (finding)
+        "249940002",  # Shoulder girdle weakness (finding)
+        "249941003",  # Pelvic girdle weakness (finding)
+        "249942005",  # Distal muscle weakness (finding)
+        "249943000",  # Weakness of distal arms and legs (finding)
+        "249946008",  # Pyramidal type muscle weakness (finding)
+        "250002000",  # Rapid fatigue of gait (finding)
+        "250003005",  # Low level sensorimotor gait disorder (finding)
+        "250015009",  # Arthritic gait (finding)
+        "250029005",  # Sensory ataxic gait (finding)
+        "250032008",  # Vestibular ataxic gait (finding)
+        "250033003",  # Visual ataxic gait (finding)
+        "250034009",  # Middle level sensorimotor gait disorder (finding)
+        "250038007",  # Retropulsion when walking (finding)
+        "250043000",  # High level sensorimotor gait disorder (finding)
+        "250044006",  # Cautious gait (finding)
+        "250045007",  # Tottering gait (finding)
+        "250048009",  # Frontal ataxia (finding)
+        "250052009",  # Petren's gait (finding)
+        "250054005",  # Frontal gait disorder (finding)
+        "262285001",  # Weight decreased (finding)
+        "267024001",  # Abnormal weight loss (finding)
+        "267031002",  # Tiredness symptom (finding)
+        "267032009",  # Tired all the time (finding)
+        "268964003",  # On examination - festination-Parkinson gait (finding)
+        "271795006",  # Malaise and fatigue (finding)
+        "271875007",  # Senile debility (finding)
+        "272036004",  # Complaining of debility and malaise (finding)
+        "272060000",  # Fatigue - symptom (finding)
+        "272062008",  # Complaining of "tired all the time" (finding)
+        "275313006",  # Dragging leg (finding)
+        "284529003",  # Cardiac cachexia (finding)
+        "298283006",  # Hand muscle weakness (finding)
+        "300948004",  # Quadriceps weakness (finding)
+        "309249007",  # Calf muscle weakness (finding)
+        "309257005",  # Excessive weight loss (finding)
+        "312444006",  # Spastic paraparesis (finding)
+        "314109004",  # Feeling tired (finding)
+        "365884000",  # Cerebellar ataxic gait (finding)
+        "367391008",  # Malaise (finding)
+        "371028005",  # Spastic paresis (finding)
+        "373931001",  # Sensation of heaviness in limbs (finding)
+        "394616008",  # Unsteady gait (finding)
+        "397776000",  # Festinating gait (finding)
+        "404904002",  # Frail elderly (finding)
+        "413121008",  # Dependent on helper pushing wheelchair (finding)
+        "418073009",  # Pseudoparalysis due to generalized arthritis (finding)
+        "422868009",  # Unexplained weight loss (finding)
+        "426977000",  # Recent weight loss (finding)
+        "428116008",  # Multifactorial gait problem (finding)
+        "428264009",  # Painful gait (finding)
+        "429091008",  # Dependence on biphasic positive airway pressure ventilation (finding)
+        "429487005",  # Dependence on continuous positive airway pressure ventilation (finding)
+        "431524008",  # Abnormal gait due to impairment of balance (finding)
+        "432559006",  # Abnormal gait due to muscle weakness (finding)
+        "442099003",  # Psychogenic fatigue (finding)
+        "444042007",  # Excessive postexertional fatigue (finding)
+        "444932008",  # Dependence on ventilator (finding)
+        "448765001",  # Unintentional weight loss (finding)
+        "713512009",  # Muscle weakness of upper limb (finding)
+        "713514005",  # Muscle weakness of limb (finding)
+        "713568000",  # Occasionally tired (finding)
+        "713655003",  # Dependence on non-invasive ventilation (finding)
+        "784317004",  # Fatigue due to chemotherapy (finding)
+        "784318009",  # Fatigue due to radiation therapy (finding)
+        "788876001",  # Cachexia due to malignant neoplastic disease (finding)
+        "788900007",  # Dependence on artificial heart (finding)
+        "931000119107",  # Dependence on supplemental oxygen (finding)
+        "60631000119109",  # Dependence on home ventilator (finding)
+        "60651000119103",  # Dependence on continuous supplemental oxygen (finding)
+        "69161000119103",  # Functional gait abnormality (finding)
+        "79021000119104",  # Dependence on aspirator (finding)
+        "79031000119101",  # Dependence on respirator (finding)
+        "85711000119103",  # Stumbling due to lack of coordination (finding)
+        "89201000119106",  # Dependence on supplemental oxygen when ambulating (finding)
+        "152921000119101",  # Dependence on respiratory device (finding)
+        "250991000119100",  # Stumbling gait (finding)
+        "459821000124104",  # McArdle sign (finding)
+        "15634971000119107",  # Weakness of bilateral upper limbs (finding)
+        "16018391000119104",  # Paresis of left lower limb (finding)
+        "16018431000119109",  # Paresis of right lower limb (finding)
+        "16419651000119103",  # Dependence on biphasic positive airway pressure ventilation due to central sleep apnea syndrome (finding)
+    }

