cad-to-dagmc 0.9.3__py3-none-any.whl → 0.9.5__py3-none-any.whl

_version.py

@@ -28,7 +28,7 @@ version_tuple: VERSION_TUPLE
 commit_id: COMMIT_ID
 __commit_id__: COMMIT_ID
 
-__version__ = version = '0.9.3'
-__version_tuple__ = version_tuple = (0, 9, 3)
+__version__ = version = '0.9.5'
+__version_tuple__ = version_tuple = (0, 9, 5)
 
 __commit_id__ = commit_id = None

cad_to_dagmc/__init__.py

@@ -13,4 +13,5 @@ except PackageNotFoundError:
 
 __all__ = ["__version__"]
 
+from .direct_mesh_plugin import *
 from .core import *

cad_to_dagmc/core.py

@@ -9,6 +9,7 @@ import tempfile
 import warnings
 from typing import Iterable
 from cad_to_dagmc import __version__
+from .direct_mesh_plugin import to_mesh
 
 
 def define_moab_core_and_tags() -> tuple[core.Core, dict]:
@@ -811,7 +812,6 @@ class CadToDagmc:
     def export_dagmc_h5m_file(
         self,
         filename: str = "dagmc.h5m",
-        meshing_backend: str = "cadquery",
         implicit_complement_material_tag: str | None = None,
         scale_factor: float = 1.0,
         imprint: bool = True,
@@ -821,8 +821,6 @@ class CadToDagmc:
 
         Args:
             filename: the filename to use for the saved DAGMC file.
-            meshing_backend: determines whether gmsh or cadquery's direct mesh method
-                is used for meshing. Options are 'gmsh' or 'cadquery'.
             implicit_complement_material_tag: the name of the material tag to use
                 for the implicit complement (void space).
             scale_factor: a scaling factor to apply to the geometry.
@@ -830,6 +828,11 @@ class CadToDagmc:
 
             **kwargs: Backend-specific parameters:
 
+                Backend selection:
+                - meshing_backend (str, optional): explicitly specify 'gmsh' or 'cadquery'.
+                  If not provided, backend is auto-selected based on other arguments.
+                  Defaults to 'cadquery' if no backend-specific arguments are given.
+
                 For GMSH backend:
                 - min_mesh_size (float): minimum mesh element size
                 - max_mesh_size (float): maximum mesh element size
@@ -850,6 +853,41 @@ class CadToDagmc:
             ValueError: If invalid parameter combinations are used.
         """
 
+        # Handle meshing_backend - either from kwargs or auto-detect
+        meshing_backend = kwargs.pop("meshing_backend", None)
+
+        if meshing_backend is None:
+            # Auto-select meshing_backend based on kwargs
+            cadquery_keys = {"tolerance", "angular_tolerance"}
+            gmsh_keys = {
+                "min_mesh_size",
+                "max_mesh_size",
+                "mesh_algorithm",
+                "set_size",
+                "umesh_filename",
+                "method",
+                "unstructured_volumes",
+            }
+            has_cadquery = any(key in kwargs for key in cadquery_keys)
+            has_gmsh = any(key in kwargs for key in gmsh_keys)
+            if has_cadquery and not has_gmsh:
+                meshing_backend = "cadquery"
+            elif has_gmsh and not has_cadquery:
+                meshing_backend = "gmsh"
+            elif has_cadquery and has_gmsh:
+                provided_cadquery = [key for key in cadquery_keys if key in kwargs]
+                provided_gmsh = [key for key in gmsh_keys if key in kwargs]
+                raise ValueError(
+                    "Ambiguous backend: both CadQuery and GMSH-specific arguments provided.\n"
+                    f"CadQuery-specific arguments: {sorted(cadquery_keys)}\n"
+                    f"GMSH-specific arguments: {sorted(gmsh_keys)}\n"
+                    f"Provided CadQuery arguments: {provided_cadquery}\n"
+                    f"Provided GMSH arguments: {provided_gmsh}\n"
+                    "Please provide only one backend's arguments."
+                )
+            else:
+                meshing_backend = "cadquery"  # default
+
         # Validate meshing backend
         if meshing_backend not in ["gmsh", "cadquery"]:
             raise ValueError(
@@ -857,6 +895,8 @@ class CadToDagmc:
                 'Available options are "gmsh" or "cadquery"'
             )
 
+        print(f"Using meshing backend: {meshing_backend}")
+
         # Initialize variables to avoid unbound errors
         tolerance = 0.1
         angular_tolerance = 0.1
@@ -931,11 +971,11 @@ class CadToDagmc:
 
