canns 0.14.3__py3-none-any.whl → 0.15.1__py3-none-any.whl

canns/pipeline/asa_gui/core/runner.py

@@ -651,7 +651,7 @@ class PipelineRunner:
     def _run_cohomap(
         self, asa_data: dict[str, Any], state: WorkflowState, log_callback
     ) -> dict[str, Path]:
-        from canns.analyzer.data.asa import plot_cohomap_multi
+        from canns.analyzer.data.asa import plot_cohomap_scatter_multi
         from canns.analyzer.visualization import PlotConfigs
 
         tda_dir = self._results_dir(state) / "TDA"
@@ -684,7 +684,7 @@ class PipelineRunner:
         log_callback("Generating cohomology map...")
         pos = self._aligned_pos if self._aligned_pos is not None else asa_data
         config = PlotConfigs.cohomap(show=False, save_path=str(cohomap_path))
-        plot_cohomap_multi(
+        plot_cohomap_scatter_multi(
             decoding_result=decode_result,
             position_data={"x": pos["x"], "y": pos["y"]},
             config=config,
@@ -1175,18 +1175,18 @@ class PipelineRunner:
         self, asa_data: dict[str, Any], state: WorkflowState, log_callback
     ) -> dict[str, Path]:
         from canns.analyzer.data.asa import (
-            plot_cohospace_neuron_1d,
-            plot_cohospace_neuron_2d,
-            plot_cohospace_population_1d,
-            plot_cohospace_population_2d,
-            plot_cohospace_trajectory_1d,
-            plot_cohospace_trajectory_2d,
+            plot_cohospace_scatter_neuron_1d,
+            plot_cohospace_scatter_neuron_2d,
+            plot_cohospace_scatter_population_1d,
+            plot_cohospace_scatter_population_2d,
+            plot_cohospace_scatter_trajectory_1d,
+            plot_cohospace_scatter_trajectory_2d,
         )
-        from canns.analyzer.data.asa.cohospace import (
-            compute_cohoscore_1d,
-            compute_cohoscore_2d,
-            plot_cohospace_neuron_skewed,
-            plot_cohospace_population_skewed,
+        from canns.analyzer.data.asa.cohospace_scatter import (
+            compute_cohoscore_scatter_1d,
+            compute_cohoscore_scatter_2d,
+            plot_cohospace_scatter_neuron_skewed,
+            plot_cohospace_scatter_population_skewed,
         )
         from canns.analyzer.visualization import PlotConfigs
 
@@ -1254,11 +1254,11 @@ class PipelineRunner:
         if enable_score:
             try:
                 if dim_mode == "1d":
-                    scores = compute_cohoscore_1d(
+                    scores = compute_cohoscore_scatter_1d(
                         coords2, activity, top_percent=top_percent, times=times
                     )
                 else:
-                    scores = compute_cohoscore_2d(
+                    scores = compute_cohoscore_scatter_2d(
                         coords2, activity, top_percent=top_percent, times=times
                     )
                 cohoscore_path = out_dir / "cohoscore.npy"
@@ -1314,7 +1314,7 @@ class PipelineRunner:
         traj_path = out_dir / "cohospace_trajectory.png"
         if dim_mode == "1d":
             traj_cfg = PlotConfigs.cohospace_trajectory_1d(show=False, save_path=str(traj_path))
-            plot_cohospace_trajectory_1d(
+            plot_cohospace_scatter_trajectory_1d(
                 coords=coords2,
                 times=None,
                 subsample=subsample,
@@ -1322,7 +1322,7 @@ class PipelineRunner:
             )
         else:
             traj_cfg = PlotConfigs.cohospace_trajectory_2d(show=False, save_path=str(traj_path))
-            plot_cohospace_trajectory_2d(
+            plot_cohospace_scatter_trajectory_2d(
                 coords=coords2,
                 times=None,
                 subsample=subsample,
@@ -1334,7 +1334,7 @@ class PipelineRunner:
             log_callback(f"Plotting neuron {neuron_id}...")
