bsb 4.4.2__py3-none-any.whl → 6.0.0a5__py3-none-any.whl

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- Metadata-Version: 2.2
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+ Metadata-Version: 2.4
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  Name: bsb
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- Version: 4.4.2
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+ Version: 6.0.0a5
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  Summary: Black-box component framework for multiscale neural modeling
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- Author: Robin De Schepper
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+ Author-email: Robin De Schepper <robin@alexandria.sc>, Dimitri Rodarie <dimitri.rodarie@unipv.it>
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  Maintainer-email: Dimitri Rodarie <dimitri.rodarie@unipv.it>
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  License: GNU GENERAL PUBLIC LICENSE
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  Version 3, 29 June 2007
@@ -684,150 +684,36 @@ Project-URL: Documentation, https://bsb.readthedocs.io/
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  Project-URL: Bug Tracker, https://github.com/dbbs-lab/bsb/issues/
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  Project-URL: Source Code, https://github.com/dbbs-lab/bsb/
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  Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
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- Requires-Python: >=3.9
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+ Requires-Python: <4,>=3.10
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
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- Requires-Dist: bsb-core~=5.0.2
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- Requires-Dist: bsb-json~=4.2.2
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- Requires-Dist: bsb-yaml~=4.2.2
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- Requires-Dist: bsb-hdf5~=5.0.2
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+ Requires-Dist: bsb-core~=6.0
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+ Requires-Dist: bsb-hdf5~=6.0
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+ Requires-Dist: bsb-json~=6.0
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+ Requires-Dist: bsb-yaml~=6.0
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  Provides-Extra: parallel
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  Requires-Dist: bsb-core[parallel]; extra == "parallel"
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  Provides-Extra: neuron
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- Requires-Dist: bsb-neuron~=4.2.2; extra == "neuron"
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+ Requires-Dist: bsb-neuron~=6.0; extra == "neuron"
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  Provides-Extra: nest
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- Requires-Dist: bsb-nest~=4.3.2; extra == "nest"
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+ Requires-Dist: bsb-nest~=6.0; extra == "nest"
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  Provides-Extra: arbor
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- Requires-Dist: bsb-arbor~=4.1.1; extra == "arbor"
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+ Requires-Dist: bsb-arbor~=6.0; extra == "arbor"
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+ Provides-Extra: dev
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+ Requires-Dist: bsb-core[dev]; extra == "dev"
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+ Requires-Dist: bsb-hdf5[dev]; extra == "dev"
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+ Requires-Dist: bsb-json[dev]; extra == "dev"
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+ Requires-Dist: bsb-yaml[dev]; extra == "dev"
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+ Requires-Dist: bsb-arbor[dev]; sys_platform != "win32" and extra == "dev"
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+ Requires-Dist: bsb-test[dev]; extra == "dev"
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+ Requires-Dist: gitdb>=4.0.12; extra == "dev"
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+ Requires-Dist: gitpython>=3.1.44; extra == "dev"
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+ Requires-Dist: smmap>=5.0.2; extra == "dev"
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+ Dynamic: license-file
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- [![Build Status](https://github.com/dbbs-lab/bsb/actions/workflows/main.yml/badge.svg)](https://github.com/dbbs-lab/bsb/actions/workflows/main.yml)
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- # Brain Scaffold Builder suite
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- Developed by the Department of Brain and Behavioral Sciences at the University of Pavia,
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- the Brain Scaffold Builder (BSB) is a component framework for neural modelling, which focuses on component
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- declarations to piece together a brain model.
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- The component declarations can be made in any supported configuration language,
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- or using the library functions in Python.
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- It offers parallel reconstruction and simulation of any network topology, placement and/or connectivity
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- strategy.
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+ [![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json)](https://github.com/astral-sh/ruff)
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- BSB is decomposed into several repositories:
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- - [bsb-core](#bsb-core) — Install the bsb framework. Core component of the `bsb` suite.
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- - [bsb-hdf5](#bsb-hdf5) — Leverage the hdf5 file format to save the models.
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- - [bsb-json](#bsb-json) — Read and write configuration files in json format.
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- - [bsb-yaml](#bsb-yaml) — Read and write configuration files in yaml format
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- - [bsb-nest](#bsb-nest) — Simulate brain models as point-neuron networks with the NEST simulator.
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- - [bsb-neuron](#bsb-neuron) — Simulate brain models as detailed neuron networks with the NEURON simulator.
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- - [bsb-arbor](#bsb-arbor) — Simulate brain models as detailed neuron networks with the ARBOR simulator.
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- ## Installation
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- This repository contains the metadata for the `bsb` package.
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- It is highly recommended that you create a python environment before installing the `bsb` package.
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- BSB currently supports python 3.9, 3.10 and 3.11.
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- With the `bsb` package will be installed the
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- [bsb-core](#bsb-core) framework and the following default set of plugins:
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- - [bsb-hdf5](#bsb-hdf5)
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- - [bsb-json](#bsb-json)
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- - [bsb-yaml](#bsb-yaml)
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+ # bsb
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- You can install these python libraries with the following command:
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- ```shell
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- pip install bsb
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- ```
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- Check also the following sections to install the other bsb plugin.