         # Use the CadQuery direct mesh plugin
         if meshing_backend == "cadquery":
-            import cadquery_direct_mesh_plugin
 
             # Mesh the assembly using CadQuery's direct-mesh plugin
-            cq_mesh = assembly.toMesh(
-                imprint,
+            cq_mesh = to_mesh(
+                assembly,
+                imprint=imprint,
                 tolerance=tolerance,
                 angular_tolerance=angular_tolerance,
                 scale_factor=scale_factor,

cad_to_dagmc/direct_mesh_plugin.py

@@ -0,0 +1,508 @@
+# This is a temporary solution until we have to_mesh like functionality in a
+# PYPI distributed version of CadQuery.
+# This code is adapted from the cadquery-direct-mesh-plugin repository:
+# https://github.com/jmwright/cadquery-direct-mesh-plugin
+
+#                                  Apache License
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+
+from OCP.TopLoc import TopLoc_Location
+from OCP.BRep import BRep_Tool
+from OCP.BRepMesh import BRepMesh_IncrementalMesh
+from OCP import GCPnts, BRepAdaptor
+from OCP.TopAbs import TopAbs_REVERSED, TopAbs_IN
+from OCP.gp import gp_Pnt, gp_Vec
+import cadquery as cq
+
+
+def _is_interior_face(face, solid, tolerance=0.01):
+    """
+    Determine if a face is interior to a solid (like a cavity wall).
+
+    This is more robust than just checking face orientation, as it considers
+    the geometric relationship between the face and the solid.
+    """
+    # Get geometric surface and parameter bounds
+    surf = BRep_Tool.Surface_s(face.wrapped)
+    u_min, u_max, v_min, v_max = face._uvBounds()
+
+    # # Take center point in UV space on the face
+    u = (u_min + u_max) * 0.5
+    v = (v_min + v_max) * 0.5
+    face_pnt = surf.Value(u, v)
+
+    # Determine if the face is most likely inside the solid
+    is_inside = solid.isInside((face_pnt.X(), face_pnt.Y(), face_pnt.Z()))
+
+    # Determine if the normal of the face points generally towards to the center of the solid
+    is_pointing_inward = False
+    face_normal = face.normalAt((face_pnt.X(), face_pnt.Y(), face_pnt.Z()))
+    solid_center = solid.Center()
+
+    to_center = gp_Vec(face_pnt, gp_Pnt(solid_center.x, solid_center.y, solid_center.z))
+
+    # Dot product: negative = toward, positive = away
+    dot = face_normal.dot(cq.Vector(to_center.Normalized()))
+
+    if dot < 0:
+        is_pointing_inward = False
+    else:
+        is_pointing_inward = True
+
+    # If the face seems to be inside the solid and its normal points inwards, it should be an internal face
+    is_internal_face = False
+    if is_inside and is_pointing_inward:
+        is_internal_face = True
+
+    return is_internal_face
+
+
+def to_mesh(
+    assembly,
+    imprint=True,
+    tolerance=0.1,
+    angular_tolerance=0.1,
+    scale_factor=1.0,
+    include_brep_edges=False,
+    include_brep_vertices=False,
+):
+    """
+    Converts an assembly to a custom mesh format defined by the CadQuery team.
+
+    :param imprint: Whether or not the assembly should be imprinted
+    :param tolerance: Tessellation tolerance for mesh generation
+    :param angular_tolerance: Angular tolerance for tessellation
+    :param include_brep_edges: Whether to include BRep edge segments
+    :param include_brep_vertices: Whether to include BRep vertices
+    """
+
+    # To keep track of the vertices and triangles in the mesh
+    vertices = []
+    vertex_map = {}
+    solids = []
+    solid_face_triangle = {}
+    imprinted_assembly = None
+    imprinted_solids_with_orginal_ids = None
+    solid_colors = []
+    solid_locs = []
+    solid_brep_edge_segments = []
+    solid_brep_vertices = []
+
+    # Imprinted assemblies end up being compounds, whereas you have to step through each of the
+    # parts in an assembly and extract the solids.
+    if imprint:
+        # Imprint the assembly and process it as a compound
+        (
+            imprinted_assembly,
+            imprinted_solids_with_orginal_ids,
+        ) = cq.occ_impl.assembly.imprint(assembly)
+
+        # Extract the solids from the imprinted assembly because we should not mesh the compound
+        for solid in imprinted_assembly.Solids():
+            solids.append(solid)
+
+        # Keep track of the colors and location of each of the solids
+        solid_colors.append((0.5, 0.5, 0.5, 1.0))
+        solid_locs.append(cq.Location())
+    else:
+        # Step through every child in the assembly and save their solids
+        for child in assembly.children:
+            # Make sure we end up with a base shape
+            obj = child.obj
+            if type(child.obj).__name__ == "Workplane":
+                solids.append(obj.val())
+            else:
+                solids.append(obj)
+
+            # Use the color set for the assembly component, or use a default color
+            if child.color:
+                solid_colors.append(child.color.toTuple())
+            else:
+                solid_colors.append((0.5, 0.5, 0.5, 1.0))
+
+            # Keep track of the location of each of the solids
+            solid_locs.append(child.loc)
+
+    # Solid and face IDs need to be unique unless they are a shared face
+    solid_idx = 1  # We start at 1 to mimic gmsh
+    face_idx = 1  # We start at id of 1 to mimic gmsh
+
+    # Step through all of the collected solids and their respective faces to get the vertices
+    for solid in solids:
+        # Reset this each time so that we get the correct number of faces per solid
+        face_triangles = {}
+
+        # Order the faces in order of area, largest first
+        sorted_faces = []
+        face_areas = []
+        for face in solid.Faces():
+            area = face.Area()
+            sorted_faces.append((face, area))
+            face_areas.append(area)
+
+        # Sort by area (largest first)
+        sorted_faces.sort(key=lambda x: x[1], reverse=False)
+
+        # Extract just the sorted faces if you need them separately
+        sorted_face_list = [face_info[0] for face_info in sorted_faces]
+
+        # Walk through all the faces
+        for face in sorted_face_list:
+            # Figure out if the face has a reversed orientation so we can handle the triangles accordingly
+            is_reversed = False
+            if face.wrapped.Orientation() == TopAbs_REVERSED:
+                is_reversed = True
+
+            # Location information of the face to place the vertices and edges correctly
+            loc = TopLoc_Location()
+
+            # Perform the tessellation
+            BRepMesh_IncrementalMesh(face.wrapped, tolerance, False, angular_tolerance)
+            face_mesh = BRep_Tool.Triangulation_s(face.wrapped, loc)
+
+            # If this is not an imprinted assembly, override the location of the triangulation
+            if not imprint:
+                loc = solid_locs[solid_idx - 1].wrapped
+
+            # Save the transformation so that we can place vertices in the correct locations later
+            Trsf = loc.Transformation()
+
+            # Pre-process all vertices from the face mesh for better performance
+            face_vertices = {}  # Map from face mesh node index to global vertex index
+            for node_idx in range(1, face_mesh.NbNodes() + 1):
+                node = face_mesh.Node(node_idx)
+                v_trsf = node.Transformed(Trsf)
+                vertex_coords = (
+                    v_trsf.X() * scale_factor,
+                    v_trsf.Y() * scale_factor,
+                    v_trsf.Z() * scale_factor,
+                )
+
+                # Use dictionary for O(1) lookup instead of O(n) list operations
+                if vertex_coords in vertex_map:
+                    face_vertices[node_idx] = vertex_map[vertex_coords]
+                else:
+                    global_vertex_idx = len(vertices)
+                    vertices.append(vertex_coords)
+                    vertex_map[vertex_coords] = global_vertex_idx
+                    face_vertices[node_idx] = global_vertex_idx
+
+            # Step through the triangles of the face
+            cur_triangles = []
+            for i in range(1, face_mesh.NbTriangles() + 1):
+                # Get the current triangle and its index vertices
+                cur_tri = face_mesh.Triangle(i)
+                idx_1, idx_2, idx_3 = cur_tri.Get()
+
+                # Look up pre-processed vertex indices - O(1) operation
+                if is_reversed:
+                    triangle_vertex_indices = [
+                        face_vertices[idx_1],
+                        face_vertices[idx_3],
+                        face_vertices[idx_2],
+                    ]
+                else:
+                    triangle_vertex_indices = [
+                        face_vertices[idx_1],
+                        face_vertices[idx_2],