             neuron_path = out_dir / f"cohospace_neuron_{neuron_id}.png"
             if unfold == "skew" and dim_mode != "1d":
-                plot_cohospace_neuron_skewed(
+                plot_cohospace_scatter_neuron_skewed(
                     coords=coordsbox2,
                     activity=activity,
                     neuron_id=int(neuron_id),
@@ -1351,7 +1351,7 @@ class PipelineRunner:
                     neuron_cfg = PlotConfigs.cohospace_neuron_1d(
                         show=False, save_path=str(neuron_path)
                     )
-                    plot_cohospace_neuron_1d(
+                    plot_cohospace_scatter_neuron_1d(
                         coords=coordsbox2,
                         activity=activity,
                         neuron_id=int(neuron_id),
@@ -1364,7 +1364,7 @@ class PipelineRunner:
                     neuron_cfg = PlotConfigs.cohospace_neuron_2d(
                         show=False, save_path=str(neuron_path)
                     )
-                    plot_cohospace_neuron_2d(
+                    plot_cohospace_scatter_neuron_2d(
                         coords=coordsbox2,
                         activity=activity,
                         neuron_id=int(neuron_id),
@@ -1384,7 +1384,7 @@ class PipelineRunner:
             else:
                 neuron_ids = list(range(activity.shape[1]))
             if unfold == "skew" and dim_mode != "1d":
-                plot_cohospace_population_skewed(
+                plot_cohospace_scatter_population_skewed(
                     coords=coords2,
                     activity=activity,
                     neuron_ids=neuron_ids,
@@ -1401,7 +1401,7 @@ class PipelineRunner:
                     pop_cfg = PlotConfigs.cohospace_population_1d(
                         show=False, save_path=str(pop_path)
                     )
-                    plot_cohospace_population_1d(
+                    plot_cohospace_scatter_population_1d(
                         coords=coords2,
                         activity=activity,
                         neuron_ids=neuron_ids,
@@ -1414,7 +1414,7 @@ class PipelineRunner:
                     pop_cfg = PlotConfigs.cohospace_population_2d(
                         show=False, save_path=str(pop_path)
                     )
-                    plot_cohospace_population_2d(
+                    plot_cohospace_scatter_population_2d(
                         coords=coords2,
                         activity=activity,
                         neuron_ids=neuron_ids,

canns/pipeline/asa_gui/views/pages/preprocess_page.py

@@ -5,7 +5,6 @@ from __future__ import annotations
 from pathlib import Path
 
 import numpy as np
-
 from PySide6.QtCore import QSettings, Qt, Signal
 from PySide6.QtGui import QColor
 from PySide6.QtWidgets import (
@@ -388,9 +387,7 @@ class PreprocessPage(QWidget):
             if is_zh
             else "Choose local file, built-in dataset, or URL."
         )
-        self.dataset_key.setToolTip(
-            "选择内置数据集" if is_zh else "Select a built-in dataset."
-        )
+        self.dataset_key.setToolTip("选择内置数据集" if is_zh else "Select a built-in dataset.")
         self.dataset_session.setToolTip(
             "Left-Right 数据集的会话 id。" if is_zh else "Session id for Left-Right dataset."
         )
@@ -410,7 +407,9 @@ class PreprocessPage(QWidget):
             else "Embedding builds a dense spike matrix for TDA/FR."
         )
         self.embed_res.setToolTip(
-            "时间分箱分辨率（与 t 单位一致）。" if is_zh else "Time bin resolution (same unit as t)."
+            "时间分箱分辨率（与 t 单位一致）。"
+            if is_zh
+            else "Time bin resolution (same unit as t)."
         )
         self.embed_dt.setToolTip(
             "时间步长（与 t 单位一致）。" if is_zh else "Time step (same unit as t)."
@@ -425,9 +424,7 @@ class PreprocessPage(QWidget):
             else "Remove low-speed samples (common for grid data)."
         )
         self.embed_min_speed.setToolTip(
-            "速度阈值（与 t/x/y 单位一致）。"
-            if is_zh
-            else "Speed threshold (same unit as t/x/y)."
+            "速度阈值（与 t/x/y 单位一致）。" if is_zh else "Speed threshold (same unit as t/x/y)."
         )
 
         self.dataset_session.setPlaceholderText("例如 26034_3" if is_zh else "e.g. 26034_3")
@@ -527,9 +524,7 @@ class PreprocessPage(QWidget):
             except Exception:
                 hint = ""
             if is_left_right:
-                hint = (
-                    (hint + "\n") if hint else ""
-                ) + (
+                hint = ((hint + "\n") if hint else "") + (
                     "左/右数据集需要 session id 和文件名。"
                     if is_zh
                     else "Left-right dataset requires session id + filename."
