bsb 4.4.2__py3-none-any.whl → 6.0.0__py3-none-any.whl
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- {bsb-4.4.2.dist-info → bsb-6.0.0.dist-info}/METADATA +15 -139
- bsb-6.0.0.dist-info/RECORD +5 -0
- {bsb-4.4.2.dist-info → bsb-6.0.0.dist-info}/WHEEL +1 -1
- bsb-4.4.2.dist-info/RECORD +0 -5
- {bsb-4.4.2.dist-info → bsb-6.0.0.dist-info/licenses}/LICENSE +0 -0
- {bsb-4.4.2.dist-info → bsb-6.0.0.dist-info}/top_level.txt +0 -0
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Metadata-Version: 2.
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Metadata-Version: 2.4
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Name: bsb
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Version:
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Version: 6.0.0
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Summary: Black-box component framework for multiscale neural modeling
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Author: Robin De Schepper
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Author-email: Robin De Schepper <robin@alexandria.sc>, Dimitri Rodarie <dimitri.rodarie@unipv.it>
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Maintainer-email: Dimitri Rodarie <dimitri.rodarie@unipv.it>
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License: GNU GENERAL PUBLIC LICENSE
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Version 3, 29 June 2007
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Project-URL: Bug Tracker, https://github.com/dbbs-lab/bsb/issues/
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Project-URL: Source Code, https://github.com/dbbs-lab/bsb/
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Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
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Requires-Python:
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Requires-Python: <4,>=3.10
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Description-Content-Type: text/markdown
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License-File: LICENSE
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Requires-Dist: bsb-core~=
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Requires-Dist: bsb-
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Requires-Dist: bsb-
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Requires-Dist: bsb-
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Requires-Dist: bsb-core~=6.0
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Requires-Dist: bsb-hdf5~=6.0
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Requires-Dist: bsb-json~=6.0
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Requires-Dist: bsb-yaml~=6.0
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Provides-Extra: parallel
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Requires-Dist: bsb-core[parallel]; extra == "parallel"
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Provides-Extra: neuron
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Requires-Dist: bsb-neuron~=
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Requires-Dist: bsb-neuron~=6.0; extra == "neuron"
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Provides-Extra: nest
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Requires-Dist: bsb-nest~=
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Requires-Dist: bsb-nest~=6.0; extra == "nest"
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Provides-Extra: arbor
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Requires-Dist: bsb-arbor~=
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Requires-Dist: bsb-arbor~=6.0; extra == "arbor"
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Dynamic: license-file
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[](https://github.com/astral-sh/ruff)
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BSB is decomposed into several repositories:
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- [bsb-core](#bsb-core) — Install the bsb framework. Core component of the `bsb` suite.
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- [bsb-hdf5](#bsb-hdf5) — Leverage the hdf5 file format to save the models.
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- [bsb-json](#bsb-json) — Read and write configuration files in json format.
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- [bsb-yaml](#bsb-yaml) — Read and write configuration files in yaml format
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- [bsb-nest](#bsb-nest) — Simulate brain models as point-neuron networks with the NEST simulator.
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- [bsb-neuron](#bsb-neuron) — Simulate brain models as detailed neuron networks with the NEURON simulator.
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- [bsb-arbor](#bsb-arbor) — Simulate brain models as detailed neuron networks with the ARBOR simulator.
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This repository contains the metadata for the `bsb` package.
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It is highly recommended that you create a python environment before installing the `bsb` package.
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BSB currently supports python 3.9, 3.10 and 3.11.
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With the `bsb` package will be installed the
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[bsb-core](#bsb-core) framework and the following default set of plugins:
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- [bsb-hdf5](#bsb-hdf5)
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- [bsb-json](#bsb-json)
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- [bsb-yaml](#bsb-yaml)
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# bsb
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```shell
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pip install bsb
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```
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Check also the following sections to install the other bsb plugin.