canvas_sdk/value_set/value_set.py

@@ -0,0 +1,91 @@
+from collections import defaultdict
+from typing import Dict, Union
+
+
+class CodeConstants:
+    CPT = "CPT"
+    HCPCSLEVELII = "HCPCSLEVELII"
+    CVX = "CVX"
+    LOINC = "LOINC"
+    SNOMEDCT = "SNOMEDCT"
+    FDB = "FDB"
+    RXNORM = "RXNORM"
+    ICD10CM = "ICD10CM"
+    ICD10PCS = "ICD10PCS"
+    NUCC = "NUCC"
+    CANVAS = "CANVAS"
+    INTERNAL = "INTERNAL"
+    NDC = "NDC"
+
+    URL_CPT = "http://www.ama-assn.org/go/cpt"
+    URL_HCPCSLEVELII = "https://coder.aapc.com/hcpcs-codes"
+    URL_CVX = "http://hl7.org/fhir/sid/cvx"
+    URL_LOINC = "http://loinc.org"
+    URL_SNOMEDCT = "http://snomed.info/sct"
+    URL_FDB = "http://www.fdbhealth.com/"
+    URL_RXNORM = "http://www.nlm.nih.gov/research/umls/rxnorm"
+    URL_ICD10 = "ICD-10"
+    URL_NUCC = "http://www.nucc.org/"
+    URL_CANVAS = "CANVAS"
+    URL_INTERNAL = "INTERNAL"
+    URL_NDC = "http://hl7.org/fhir/sid/ndc"
+
+
+class CodeConstantsURLMapping:
+    CODE_SYSTEM_MAPPING = {
+        CodeConstants.CPT: CodeConstants.URL_CPT,
+        CodeConstants.HCPCSLEVELII: CodeConstants.URL_HCPCSLEVELII,
+        CodeConstants.CVX: CodeConstants.URL_CVX,
+        CodeConstants.LOINC: CodeConstants.URL_LOINC,
+        CodeConstants.SNOMEDCT: CodeConstants.URL_SNOMEDCT,
+        CodeConstants.FDB: CodeConstants.URL_FDB,
+        CodeConstants.RXNORM: CodeConstants.URL_RXNORM,
+        CodeConstants.ICD10CM: CodeConstants.URL_ICD10,
+        CodeConstants.ICD10PCS: CodeConstants.URL_ICD10,
+        CodeConstants.NUCC: CodeConstants.URL_NUCC,
+        CodeConstants.CANVAS: CodeConstants.URL_CANVAS,
+        CodeConstants.INTERNAL: CodeConstants.URL_INTERNAL,
+        CodeConstants.NDC: CodeConstants.URL_NDC,
+    }
+
+
+class CombinedValueSet(CodeConstantsURLMapping):
+    def __init__(
+        self,
+        value_set_1: Union["ValueSet", "CombinedValueSet"],
+        value_set_2: Union["ValueSet", "CombinedValueSet"],
+    ) -> None:
+        self.value_set_1 = value_set_1
+        self.value_set_2 = value_set_2
+
+    @property
+    def values(self):
+        values: Dict[str, set] = defaultdict(set)
+
+        for vs in [self.value_set_1, self.value_set_2]:
+            sub_values = vs.values
+
+            for key in sub_values:
+                values[key] |= sub_values[key]
+
+        return values
+
+    def __or__(self, value_set: Union["ValueSet", "CombinedValueSet"]) -> "CombinedValueSet":
+        return CombinedValueSet(self, value_set)
+
+
+class ValueSystems(type):
+    @property
+    def values(cls) -> dict[str, set]:
+        return {
+            system: getattr(cls, system)
+            for system in cls.CODE_SYSTEM_MAPPING.keys()
+            if hasattr(cls, system)
+        }
+
+    def __or__(self, value_set: Union["ValueSet", "CombinedValueSet"]) -> CombinedValueSet:
+        return CombinedValueSet(self, value_set)
+
+
+class ValueSet(CodeConstantsURLMapping, metaclass=ValueSystems):
+    pass