@@ -612,8 +607,8 @@ class PreprocessPage(QWidget):
             key = self.dataset_key.currentData() or self.dataset_key.currentText()
             label = self._slugify(str(key))
             try:
-                from canns.data import loaders as _loaders
                 from canns.data import datasets as _datasets
+                from canns.data import loaders as _loaders
 
                 if key == "roi_data":
                     data = _loaders.load_roi_data()

{canns-0.14.3.dist-info → canns-0.15.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: canns
-Version: 0.14.3
+Version: 0.15.1
 Summary: A Python Library for Continuous Attractor Neural Networks
 Project-URL: Repository, https://github.com/routhleck/canns
 Author-email: Sichao He <sichaohe@outlook.com>

{canns-0.14.3.dist-info → canns-0.15.1.dist-info}/RECORD

@@ -3,19 +3,25 @@ canns/_version.py,sha256=zIvJPOGBFvo4VV6f586rlO_bvhuFp1fsxjf6xhsqkJY,1547
 canns/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 canns/analyzer/__init__.py,sha256=EQ02fYHkpMADp-ojpVCVtapuSPkl6j5WVfdPy0mOTs4,506
 canns/analyzer/data/__init__.py,sha256=RfS8vwApLkNF05Y_lfPaJpN_bRv-mOA_uFziaduDHgI,354
-canns/analyzer/data/asa/__init__.py,sha256=w1RC5QbCXh9UH1PrrBXdclopH86jAJyxNw-nCymGgA8,2312
-canns/analyzer/data/asa/cohospace.py,sha256=wiTu03IqxnkJeSRzlJpcN31OZRG3jfgq4TG8mVvs3R0,37246
+canns/analyzer/data/asa/__init__.py,sha256=JtXp1QgoqsA1_XiZ4TNFnTGP_iKo5fHeJ_V3wpdhN6g,3327
+canns/analyzer/data/asa/coho.py,sha256=775bOruTVSNRjM0A4YRTeiWKVQtEMCR3zTYXgVTeLiw,444
+canns/analyzer/data/asa/cohomap.py,sha256=ZIiH1Mu306jg1lLmeV-akEzbojXQQVKW3nl0PbFKD4M,15217
+canns/analyzer/data/asa/cohomap_vectors.py,sha256=o2eHMqiAvmhZfebOvHZ1zypqZKKgvZu0WLs3KD3Nfis,11273
+canns/analyzer/data/asa/cohospace.py,sha256=8sq1Z0QGDxzC-5YY1n-nDEtqH3vnIsVA0Q1ST7egxTE,6701
+canns/analyzer/data/asa/cohospace_phase_centers.py,sha256=ZQDhd_cBv8SFcVxgGM0nJabTLjKQZ1mg9Ho6duUG0xY,3738
+canns/analyzer/data/asa/cohospace_scatter.py,sha256=lBubii5rz-MiTT_rYa5u59nzw2vkuOcFDnM6UhvvJ9M,33893
 canns/analyzer/data/asa/config.py,sha256=qm0k0nt0xuDUK5t63MG7ii7fgs2XbxyLxKOaOKJuB_s,6398
 canns/analyzer/data/asa/decode.py,sha256=NG8vVx2cPG7uSJDovnC2vzk0dsqU8oR4jaNPxxrvCc0,16501
-canns/analyzer/data/asa/embedding.py,sha256=fa1wEH2puMw8HiZIYCufas51uvnlduxwNMUPpwkbdoc,9643
-canns/analyzer/data/asa/filters.py,sha256=D-1mDVn4hBEAphKUgx1gQEUfgbghKcNQhZmr4xEExQA,7146
+canns/analyzer/data/asa/embedding.py,sha256=V1TzOD4wzyx3xmwCBHLLWgX92rBkMjWkFz-F-4xPPxo,9581
 canns/analyzer/data/asa/fly_roi.py,sha256=_scBOd-4t9yv_1tHk7wbXJwPieU-L-QtFJY6fhHpxDI,38031
-canns/analyzer/data/asa/fr.py,sha256=jt99H50e1RRAQgMIdkfK0rBbembZJEr9SMrxK-ZI_LA,13449
-canns/analyzer/data/asa/path.py,sha256=dL6hsqBoPFfC4ZrHDVFDWprbRfJAAYpiq4tIkZ6NvHY,15540
-canns/analyzer/data/asa/plotting.py,sha256=o0fErGzDtbERiZK7uzyQN6Jd7Hm6jXZFg4aGZ100BQU,42766
+canns/analyzer/data/asa/fr.py,sha256=-MuA50eTVdVJB7CUBeLelvnm0i0c0pK5NRICLoSD7oo,13292
+canns/analyzer/data/asa/path.py,sha256=JM8NqkhwFx7qDs26n_t2bL5md9V4oR2E2ksXwYAwTug,17965
+canns/analyzer/data/asa/plotting.py,sha256=PuYGZgal67uDRZ4xBczJKbVblqbza4a03re105Wj7vA,42243
