bsb-nest 4.2.1__py2.py3-none-any.whl → 4.3.0__py2.py3-none-any.whl

bsb_nest/__init__.py

@@ -9,4 +9,4 @@ from .adapter import NestAdapter
 from .simulation import NestSimulation
 
 __plugin__ = SimulationBackendPlugin(Simulation=NestSimulation, Adapter=NestAdapter)
-__version__ = "4.2.1"
+__version__ = "4.3.0"

bsb_nest/device.py

@@ -21,6 +21,8 @@ class NestDevice(DeviceModel):
         type=types.or_(Targetting, NestRule), default=dict, call_default=True
     )
     """Targets of the device, which should be either a population or a nest rule"""
+    receptor_type = config.attr(type=int, required=False, default=0)
+    """Integer ID of the postsynaptic target receptor"""
 
     def get_target_nodes(self, adapter, simulation, simdata):
         if isinstance(self.targetting, Targetting):
@@ -43,8 +45,13 @@ class NestDevice(DeviceModel):
                 nest.Connect(
                     device,
                     nodes,
-                    syn_spec={"weight": self.weight, "delay": self.delay},
+                    syn_spec={
+                        "weight": self.weight,
+                        "delay": self.delay,
+                        "receptor_type": self.receptor_type,
+                    },
                 )
+
             except Exception as e:
                 if "does not send output" not in str(e):
                     raise

bsb_nest/devices/__init__.py

@@ -1,4 +1,5 @@
 from .dc_generator import DCGenerator
 from .multimeter import Multimeter
 from .poisson_generator import PoissonGenerator
+from .sinusoidal_poisson_generator import SinusoidalPoissonGenerator
 from .spike_recorder import SpikeRecorder

bsb_nest/devices/sinusoidal_poisson_generator.py

@@ -0,0 +1,62 @@
+import nest
+from bsb import config
+from neo import SpikeTrain
+
+from ..device import NestDevice
+
+
+@config.node
+class SinusoidalPoissonGenerator(
+    NestDevice, classmap_entry="sinusoidal_poisson_generator"
+):
+    rate = config.attr(type=float, required=True)
+    """Rate of the poisson generator"""
+    amplitude = config.attr(type=float, required=True)
+    """Amplitude of the sinusoidal signal"""
+    frequency = config.attr(type=float, required=True)
+    """Frequency of the sinusoidal signal"""
+    phase = config.attr(type=float, required=False, default=0.0)
+    """Phase of the sinusoidal signal"""
+    start = config.attr(type=float, required=False, default=0.0)
+    """Activation time in ms"""
+    stop = config.attr(type=float, required=False, default=None)
+    """Deactivation time in ms. 
+        If not specified, generator will last until the end of the simulation."""
+
+    def boot(self):
+        if self.stop is not None:
+            if self.stop <= self.start:
+                raise ConfigurationError(
+                    f"Stop time (given: {self.stop}) must be greater than start time (given: {self.start})."
+                )
+
+    def implement(self, adapter, simulation, simdata):
+        nodes = self.get_target_nodes(adapter, simulation, simdata)
+        params = {
+            "rate": self.rate,
+            "start": self.start,
+            "amplitude": self.amplitude,
+            "frequency": self.frequency,
+            "phase": self.phase,
+        }
+        if self.stop is not None:
+            params["stop"] = self.stop
+        device = self.register_device(
+            simdata, nest.Create("sinusoidal_poisson_generator", params=params)
+        )
+        sr = nest.Create("spike_recorder")
+        nest.Connect(device, sr)
+        self.connect_to_nodes(device, nodes)
+
+        def recorder(segment):
+            segment.spiketrains.append(
+                SpikeTrain(
+                    sr.events["times"],
+                    units="ms",
+                    senders=sr.events["senders"],
+                    t_stop=simulation.duration,
+                    device=self.name,
+                )
+            )
+
+        simdata.result.create_recorder(recorder)

{bsb_nest-4.2.1.dist-info → bsb_nest-4.3.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bsb-nest
-Version: 4.2.1
+Version: 4.3.0
 Summary: NEST simulation adapter for the BSB framework.
 Author-email: Robin De Schepper <robingilbert.deschepper@unipv.it>
 Description-Content-Type: text/markdown
@@ -24,7 +24,7 @@ Provides-Extra: dev
 Provides-Extra: parallel
 Provides-Extra: test
 
-[![Build Status](https://github.com/dbbs-lab/bsb-nest/actions/workflows/build.yml/badge.svg)](https://github.com/dbbs-lab/bsb-nest/actions/workflows/build.yml)
+[![Build Status](https://github.com/dbbs-lab/bsb-nest/actions/workflows/main.yml/badge.svg)](https://github.com/dbbs-lab/bsb-nest/actions/workflows/main.yml)
 [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
 