canvas-0.1.15.dist-info/RECORD

@@ -1,95 +0,0 @@
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canvas_generated/data_access_layer/data_access_layer_pb2.py

@@ -1,30 +0,0 @@
-# -*- coding: utf-8 -*-
-# Generated by the protocol buffer compiler.  DO NOT EDIT!
-# source: canvas_generated/data_access_layer/data_access_layer.proto
-# Protobuf Python Version: 4.25.0
-"""Generated protocol buffer code."""
-from google.protobuf import descriptor as _descriptor
-from google.protobuf import descriptor_pool as _descriptor_pool
-from google.protobuf import symbol_database as _symbol_database
-from google.protobuf.internal import builder as _builder
-# @@protoc_insertion_point(imports)
-
-_sym_db = _symbol_database.Default()
-
-
-
-
-DESCRIPTOR = _descriptor_pool.Default().AddSerializedFile(b'\n:canvas_generated/data_access_layer/data_access_layer.proto\"\x10\n\x02ID\x12\n\n\x02id\x18\x01 \x01(\t\"\x8b\x01\n\x07Patient\x12\n\n\x02id\x18\x01 \x01(\t\x12\x17\n\nfirst_name\x18\x02 \x01(\tH\x00\x88\x01\x01\x12\x16\n\tlast_name\x18\x03 \x01(\tH\x01\x88\x01\x01\x12\x17\n\nbirth_date\x18\x04 \x01(\tH\x02\x88\x01\x01\x42\r\n\x0b_first_nameB\x0c\n\n_last_nameB\r\n\x0b_birth_date20\n\x0f\x44\x61taAccessLayer\x12\x1d\n\nGetPatient\x12\x03.ID\x1a\x08.Patient\"\x00\x62\x06proto3')
-
-_globals = globals()
-_builder.BuildMessageAndEnumDescriptors(DESCRIPTOR, _globals)
-_builder.BuildTopDescriptorsAndMessages(DESCRIPTOR, 'canvas_generated.data_access_layer.data_access_layer_pb2', _globals)
-if _descriptor._USE_C_DESCRIPTORS == False:
-  DESCRIPTOR._options = None
-  _globals['_ID']._serialized_start=62
-  _globals['_ID']._serialized_end=78
-  _globals['_PATIENT']._serialized_start=81
-  _globals['_PATIENT']._serialized_end=220
-  _globals['_DATAACCESSLAYER']._serialized_start=222
-  _globals['_DATAACCESSLAYER']._serialized_end=270
-# @@protoc_insertion_point(module_scope)