 canns/analyzer/data/asa/tda.py,sha256=7IdxhBNEE99qenG6Zi4B5tv_L9K6gAW6HHxYGiErx4c,30574
-canns/analyzer/data/cell_classification/__init__.py,sha256=ho8yYcBf0Do_M3V1l0Li26gLDi_DIS4F-Pr5IMLcJ5A,2221
-canns/analyzer/data/cell_classification/core/__init__.py,sha256=Lv1zkGI3UnFT4yGkj351Jj-KEVtZlmRUM37SDby1bIE,761
+canns/analyzer/data/asa/utils.py,sha256=s9R1d6K4op9MnjcBaI4vrnEAC-9KyZE6S9dg_zR0ONs,4899
+canns/analyzer/data/cell_classification/__init__.py,sha256=Ri0VJYn2OI3ygC4m-Xc9rjFvgPLaEykc-D94VxmUclQ,2447
+canns/analyzer/data/cell_classification/core/__init__.py,sha256=J9uqjx2wTK-uh3OWFqP8BkY_ySz3rU_VWRNQ_1t3EbM,865
+canns/analyzer/data/cell_classification/core/btn.py,sha256=rgZdEoMgqgOPah5KHEQAx7pNWDsWBzZ2pNQ5BstTYFM,8546
 canns/analyzer/data/cell_classification/core/grid_cells.py,sha256=fRFixjvPVJy0QF9MygGqpIk1lnTToMZvvbGubM5woRk,21547
 canns/analyzer/data/cell_classification/core/grid_modules_leiden.py,sha256=xWrbL51BeU9pIaCzak54upFBeSUtnx_V_naILjzzExk,9032
 canns/analyzer/data/cell_classification/core/head_direction.py,sha256=CQKyon9pb3K5SBkesuqkBTU-QXx_-g0FBa0bblWDPOw,12060
@@ -27,7 +33,8 @@ canns/analyzer/data/cell_classification/utils/circular_stats.py,sha256=fQ1PNBiF_
 canns/analyzer/data/cell_classification/utils/correlation.py,sha256=57Ckn8OQGLipT7qZIGl6wgooQ_8gwp01g9lVc8I3Cs0,10354
 canns/analyzer/data/cell_classification/utils/geometry.py,sha256=jOLh3GeO-riR5a7r7Q7uON3HU_bYOZZJLbokU5bjCOQ,12683
 canns/analyzer/data/cell_classification/utils/image_processing.py,sha256=o9bLT4ycJ_IF7SKBe2RqSWIQwNcpi9v4AI-N5vpm_jM,12805
-canns/analyzer/data/cell_classification/visualization/__init__.py,sha256=HJy71bZuvvfFxrd4PTj3AUon68FBjZjtmjgky20oo5o,450
+canns/analyzer/data/cell_classification/visualization/__init__.py,sha256=fmEHZBcurW6y6FwySLoq65b6CH2kNUB02NCVw2ou6Nc,590
+canns/analyzer/data/cell_classification/visualization/btn_plots.py,sha256=wHP6jyzzqvD2bgYriQFu1tZQiHevlYDy8V1fFNBw4M0,7345
 canns/analyzer/data/cell_classification/visualization/grid_plots.py,sha256=NFtyYOe2Szt0EOIwQmZradwEvvRjjm7mm6VnnGThDQ0,7914
 canns/analyzer/data/cell_classification/visualization/hd_plots.py,sha256=nzw1jck3VHvAFsJAGelhrJf1q27A5PI0r3NKVgeea8U,5670
 canns/analyzer/metrics/__init__.py,sha256=DTsrv1HW133_RgvhWzz7Gx-bP2hOZbPO2unCPPyf9gs,178
@@ -41,16 +48,16 @@ canns/analyzer/slow_points/checkpoint.py,sha256=s4_-5HZJvmnyFqpK1O9WWYkhAhZj1i5j
 canns/analyzer/slow_points/finder.py,sha256=y-YKg-LI7lRM4JMghfcb5NGSYhIM2VPRA37YSCkVK_4,25437
 canns/analyzer/slow_points/fixed_points.py,sha256=Qp-iezwydWWUTchb2hGXJv0QKJqIm9gSG6hh0H9Eb6E,10099
 canns/analyzer/slow_points/visualization.py,sha256=sRmmxs900OSB680MTp0PNIGLpS5i5AmJ58ek20vmrSE,10610
-canns/analyzer/visualization/__init__.py,sha256=pNIokzS8y3ydzEMmVm1FNrOMRALDeuOHbcwZicPUm90,2131
+canns/analyzer/visualization/__init__.py,sha256=_4a8mrVOr8TR63LZbXym-djYbW-6vxxI78dxiHpSsho,2211
 canns/analyzer/visualization/energy_plots.py,sha256=u0TOLzd7AWEfs-tRYZg1UBwsGYGPF_eWsMip1ZG9jPA,35671
 canns/analyzer/visualization/spatial_plots.py,sha256=30m02xhYkZfEETCtvBSwLix9SEOPcLZTg0AGGFvPc2w,34605