 # bsb-nest

{bsb_nest-4.2.1.dist-info → bsb_nest-4.3.0.dist-info}/RECORD

@@ -1,18 +1,19 @@
-bsb_nest/__init__.py,sha256=IL-VNOohSjl__4e5bfduv46iMjfLhZqT6G9xJdsfTHA,311
+bsb_nest/__init__.py,sha256=La2BwDgSYXsBpvdE_GMHPLfH1bGgXK5JE4rAAh0vGuU,311
 bsb_nest/adapter.py,sha256=uwFdicGOx7mRyYlfRY89zw7re0dnv9qumli1llJ0Rok,6668
 bsb_nest/cell.py,sha256=AauERRJd5OkKVSIxbx6LO2D9L7LDA6iMFfYjxu59e4c,960
 bsb_nest/connection.py,sha256=KFMXRvSR-tN7E52Mpo7dgWjXVQQSOd1VdryRPx-NfHQ,5571
-bsb_nest/device.py,sha256=w6jeGSOzqd8iTtw6HxsWS0TuYTxf6iO9eqAseaFC3W8,2615
+bsb_nest/device.py,sha256=OXpUXJSwduUCIPxzbrAztTwLzS_tLOUvwmoqISGbYr0,2874
 bsb_nest/distributions.py,sha256=qAYaHJkMwaCfbTh_efoJT1hMoDHWsfQo_3SNLoD8WeA,1950
 bsb_nest/exceptions.py,sha256=NX4oiGWIshrLG1DCak_nTfI8cQI7GTdewR71qNzsXGM,264
 bsb_nest/simulation.py,sha256=MCfEhwhbl_S1WNyY-EAzW8SmVKk-nLui71jK9M3lGKw,985
-bsb_nest/devices/__init__.py,sha256=0-zwJ8jdvBdTFetU-q87OfyZYpKl_JVcVDrsLNn7yHQ,163
+bsb_nest/devices/__init__.py,sha256=AgiHteAtWd5jhl_xB_V60oeM31fGb-DGi3WjoLZLL_E,232
 bsb_nest/devices/dc_generator.py,sha256=g-jRZorCl2yYhr5bx2I00ZlxYrblDcqVbtk0XYZzmdI,953
 bsb_nest/devices/multimeter.py,sha256=dLBDNCJuFIgxOZ0ssEoir7d65EW7ORS1jFNsvmU2wJ0,1811
 bsb_nest/devices/poisson_generator.py,sha256=SGo4jhq_rbIoB38OM5FTTYlyShxGAwWqCqAncWVB3qg,1465
+bsb_nest/devices/sinusoidal_poisson_generator.py,sha256=MlNSmJgkuschiUgd2RZXBl008cDWYezbXXdup0TAtJY,2191
 bsb_nest/devices/spike_recorder.py,sha256=vJ9FQqmrcF0HdLl5Jy_bt_ABCUIgF-PLVI23E76JkhY,894
-bsb_nest-4.2.1.dist-info/entry_points.txt,sha256=uJlX9h2VeYfAumav18IM2PTJ3FssfwDUnUmfSFdR2SA,41
-bsb_nest-4.2.1.dist-info/LICENSE,sha256=ljOS4DjXvqEo5VzGfdaRwgRZPbNScGBmfwyC8PChvmQ,32422
-bsb_nest-4.2.1.dist-info/WHEEL,sha256=Sgu64hAMa6g5FdzHxXv9Xdse9yxpGGMeagVtPMWpJQY,99
-bsb_nest-4.2.1.dist-info/METADATA,sha256=gm8BOcXCq1xdqi6oFDS3bUynPxa4BdvNaq_tiN0qnvk,1602
-bsb_nest-4.2.1.dist-info/RECORD,,
+bsb_nest-4.3.0.dist-info/entry_points.txt,sha256=uJlX9h2VeYfAumav18IM2PTJ3FssfwDUnUmfSFdR2SA,41
+bsb_nest-4.3.0.dist-info/LICENSE,sha256=ljOS4DjXvqEo5VzGfdaRwgRZPbNScGBmfwyC8PChvmQ,32422
+bsb_nest-4.3.0.dist-info/WHEEL,sha256=Sgu64hAMa6g5FdzHxXv9Xdse9yxpGGMeagVtPMWpJQY,99
+bsb_nest-4.3.0.dist-info/METADATA,sha256=7vrpz4RkqfZZkyYO0z4PPAPUz8BoNVTYPVMlv8mNckQ,1600
+bsb_nest-4.3.0.dist-info/RECORD,,