canvas_generated/data_access_layer/data_access_layer_pb2.pyi

@@ -1,23 +0,0 @@
-from google.protobuf import descriptor as _descriptor
-from google.protobuf import message as _message
-from typing import ClassVar as _ClassVar, Optional as _Optional
-
-DESCRIPTOR: _descriptor.FileDescriptor
-
-class ID(_message.Message):
-    __slots__ = ("id",)
-    ID_FIELD_NUMBER: _ClassVar[int]
-    id: str
-    def __init__(self, id: _Optional[str] = ...) -> None: ...
-
-class Patient(_message.Message):
-    __slots__ = ("id", "first_name", "last_name", "birth_date")
-    ID_FIELD_NUMBER: _ClassVar[int]
-    FIRST_NAME_FIELD_NUMBER: _ClassVar[int]
-    LAST_NAME_FIELD_NUMBER: _ClassVar[int]
-    BIRTH_DATE_FIELD_NUMBER: _ClassVar[int]
-    id: str
-    first_name: str
-    last_name: str
-    birth_date: str
-    def __init__(self, id: _Optional[str] = ..., first_name: _Optional[str] = ..., last_name: _Optional[str] = ..., birth_date: _Optional[str] = ...) -> None: ...

canvas_generated/data_access_layer/data_access_layer_pb2_grpc.py

@@ -1,66 +0,0 @@
-# Generated by the gRPC Python protocol compiler plugin. DO NOT EDIT!
-"""Client and server classes corresponding to protobuf-defined services."""
-import grpc
-
-from canvas_generated.data_access_layer import data_access_layer_pb2 as canvas__generated_dot_data__access__layer_dot_data__access__layer__pb2
-
-
-class DataAccessLayerStub(object):
-    """Missing associated documentation comment in .proto file."""
-
-    def __init__(self, channel):
-        """Constructor.
-
-        Args:
-            channel: A grpc.Channel.
-        """
-        self.GetPatient = channel.unary_unary(
-                '/DataAccessLayer/GetPatient',
-                request_serializer=canvas__generated_dot_data__access__layer_dot_data__access__layer__pb2.ID.SerializeToString,
-                response_deserializer=canvas__generated_dot_data__access__layer_dot_data__access__layer__pb2.Patient.FromString,
-                )
-
-
-class DataAccessLayerServicer(object):
-    """Missing associated documentation comment in .proto file."""
-
-    def GetPatient(self, request, context):
-        """Missing associated documentation comment in .proto file."""
-        context.set_code(grpc.StatusCode.UNIMPLEMENTED)
-        context.set_details('Method not implemented!')
-        raise NotImplementedError('Method not implemented!')
-
-
-def add_DataAccessLayerServicer_to_server(servicer, server):
-    rpc_method_handlers = {
-            'GetPatient': grpc.unary_unary_rpc_method_handler(
-                    servicer.GetPatient,
-                    request_deserializer=canvas__generated_dot_data__access__layer_dot_data__access__layer__pb2.ID.FromString,
-                    response_serializer=canvas__generated_dot_data__access__layer_dot_data__access__layer__pb2.Patient.SerializeToString,
-            ),
-    }
-    generic_handler = grpc.method_handlers_generic_handler(
-            'DataAccessLayer', rpc_method_handlers)
-    server.add_generic_rpc_handlers((generic_handler,))
-
-
- # This class is part of an EXPERIMENTAL API.
-class DataAccessLayer(object):
-    """Missing associated documentation comment in .proto file."""
-
-    @staticmethod
-    def GetPatient(request,
-            target,
-            options=(),
-            channel_credentials=None,
-            call_credentials=None,
-            insecure=False,
-            compression=None,
-            wait_for_ready=None,
-            timeout=None,
-            metadata=None):
-        return grpc.experimental.unary_unary(request, target, '/DataAccessLayer/GetPatient',
-            canvas__generated_dot_data__access__layer_dot_data__access__layer__pb2.ID.SerializeToString,
-            canvas__generated_dot_data__access__layer_dot_data__access__layer__pb2.Patient.FromString,
-            options, channel_credentials,
-            insecure, call_credentials, compression, wait_for_ready, timeout, metadata)