 canns/analyzer/visualization/spike_plots.py,sha256=wOm4gh_3obJy6gwo31maoaiZ7O8rsoYeFdhseoVmX78,12280
-canns/analyzer/visualization/theta_sweep_plots.py,sha256=2kiP7-IizqGm0q-ohQ4HhDZpm3sqs_lgn3GErHEZzbI,62262
+canns/analyzer/visualization/theta_sweep_plots.py,sha256=BPW0VRR-rSJcJkMkY-Z1NpMS3iPIgLe3w0ZLBnHfeog,67723
 canns/analyzer/visualization/tuning_plots.py,sha256=9JOeC4dlulVzpHQWDVy3dlJnxcBZiOPeapPdVFR-7Zk,5178
 canns/analyzer/visualization/core/__init__.py,sha256=Vngm2A05cTu9ZVEYepTF7lVpuwQvMRjXs9XPLfZzedI,1928
 canns/analyzer/visualization/core/animation.py,sha256=qfBYMd81_GwWEw4MHOu3GrVXJtHS9W1xxtmOx-J5ZyM,7664
 canns/analyzer/visualization/core/backend.py,sha256=Nbk-ARL_xeWlb3nl5SUPrFQNns2wq5BeHU3Q_tAbd_c,9539
-canns/analyzer/visualization/core/config.py,sha256=PI4GnEwjwDhRpWPfe-bdYBLIO9ica5B3dYUC_VhpSek,25542
+canns/analyzer/visualization/core/config.py,sha256=2-YIFa-eqtUrNPJERTpPO-PPX0PdOaAioi95VT9WUbQ,26268
 canns/analyzer/visualization/core/jupyter_utils.py,sha256=JD56VeeWb7w9t5DJ8TpgnxRWkUK46ArbbPSTlFdIM10,6034
 canns/analyzer/visualization/core/rendering.py,sha256=YCbiXu8MOAqE9FVb_id5JKr5g9O64sCh-dOs0EK4gnU,18291
 canns/analyzer/visualization/core/writers.py,sha256=HLsP953hgsv140ZX2XPzHfCUTqenjmjbLNrbknKam_s,15607
@@ -76,12 +83,12 @@ canns/pipeline/launcher.py,sha256=GASiWSfezljY56swjfLUR_QZCUU5Acm4v3mh9kNYayE,19
 canns/pipeline/asa/__init__.py,sha256=JR4T0onfmkKMOrUq-k0San1RTSb1om6cd27tWovBp0c,466
 canns/pipeline/asa/__main__.py,sha256=_KgAeuGQ2-SXmuZhvZCkRx9luFf7VgKUCuszNlUswyA,197
 canns/pipeline/asa/app.py,sha256=L5al6PrGoEzRNosZlHbn-VaTxXCoVyfKFn0f1e-0FUI,49906
-canns/pipeline/asa/runner.py,sha256=Bq1uKEEtn-qzOnftpmQ1YCbDr_ygYFj98C1H2Oylkfo,45246
+canns/pipeline/asa/runner.py,sha256=FFz1Sfk5ysyHgoXAl-TK100nA27plLcO7Z7xUZ0COd4,45398
 canns/pipeline/asa/screens.py,sha256=DbqidxmoKe4KzSLuxuriVv1PIVFn5Z-PfScVfjrIiEA,5954
 canns/pipeline/asa/state.py,sha256=XukidfcFIOmm9ttT226FOTYR5hv2VAY8_DZt7V1Ml2g,6955
 canns/pipeline/asa/styles.tcss,sha256=eaXI3rQeWdBYmWdLJMMiSO6acHtreLRVKKoIHb2-dBk,3349
 canns/pipeline/asa/widgets.py,sha256=3vPGGQWP9V5FwuwqykCVp7dzAHdpcFkDqib0DtIw-lQ,8087
-canns/pipeline/asa_gui/__init__.py,sha256=38gJUuQGfZ5gTJOJfYx8gJuy_bF69Qdpi1HNEYDKaH8,2250
+canns/pipeline/asa_gui/__init__.py,sha256=FthSerbWbpOjwNp9z4c20mu1fcIvRnBiYzl5ALVh_NE,2280
 canns/pipeline/asa_gui/__main__.py,sha256=2UOQtIE5oXkcq9HcuY13M3Jk6-uaDu8A0VJfvr203ck,134
 canns/pipeline/asa_gui/app.py,sha256=Wd-tVGNPE1mQ0S9bET-cyjfj5UWsTIFFHOQRu0lngBs,833
 canns/pipeline/asa_gui/main_window.py,sha256=kQp8DTmp7SuYVCglh5lVja7DyQ7hAOxPgCEUmjKHgbk,7019
@@ -94,14 +101,14 @@ canns/pipeline/asa_gui/analysis_modes/decode_mode.py,sha256=uEe3lfWAA0pqmCXzNpaA
 canns/pipeline/asa_gui/analysis_modes/fr_mode.py,sha256=xzx1RhGVDbx6huEtEHGfUqWgRN_C6Sf-Ycj9BzIgTRY,3961
 canns/pipeline/asa_gui/analysis_modes/frm_mode.py,sha256=8rgh_P7dxYJfx2TxrhD00Ja6tK0q6NboqwZ7n0Sw_2U,3992
 canns/pipeline/asa_gui/analysis_modes/gridscore_mode.py,sha256=XC-O2lMx3NPxUkSoZo_69g7B_yFAYUnKIPKLj9-gKM4,5712
-canns/pipeline/asa_gui/analysis_modes/pathcompare_mode.py,sha256=oRZPB8y7ORDFDPk99joRNQRj_e5qmR-GuJHrGnSynS4,10808