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-
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- ## BSB repositories
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- ### bsb-core
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-
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- Useful links:
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- [GitHub repo](https://github.com/dbbs-lab/bsb-core),
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-
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- This project contains the main `bsb` framework and is needed by all the other repositories.
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- It also contains tools to support parallel execution with MPI. To install this support, run the following command:
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- ```shell
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- pip install bsb[parallel]
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- ```
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-
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- ### bsb-hdf5
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-
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- Useful links:
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- [GitHub repo](https://github.com/dbbs-lab/bsb-hdf5).
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-
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- This project allows the user to save their model into the hdf5 file format.
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- This plugin is installed by default with the `bsb` package.
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-
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- ### bsb-json
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-
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- Useful links:
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- [GitHub repo](https://github.com/dbbs-lab/bsb-json).
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-
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- This project allows the user to write their model configuration in the json file format.
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- This plugin is installed by default with the `bsb` package.
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-
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- ### bsb-yaml
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-
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- Useful links:
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- [GitHub repo](https://github.com/dbbs-lab/bsb-yaml).
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-
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- This project allows the user to write their model configuration in the yaml file format.
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- This plugin is installed by default with the `bsb` package.
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-
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- ### bsb-nest
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-
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- Useful links:
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- [GitHub repo](https://github.com/dbbs-lab/bsb-nest).
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-
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- This project allows the user to simulate their brain model as point-neuron networks with the
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- [NEST simulator](https://www.nest-simulator.org/).
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- This plugin is not installed by default with the `bsb` package. To install it, you can run the following command:
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-
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- ```shell
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- pip install bsb[nest]
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- ```
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- > [!WARNING]
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- > The NEST simulator is not installed with the bsb-nest package and should be installed separately.
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-
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- ### bsb-neuron
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-
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- Useful links:
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- [GitHub repo](https://github.com/dbbs-lab/bsb-neuron).
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-
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- This project allows the user to simulate their brain model as detailed neural circuits with the
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- [NEURON simulator](https://www.neuron.yale.edu/neuron/).
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- This plugin is not installed by default with the `bsb` package. To install it, you can run the following command:
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- ```shell
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- pip install bsb[neuron]
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- ```
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-
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- ### bsb-arbor
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-
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- Useful links:
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- [GitHub repo](https://github.com/dbbs-lab/bsb-arbor).
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-
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- This project allows the user to simulate their brain model as detailed neural circuits with the
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- [ARBOR simulator](https://arbor-sim.org/).
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- This plugin is not installed by default with the `bsb` package. To install it, you can run the following command:
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- ```shell
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- pip install bsb[arbor]
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- ```
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-
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- ## Running bsb reconstructions and simulations
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- Check BSB [Documentation](https://bsb.readthedocs.io/en/latest).
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-
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- ## Acknowledgements
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-
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- This research has received funding from the European Union’s Horizon 2020 Framework
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- Program for Research and Innovation under the Specific Grant Agreement No. 945539
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- (Human Brain Project SGA3) and Specific Grant Agreement No. 785907 (Human Brain
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- Project SGA2) and from Centro Fermi project “Local Neuronal Microcircuits” to ED.
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- The project is also receiving funding from the Virtual Brain Twin Project under the
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- European Union's Research and Innovation Program Horizon Europe under grant agreement
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- No 101137289.
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-
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- We acknowledge the use of EBRAINS platform and Fenix Infrastructure resources, which are
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- partially funded from the European Union’s Horizon 2020 research and innovation
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- programme under the Specific Grant Agreement No. 101147319 (EBRAINS 2.0 Project) and
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- through the ICEI project under the grant agreement No. 800858 respectively.
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-
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- ### Supported by
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-
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- [![JetBrains logo](https://resources.jetbrains.com/storage/products/company/brand/logos/jetbrains.svg)](https://jb.gg/OpenSourceSupport)
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+ This project contains the metadata of the [BSB](https://github.com/dbbs-lab/bsb) packages.
@@ -0,0 +1,5 @@
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+ bsb-6.0.0a5.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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+ bsb-6.0.0a5.dist-info/METADATA,sha256=s2ksU7eVvNvyNmpRnfSik6bXrHI5L9NRLnehMU1y38g,42380
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+ bsb-6.0.0a5.dist-info/top_level.txt,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
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+ bsb-6.0.0a5.dist-info/RECORD,,
@@ -1,5 +1,5 @@
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  Wheel-Version: 1.0
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- Generator: setuptools (75.8.0)
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+ Generator: setuptools (80.9.0)
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  Root-Is-Purelib: true
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  Tag: py3-none-any
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@@ -1,5 +0,0 @@
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- bsb-4.4.2.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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- bsb-4.4.2.dist-info/METADATA,sha256=BvsDLsftWqVZXuCcJVph5Tp7nEe4ace4lGUZKibotGs,46952
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- bsb-4.4.2.dist-info/top_level.txt,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
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- bsb-4.4.2.dist-info/RECORD,,