canvas_sdk/data/data_access_layer_client.py

@@ -1,95 +0,0 @@
-"""
-Data Access Layer client.
-
-This module is primarily responsible for executing calls to the gRPC service so that such details
-are abstracted away from callers. The return values of the methods on the client class are protobufs
-which must be mapped to user-facing objects.
-"""
-
-import functools
-from collections.abc import Callable
-from types import FunctionType
-from typing import Any
-
-import grpc
-from grpc import StatusCode
-
-from canvas_generated.data_access_layer.data_access_layer_pb2 import ID, Patient
-from canvas_generated.data_access_layer.data_access_layer_pb2_grpc import (
-    DataAccessLayerStub,
-)
-from settings import DAL_TARGET
-
-from . import exceptions
-from .exceptions import DataModuleError
-
-
-class _DataAccessLayerClientMeta(type):
-    """
-    Metaclass for the Data Access Layer client class.
-
-    Wraps all methods of a class with a gRPC error handler.
-    """
-
-    def __new__(cls, name: str, bases: tuple, attrs: dict) -> type:
-        for attr_name, attr_value in attrs.items():
-            if isinstance(attr_value, FunctionType):
-                attrs[attr_name] = cls.handle_grpc_errors(attr_value)
-        return super().__new__(cls, name, bases, attrs)
-
-    @classmethod
-    def handle_grpc_errors(cls, func: Callable[..., Any]) -> Callable[..., Any]:
-        """
-        Decorator that wraps a try-except block around all class methods. gRPC errors are mapped to
-        a defined set of exceptions from a Data Access Layer exception hierarchy.
-        """
-
-        @functools.wraps(func)
-        def wrapper(*args: Any, **kwargs: Any) -> Any:
-            try:
-                return func(*args, **kwargs)
-            except grpc.RpcError as error:
-                # gRPC exceptions aren't tightly defined, so we'll try to get a status code and
-                # error details, and handle it if we can't
-                try:
-                    status_code = error.code()
-                except Exception:
-                    status_code = None
-
-                try:
-                    error_details = error.details()
-                except Exception:
-                    error_details = ""
-
-                # Map more gRPC status codes to exception types as needed
-                match status_code:
-                    case StatusCode.NOT_FOUND:
-                        raise exceptions.DataModuleNotFoundError(error_details) from error
-                    case _:
-                        raise exceptions.DataModuleError from error
-            except Exception as exception:
-                raise DataModuleError from exception
-
-        return wrapper
-
-
-class _DataAccessLayerClient(metaclass=_DataAccessLayerClientMeta):
-    """
-    Data Access Layer client.
-
-    Do not instantiate -- just import the global variable DAL_CLIENT.
-    """
-
-    def __init__(self) -> None:
-        self._channel = grpc.insecure_channel(DAL_TARGET)
-        self._stub = DataAccessLayerStub(self._channel)
-
-    def get_patient(self, id: str) -> Patient:
-        """Given an ID, get the Patient from the Data Access Layer."""
-        return self._stub.GetPatient(ID(id=id))
-
-
-# There should only be one instantiation of the client, so this global will act as a singleton in a
-# way. This is the value that should be imported; no one should be instantiating the DAL client
-# (hence the underscore notation indicating that the class is "private").
-DAL_CLIENT = _DataAccessLayerClient()

canvas_sdk/data/exceptions.py

@@ -1,16 +0,0 @@
-"""Data Access Layer exceptions."""
-
-
-class DataModuleError(RuntimeError):
-    """
-    General Data Access Layer error; base class and also used to represent errors of indeterminate
-    cause.
-    """
-
-    pass
-
-
-class DataModuleNotFoundError(DataModuleError):
-    """Object not found error."""
-
-    pass