+canns/pipeline/asa_gui/analysis_modes/pathcompare_mode.py,sha256=d3R19eHz44z2YP3UFUNcQFDJGg0qp3Giv_7uWGCMzAo,10838
 canns/pipeline/asa_gui/analysis_modes/tda_mode.py,sha256=xnsWv_zfstzYPf_nLbQkCNHxxhYRznz4m-73ClaBQKs,6094
 canns/pipeline/asa_gui/controllers/__init__.py,sha256=RuQz960T4kEuQsBI_cjS0cQgFyqAdblLXy_dDoLPbTE,198
 canns/pipeline/asa_gui/controllers/analysis_controller.py,sha256=8cKs-RYHh_NflP7xeS0u0_y9WsZ268H1Wyp-wHZC97I,1769
 canns/pipeline/asa_gui/controllers/preprocess_controller.py,sha256=uNZifNGadYPxAVyWnfonOs5pwCgxwB1nrBGqvv8Y3hU,2825
 canns/pipeline/asa_gui/core/__init__.py,sha256=vfJVs5T999vh04Fi98kRLjD8AkbqpIGxmRiUhaxCNYY,371
 canns/pipeline/asa_gui/core/cache.py,sha256=qAg9Su_T1xIR5j8DK9KzwSdCGs0lKtMaZKr0Lhcj0KU,327
-canns/pipeline/asa_gui/core/runner.py,sha256=6Gz9ptWhVrUfsxW0EkyrSjilEj5GjyajhJ08RU8wye8,74509
+canns/pipeline/asa_gui/core/runner.py,sha256=PgD4WHxKDo9Nos-djo98DRcYKNB0sdgrc41WjtxG6TE,74693
 canns/pipeline/asa_gui/core/state.py,sha256=hjv8NrgROlACgjm5VZtQL58_podJFWS2sLHi5YiVLJY,10148
 canns/pipeline/asa_gui/core/worker.py,sha256=ig6fwcMLNR6N3oSX3LW-bJdXm3Hol29iAVX9pU6KWSc,7778
 canns/pipeline/asa_gui/models/__init__.py,sha256=Pr5wfeu_iA8bh2ob9tfWQcWmzWydYjMwups29R6c8-U,217
@@ -122,7 +129,7 @@ canns/pipeline/asa_gui/views/__init__.py,sha256=ThoLlMw7bKxA7lkv_AvIR1mbpaoM0vkI
 canns/pipeline/asa_gui/views/help_content.py,sha256=kL7MSwc9v3gHLz86Apiy64xbwymt9r7sPEjz5ka6EB0,8452
 canns/pipeline/asa_gui/views/pages/__init__.py,sha256=xB7VTY_hKfoCNMGeWZbV3gHG9ErrzmwqW30UlUkbqgE,161
 canns/pipeline/asa_gui/views/pages/analysis_page.py,sha256=X6PGW_cgvAiNFqUpsS2TuVWl258Q6Q90C9NEQT1TetQ,22807
-canns/pipeline/asa_gui/views/pages/preprocess_page.py,sha256=AHWidQqNKF0TBx8i2dDmPfxjT4Qy45_FjBYh-O1zB8E,31364
+canns/pipeline/asa_gui/views/pages/preprocess_page.py,sha256=QNKLCL5y_nmmdYUh6GiDI12-sBXYU_z3OpU9ovZ-DXc,31303
 canns/pipeline/asa_gui/views/panels/__init__.py,sha256=Spqmc0Sjh38cgr42gszmiogZQFFOLN1yL7ekSpVJCrE,36
 canns/pipeline/asa_gui/views/widgets/__init__.py,sha256=xaTYXw99OL8ye1cpfoKgSwqC7c2B6lrLLsYHRB16m64,481
 canns/pipeline/asa_gui/views/widgets/artifacts_tab.py,sha256=U_fuOCfSmkDhx3G97aod-8UPSIFVz_MrsU4b_ik_5qE,1431
@@ -158,8 +165,8 @@ canns/trainer/utils.py,sha256=ZdoLiRqFLfKXsWi0KX3wGUp0OqFikwiou8dPf3xvFhE,2847
 canns/typing/__init__.py,sha256=mXySdfmD8fA56WqZTb1Nj-ZovcejwLzNjuk6PRfTwmA,156
 canns/utils/__init__.py,sha256=OMyZ5jqZAIUS2Jr0qcnvvrx6YM-BZ1EJy5uZYeA3HC0,366
 canns/utils/benchmark.py,sha256=oJ7nvbvnQMh4_MZh7z160NPLp-197X0rEnmnLHYlev4,1361
-canns-0.14.3.dist-info/METADATA,sha256=UMyUaYFYtHoS60udBftAohcR0mIxJygdyUXyVdxfK18,9799
-canns-0.14.3.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
-canns-0.14.3.dist-info/entry_points.txt,sha256=57YF2HZp_BG3GeGB8L0m3wR1sSfNyMXF1q4CKEjce6U,164
-canns-0.14.3.dist-info/licenses/LICENSE,sha256=u6NJ1N-QSnf5yTwSk5UvFAdU2yKD0jxG0Xa91n1cPO4,11306
-canns-0.14.3.dist-info/RECORD,,
+canns-0.15.1.dist-info/METADATA,sha256=Rxhq9ndM1JJjHYGYaB_BjffkvlLXO-22xIzwzOm8h1I,9799
+canns-0.15.1.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
