canns 0.12.7__py3-none-any.whl → 0.13.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- canns/analyzer/data/__init__.py +3 -11
- canns/analyzer/data/asa/__init__.py +74 -0
- canns/analyzer/data/asa/cohospace.py +905 -0
- canns/analyzer/data/asa/config.py +246 -0
- canns/analyzer/data/asa/decode.py +448 -0
- canns/analyzer/data/asa/embedding.py +269 -0
- canns/analyzer/data/asa/filters.py +208 -0
- canns/analyzer/data/asa/fr.py +439 -0
- canns/analyzer/data/asa/path.py +389 -0
- canns/analyzer/data/asa/plotting.py +1276 -0
- canns/analyzer/data/asa/tda.py +901 -0
- canns/analyzer/data/legacy/__init__.py +6 -0
- canns/analyzer/data/{cann1d.py → legacy/cann1d.py} +2 -2
- canns/analyzer/data/{cann2d.py → legacy/cann2d.py} +3 -3
- canns/analyzer/visualization/core/backend.py +1 -1
- canns/analyzer/visualization/core/config.py +77 -0
- canns/analyzer/visualization/core/rendering.py +10 -6
- canns/analyzer/visualization/energy_plots.py +22 -8
- canns/analyzer/visualization/spatial_plots.py +31 -11
- canns/analyzer/visualization/theta_sweep_plots.py +15 -6
- canns/pipeline/__init__.py +4 -8
- canns/pipeline/asa/__init__.py +21 -0
- canns/pipeline/asa/__main__.py +11 -0
- canns/pipeline/asa/app.py +1000 -0
- canns/pipeline/asa/runner.py +1095 -0
- canns/pipeline/asa/screens.py +215 -0
- canns/pipeline/asa/state.py +248 -0
- canns/pipeline/asa/styles.tcss +221 -0
- canns/pipeline/asa/widgets.py +233 -0
- canns/pipeline/gallery/__init__.py +7 -0
- canns/task/open_loop_navigation.py +3 -1
- {canns-0.12.7.dist-info → canns-0.13.0.dist-info}/METADATA +6 -3
- {canns-0.12.7.dist-info → canns-0.13.0.dist-info}/RECORD +36 -17
- {canns-0.12.7.dist-info → canns-0.13.0.dist-info}/entry_points.txt +1 -0
- canns/pipeline/theta_sweep.py +0 -573
- {canns-0.12.7.dist-info → canns-0.13.0.dist-info}/WHEEL +0 -0
- {canns-0.12.7.dist-info → canns-0.13.0.dist-info}/licenses/LICENSE +0 -0
canns/analyzer/data/__init__.py
CHANGED
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"""Data analysis utilities for experimental and synthetic neural data.
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"""Data analysis utilities for experimental and synthetic neural data."""
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firing rates) and extracting features like bump positions, topological
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structures, and population dynamics.
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"""
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from .asa import * # noqa: F401,F403
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__all__ = [
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"cann1d",
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"cann2d",
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]
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__all__ = list(locals().get("__all__", []))
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from __future__ import annotations
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# Coho-space analysis + visualization
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from .cohospace import (
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compute_cohoscore,
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plot_cohospace_neuron,
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plot_cohospace_population,
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plot_cohospace_trajectory,
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)
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from .config import (
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CANN2DError,
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CANN2DPlotConfig,
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Constants,
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DataLoadError,
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ProcessingError,
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SpikeEmbeddingConfig,
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TDAConfig,
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)
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from .decode import decode_circular_coordinates, decode_circular_coordinates_multi
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from .embedding import embed_spike_trains
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from .fr import (
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FRMResult,
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compute_fr_heatmap_matrix,
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compute_frm,
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plot_frm,
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save_fr_heatmap_png,
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)
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# Path utilities
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from .path import align_coords_to_position, apply_angle_scale
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# Higher-level plotting helpers
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from .plotting import (
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plot_2d_bump_on_manifold,
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plot_3d_bump_on_torus,
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plot_cohomap,
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plot_cohomap_multi,
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plot_path_compare,
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plot_projection,
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)
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# TDA entry point
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from .tda import tda_vis
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__all__ = [
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"SpikeEmbeddingConfig",
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"TDAConfig",
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"CANN2DPlotConfig",
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"Constants",
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"CANN2DError",
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"DataLoadError",
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"ProcessingError",
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"embed_spike_trains",
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"tda_vis",
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"decode_circular_coordinates",
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"decode_circular_coordinates_multi",
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"plot_projection",
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"plot_path_compare",
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"plot_cohomap",
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"plot_cohomap_multi",
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"plot_3d_bump_on_torus",
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"plot_2d_bump_on_manifold",
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"compute_fr_heatmap_matrix",
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"save_fr_heatmap_png",
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"FRMResult",
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"compute_frm",
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"plot_frm",
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"plot_cohospace_trajectory",
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"plot_cohospace_neuron",
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"plot_cohospace_population",
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"compute_cohoscore",
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"align_coords_to_position",
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"apply_angle_scale",
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]
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