+                        face_vertices[idx_3],
+                    ]
+
+                cur_triangles.append(triangle_vertex_indices)
+
+            # Save this triangle for the current face
+            face_triangles[face_idx] = cur_triangles
+
+            # Move to the next face
+            face_idx += 1
+
+        solid_face_triangle[solid_idx] = face_triangles
+
+        # If the caller wants to track edges, include them
+        if include_brep_edges:
+            # If this is not an imprinted assembly, override the location of the edges
+            loc = TopLoc_Location()
+            if not imprint:
+                loc = solid_locs[solid_idx - 1].wrapped
+
+            # Save the transformation so that we can place vertices in the correct locations later
+            Trsf = loc.Transformation()
+
+            # Add CadQuery-reported edges
+            current_segments = []
+            for edge in solid.edges():
+                # We need to handle different kinds of edges differently
+                gt = edge.geomType()
+
+                # Line edges are just point to point
+                if gt == "LINE":
+                    start = edge.startPoint().toPnt()
+                    end = edge.endPoint().toPnt()
+
+                    # Apply the assembly location transformation to each vertex
+                    start_trsf = start.Transformed(Trsf)
+                    located_start = (start_trsf.X(), start_trsf.Y(), start_trsf.Z())
+                    end_trsf = end.Transformed(Trsf)
+                    located_end = (end_trsf.X(), end_trsf.Y(), end_trsf.Z())
+
+                    # Save the start and end points for the edge
+                    current_segments.append([located_start, located_end])
+                # If dealing with some sort of arc, discretize it into individual lines
+                elif gt in ("CIRCLE", "ARC", "SPLINE", "BSPLINE", "ELLIPSE"):
+                    # Discretize the curve
+                    disc = GCPnts.GCPnts_TangentialDeflection(
+                        BRepAdaptor.BRepAdaptor_Curve(edge.wrapped),
+                        tolerance,
+                        angular_tolerance,
+                    )
+
+                    # Add each of the discretized sections to the edge list
+                    if disc.NbPoints() > 1:
+                        for i in range(2, disc.NbPoints() + 1):
+                            p_0 = disc.Value(i - 1)
+                            p_1 = disc.Value(i)
+
+                            # Apply the assembly location transformation to each vertex
+                            p_0_trsf = p_0.Transformed(Trsf)
+                            located_p_0 = (p_0_trsf.X(), p_0_trsf.Y(), p_0_trsf.Z())
+                            p_1_trsf = p_1.Transformed(Trsf)
+                            located_p_1 = (p_1_trsf.X(), p_1_trsf.Y(), p_1_trsf.Z())
+
+                            # Save the start and end points for the edge
+                            current_segments.append([located_p_0, located_p_1])
+
+            solid_brep_edge_segments.append(current_segments)
+
+        # Add CadQuery-reported vertices, if requested
+        if include_brep_vertices:
+            # If this is not an imprinted assembly, override the location of the edges
+            loc = TopLoc_Location()
+            if not imprint:
+                loc = solid_locs[solid_idx - 1].wrapped
+
+            # Save the transformation so that we can place vertices in the correct locations later
+            Trsf = loc.Transformation()
+
+            current_vertices = []
+            for vertex in solid.vertices():
+                p = BRep_Tool.Pnt_s(vertex.wrapped)
+
+                # Apply the assembly location transformation to each vertex
+                p_trsf = p.Transformed(Trsf)
+                located_p = (p_trsf.X(), p_trsf.Y(), p_trsf.Z())
+                current_vertices.append(located_p)
+
+            solid_brep_vertices.append(current_vertices)
+
+        # Move to the next solid
+        solid_idx += 1
+
+    return {
+        "vertices": vertices,
+        "solid_face_triangle_vertex_map": solid_face_triangle,
+        "solid_colors": solid_colors,
+        "solid_brep_edge_segments": solid_brep_edge_segments,
+        "solid_brep_vertices": solid_brep_vertices,
+        "imprinted_assembly": imprinted_assembly,
+        "imprinted_solids_with_orginal_ids": imprinted_solids_with_orginal_ids,
+    }