+canns-0.15.1.dist-info/entry_points.txt,sha256=57YF2HZp_BG3GeGB8L0m3wR1sSfNyMXF1q4CKEjce6U,164
+canns-0.15.1.dist-info/licenses/LICENSE,sha256=u6NJ1N-QSnf5yTwSk5UvFAdU2yKD0jxG0Xa91n1cPO4,11306
+canns-0.15.1.dist-info/RECORD,,

canns/analyzer/data/asa/filters.py

@@ -1,208 +0,0 @@
-from __future__ import annotations
-
-import numbers
-
-import numpy as np
-from numpy.exceptions import AxisError
-from scipy.ndimage import _nd_image, _ni_support
-from scipy.ndimage._filters import _invalid_origin
-
-
-def _gaussian_filter1d(
-    input,
-    sigma,
-    axis=-1,
-    order=0,
-    output=None,
-    mode="reflect",
-    cval=0.0,
-    truncate=4.0,
-    *,
-    radius=None,
-):
-    """1-D Gaussian filter.
-
-    Parameters
-    ----------
-    %(input)s
-    sigma : scalar
-        standard deviation for Gaussian kernel
-    %(axis)s
-    order : int, optional
-        An order of 0 corresponds to convolution with a Gaussian
-        kernel. A positive order corresponds to convolution with
-        that derivative of a Gaussian.
-    %(output)s
-    %(mode_reflect)s
-    %(cval)s
-    truncate : float, optional
-        Truncate the filter at this many standard deviations.
-        Default is 4.0.
-    radius : None or int, optional
-        Radius of the Gaussian kernel. If specified, the size of
-        the kernel will be ``2*radius + 1``, and `truncate` is ignored.
-        Default is None.
-
-    Returns
-    -------
-    gaussian_filter1d : ndarray
-
-    Notes
-    -----
-    The Gaussian kernel will have size ``2*radius + 1`` along each axis. If
-    `radius` is None, a default ``radius = round(truncate * sigma)`` will be
-    used.
-
-    Examples
-    --------
-    >>> from scipy.ndimage import gaussian_filter1d
-    >>> import numpy as np
-    >>> gaussian_filter1d([1.0, 2.0, 3.0, 4.0, 5.0], 1)
-    array([ 1.42704095,  2.06782203,  3.        ,  3.93217797,  4.57295905])
-    >>> _gaussian_filter1d([1.0, 2.0, 3.0, 4.0, 5.0], 4)
-    array([ 2.91948343,  2.95023502,  3.        ,  3.04976498,  3.08051657])
-    >>> import matplotlib.pyplot as plt
-    >>> rng = np.random.default_rng()
-    >>> x = rng.standard_normal(101).cumsum()
-    >>> y3 = _gaussian_filter1d(x, 3)
-    >>> y6 = _gaussian_filter1d(x, 6)
-    >>> plt.plot(x, 'k', label='original data')
-    >>> plt.plot(y3, '--', label='filtered, sigma=3')
-    >>> plt.plot(y6, ':', label='filtered, sigma=6')
-    >>> plt.legend()
-    >>> plt.grid()
-    >>> plt.show()
-
-    """
-    sd = float(sigma)
-    # make the radius of the filter equal to truncate standard deviations
-    lw = int(truncate * sd + 0.5)
-    if radius is not None:
-        lw = radius
-    if not isinstance(lw, numbers.Integral) or lw < 0:
-        raise ValueError("Radius must be a nonnegative integer.")
-    # Since we are calling correlate, not convolve, revert the kernel
-    weights = _gaussian_kernel1d(sigma, order, lw)[::-1]
-    return _correlate1d(input, weights, axis, output, mode, cval, 0)
-
-
-def _gaussian_kernel1d(sigma, order, radius):
-    """
-    Computes a 1-D Gaussian convolution kernel.