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## BSB repositories
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### bsb-core
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Useful links:
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[GitHub repo](https://github.com/dbbs-lab/bsb-core),
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This project contains the main `bsb` framework and is needed by all the other repositories.
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It also contains tools to support parallel execution with MPI. To install this support, run the following command:
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```shell
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pip install bsb[parallel]
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```
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### bsb-hdf5
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Useful links:
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[GitHub repo](https://github.com/dbbs-lab/bsb-hdf5).
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This project allows the user to save their model into the hdf5 file format.
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This plugin is installed by default with the `bsb` package.
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### bsb-json
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Useful links:
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[GitHub repo](https://github.com/dbbs-lab/bsb-json).
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This project allows the user to write their model configuration in the json file format.
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This plugin is installed by default with the `bsb` package.
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### bsb-yaml
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Useful links:
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[GitHub repo](https://github.com/dbbs-lab/bsb-yaml).
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This project allows the user to write their model configuration in the yaml file format.
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This plugin is installed by default with the `bsb` package.
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### bsb-nest
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Useful links:
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[GitHub repo](https://github.com/dbbs-lab/bsb-nest).
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This project allows the user to simulate their brain model as point-neuron networks with the
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[NEST simulator](https://www.nest-simulator.org/).
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This plugin is not installed by default with the `bsb` package. To install it, you can run the following command:
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```shell
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pip install bsb[nest]
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```
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> [!WARNING]
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> The NEST simulator is not installed with the bsb-nest package and should be installed separately.
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### bsb-neuron
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Useful links:
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This project allows the user to simulate their brain model as detailed neural circuits with the
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[NEURON simulator](https://www.neuron.yale.edu/neuron/).
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This plugin is not installed by default with the `bsb` package. To install it, you can run the following command:
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```shell
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pip install bsb[neuron]
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```
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### bsb-arbor
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Useful links:
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This project allows the user to simulate their brain model as detailed neural circuits with the
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[ARBOR simulator](https://arbor-sim.org/).
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This plugin is not installed by default with the `bsb` package. To install it, you can run the following command:
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```shell
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pip install bsb[arbor]
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```
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## Running bsb reconstructions and simulations
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Check BSB [Documentation](https://bsb.readthedocs.io/en/latest).
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## Acknowledgements
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This research has received funding from the European Union’s Horizon 2020 Framework
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Program for Research and Innovation under the Specific Grant Agreement No. 945539
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(Human Brain Project SGA3) and Specific Grant Agreement No. 785907 (Human Brain
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Project SGA2) and from Centro Fermi project “Local Neuronal Microcircuits” to ED.
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The project is also receiving funding from the Virtual Brain Twin Project under the
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European Union's Research and Innovation Program Horizon Europe under grant agreement
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No 101137289.
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We acknowledge the use of EBRAINS platform and Fenix Infrastructure resources, which are
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partially funded from the European Union’s Horizon 2020 research and innovation
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programme under the Specific Grant Agreement No. 101147319 (EBRAINS 2.0 Project) and
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through the ICEI project under the grant agreement No. 800858 respectively.
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### Supported by
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[](https://jb.gg/OpenSourceSupport)
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This project contains the metadata of the [BSB](https://github.com/dbbs-lab/bsb) packages.
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bsb-6.0.0.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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bsb-6.0.0.dist-info/METADATA,sha256=-6XysbYeHsyX-efe7CAjLpesXHbCRgofwPThcDrOXhw,41921
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bsb-6.0.0.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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bsb-6.0.0.dist-info/top_level.txt,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
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bsb-6.0.0.dist-info/RECORD,,
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bsb-4.4.2.dist-info/RECORD
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bsb-4.4.2.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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bsb-4.4.2.dist-info/METADATA,sha256=BvsDLsftWqVZXuCcJVph5Tp7nEe4ace4lGUZKibotGs,46952
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bsb-4.4.2.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
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bsb-4.4.2.dist-info/top_level.txt,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
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bsb-4.4.2.dist-info/RECORD,,
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