{cad_to_dagmc-0.9.3.dist-info → cad_to_dagmc-0.9.5.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: cad_to_dagmc
-Version: 0.9.3
+Version: 0.9.5
 Summary: Converts CAD files to a DAGMC h5m file
 Author-email: Jonathan Shimwell <mail@jshimwell.com>
 Project-URL: Homepage, https://github.com/fusion-energy/cad_to_dagmc
@@ -49,11 +49,9 @@ cad-to-dagmc can convert the following in to DAGMC compatible meshes:
 - Gmsh meshes (optionally use physical groups as material tags)
 
 Cad-to-dagmc offers a wide range of features including.
-- Compatibly with [assembly-mesh-plugin](https://github.com/CadQuery/assembly-mesh-plugin) (see examples)
-- Access to the Gmsh mesh to allow user to define full set of mesh parameters
-- Option to use Gmsh physical groups as material tags
 - Geometry scaling with ```scale_factor``` argument
-- Model wide mesh size parameters with ```min_mesh_size``` and ```max_mesh_size``` arguments
+- Ddirect surface meshing of CadQuery geometry with ```tolerance``` and ```angular_tolerance``` arguments (avoids using Gmsh)
+- Model wide mesh Gmsh size parameters with ```min_mesh_size``` and ```max_mesh_size``` arguments
 - Volume specific mesh sizing parameters with the ```set_size``` argument
 - Unstructured mesh that share the same coordinates as the surface mesh.
 - Volume mesh allows selecting individual volumes in the geometry.
@@ -65,6 +63,9 @@ Cad-to-dagmc offers a wide range of features including.
 - Pass CadQuery objects in memory for fast transfer of geometry using the ```method``` argument
 - Easy to install with [pip](https://pypi.org/project/cad-to-dagmc/) and [Conda/Mamba](https://anaconda.org/conda-forge/cad_to_dagmc)
 - Well tested both with [CI unit tests](https://github.com/fusion-energy/cad_to_dagmc/tree/main/tests), integration tests and the CSG [Model Benchmark Zoo](https://github.com/fusion-energy/model_benchmark_zoo).
+- Access to the Gmsh mesh to allow user to define full set of mesh parameters
+- Option to use Gmsh physical groups as material tags
+- Compatibly with [assembly-mesh-plugin](https://github.com/CadQuery/assembly-mesh-plugin) (see examples)
 - Compatible with [Paramak](https://github.com/fusion-energy/paramak) geometry for fusion simulations.
 
 

cad_to_dagmc-0.9.5.dist-info/RECORD

@@ -0,0 +1,9 @@
+_version.py,sha256=V1-OiE6OEk5MX27BDAUWprPJs5XL5wiS2EaIpLYazTw,704
+cad_to_dagmc/__init__.py,sha256=oCr1P0QnBsf6AH0RZujX7T7tdrb75NazdF70HtqXSfc,528
+cad_to_dagmc/core.py,sha256=lLPnkK1EM33zBpG3KEzTOLVRWvVlhdrvfgvLGtctT1s,42163
+cad_to_dagmc/direct_mesh_plugin.py,sha256=5jG5ILafjbDacaAvBRWD_ilMZLepcM6H1Tjze85vAxE,24013
+cad_to_dagmc-0.9.5.dist-info/licenses/LICENSE,sha256=B8kznH_777JVNZ3HOKDc4Tj24F7wJ68ledaNYeL9sCw,1070
+cad_to_dagmc-0.9.5.dist-info/METADATA,sha256=ppjg_7Fafa7bZo3qpJDSGylfhTQS4P__wR6YR2rsygQ,9121
+cad_to_dagmc-0.9.5.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+cad_to_dagmc-0.9.5.dist-info/top_level.txt,sha256=zTi8C64SEBsE5WOtPovnxhOzt-E6Oc5nC3RW6M_5aEA,22
+cad_to_dagmc-0.9.5.dist-info/RECORD,,

cad_to_dagmc-0.9.3.dist-info/RECORD

@@ -1,8 +0,0 @@
-_version.py,sha256=IVkGBvcxJApDB_GrSj1qL5BDxEvWBYmqcR3emEmrC0I,704
-cad_to_dagmc/__init__.py,sha256=fskHUTyCunSpnpJUvBfAYjx4uwDKXHTTiMP6GqnFRf0,494
-cad_to_dagmc/core.py,sha256=2OzaYEMcWr508PuyciESTJPvOKRAbEwfOOL6d4VKEzM,40333
-cad_to_dagmc-0.9.3.dist-info/licenses/LICENSE,sha256=B8kznH_777JVNZ3HOKDc4Tj24F7wJ68ledaNYeL9sCw,1070
-cad_to_dagmc-0.9.3.dist-info/METADATA,sha256=OmHxTGWZTity6KYaUwMwB9wppyBxxcry_ikCWOvSfPU,8990
-cad_to_dagmc-0.9.3.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-cad_to_dagmc-0.9.3.dist-info/top_level.txt,sha256=zTi8C64SEBsE5WOtPovnxhOzt-E6Oc5nC3RW6M_5aEA,22
-cad_to_dagmc-0.9.3.dist-info/RECORD,,