-    """
-    if order < 0:
-        raise ValueError("order must be non-negative")
-    exponent_range = np.arange(order + 1)
-    sigma2 = sigma * sigma
-    x = np.arange(-radius, radius + 1)
-    phi_x = np.exp(-0.5 / sigma2 * x**2)
-    phi_x = phi_x / phi_x.sum()
-
-    if order == 0:
-        return phi_x
-    else:
-        # f(x) = q(x) * phi(x) = q(x) * exp(p(x))
-        # f'(x) = (q'(x) + q(x) * p'(x)) * phi(x)
-        # p'(x) = -1 / sigma ** 2
-        # Implement q'(x) + q(x) * p'(x) as a matrix operator and apply to the
-        # coefficients of q(x)
-        q = np.zeros(order + 1)
-        q[0] = 1
-        D = np.diag(exponent_range[1:], 1)  # D @ q(x) = q'(x)
-        P = np.diag(np.ones(order) / -sigma2, -1)  # P @ q(x) = q(x) * p'(x)
-        Q_deriv = D + P
-        for _ in range(order):
-            q = Q_deriv.dot(q)
-        q = (x[:, None] ** exponent_range).dot(q)
-        return q * phi_x
-
-
-def _correlate1d(input, weights, axis=-1, output=None, mode="reflect", cval=0.0, origin=0):
-    """Calculate a 1-D correlation along the given axis.
-
-    The lines of the array along the given axis are correlated with the
-    given weights.
-
-    Parameters
-    ----------
-    %(input)s
-    weights : array
-        1-D sequence of numbers.
-    %(axis)s
-    %(output)s
-    %(mode_reflect)s
-    %(cval)s
-    %(origin)s
-
-    Returns
-    -------
-    result : ndarray
-        Correlation result. Has the same shape as `input`.
-
-    Examples
-    --------
-    >>> from scipy.ndimage import correlate1d
-    >>> correlate1d([2, 8, 0, 4, 1, 9, 9, 0], weights=[1, 3])
-    array([ 8, 26,  8, 12,  7, 28, 36,  9])
-    """
-    input = np.asarray(input)
-    weights = np.asarray(weights)
-    complex_input = input.dtype.kind == "c"
-    complex_weights = weights.dtype.kind == "c"
-    if complex_input or complex_weights:
-        if complex_weights:
-            weights = weights.conj()
-            weights = weights.astype(np.complex128, copy=False)
-        kwargs = dict(axis=axis, mode=mode, origin=origin)
-        output = _ni_support._get_output(output, input, complex_output=True)
-        return _complex_via_real_components(_correlate1d, input, weights, output, cval, **kwargs)
-
-    output = _ni_support._get_output(output, input)
-    weights = np.asarray(weights, dtype=np.float64)
-    if weights.ndim != 1 or weights.shape[0] < 1:
-        raise RuntimeError("no filter weights given")
-    if not weights.flags.contiguous:
-        weights = weights.copy()
-    axis = _normalize_axis_index(axis, input.ndim)
-    if _invalid_origin(origin, len(weights)):
-        raise ValueError(
-            "Invalid origin; origin must satisfy "
-            "-(len(weights) // 2) <= origin <= "
-            "(len(weights)-1) // 2"
-        )
-    mode = _ni_support._extend_mode_to_code(mode)
-    _nd_image.correlate1d(input, weights, axis, output, mode, cval, origin)
-    return output
-
-
-def _complex_via_real_components(func, input, weights, output, cval, **kwargs):
-    """Complex convolution via a linear combination of real convolutions."""
-    complex_input = input.dtype.kind == "c"
-    complex_weights = weights.dtype.kind == "c"
-    if complex_input and complex_weights:
-        # real component of the output
-        func(input.real, weights.real, output=output.real, cval=np.real(cval), **kwargs)
-        output.real -= func(input.imag, weights.imag, output=None, cval=np.imag(cval), **kwargs)
-        # imaginary component of the output
-        func(input.real, weights.imag, output=output.imag, cval=np.real(cval), **kwargs)
-        output.imag += func(input.imag, weights.real, output=None, cval=np.imag(cval), **kwargs)
-    elif complex_input:
-        func(input.real, weights, output=output.real, cval=np.real(cval), **kwargs)
-        func(input.imag, weights, output=output.imag, cval=np.imag(cval), **kwargs)
-    else:
-        if np.iscomplexobj(cval):
-            raise ValueError("Cannot provide a complex-valued cval when the input is real.")
-        func(input, weights.real, output=output.real, cval=cval, **kwargs)
-        func(input, weights.imag, output=output.imag, cval=cval, **kwargs)
-    return output
-
-
-def _normalize_axis_index(axis, ndim):
-    # Check if `axis` is in the correct range and normalize it
-    if axis < -ndim or axis >= ndim:
-        msg = f"axis {axis} is out of bounds for array of dimension {ndim}"
-        raise AxisError(msg)
-
-    if axis < 0:
-        axis = axis + ndim
-    return axis