brkraw 0.5.5__py3-none-any.whl → 0.5.6__py3-none-any.whl

brkraw/__init__.py

@@ -1,6 +1,6 @@
 from __future__ import annotations
 
-__version__ = '0.5.5'
+__version__ = '0.5.6'
 from .apps.loader import BrukerLoader
 
 

brkraw/apps/loader/types.py

@@ -28,10 +28,10 @@ if TYPE_CHECKING:
     from ...resolver.nifti import Nifti1HeaderContents, XYZUNIT, TUNIT
 
 
-InfoScope = Literal['full', 'study', 'scan']
+InfoScope: TypeAlias = Literal['full', 'study', 'scan']
 Dataobjs = Optional[Union[NDArray, Tuple[NDArray, ...]]]
 Affines = Optional[Union[NDArray, Tuple[NDArray, ...]]]
-AffineSpace = Literal["raw", "scanner", "subject_ras"]
+AffineSpace: TypeAlias = Literal["raw", "scanner", "subject_ras"]
 ConvertedObj = Optional[Union["ToFilename", Tuple["ToFilename", ...]]]
 Metadata = Optional[Union[Dict, Tuple[Optional[Dict], ...]]]
 HookArgs = Optional[Mapping[str, Mapping[str, Any]]]

brkraw/resolver/affine.py

@@ -1,6 +1,13 @@
 from __future__ import annotations
-from typing import Optional, Union, TypedDict, Tuple, Literal, List, Any
-from typing import cast, TYPE_CHECKING
+from typing import Optional, Union, TypedDict, Tuple, Literal, List, Any, TYPE_CHECKING
+from typing import cast
+if TYPE_CHECKING:
+    from typing_extensions import TypeAlias
+else:
+    try:
+        from typing import TypeAlias
+    except ImportError:  # pragma: no cover - fallback for Python 3.8
+        from typing_extensions import TypeAlias
 from .helpers import get_file, get_reco, return_alt_val_if_none
 import logging
 import numpy as np
@@ -11,8 +18,8 @@ if TYPE_CHECKING:
     from ..dataclasses import Scan, Reco
     from ..core.parameters import Parameters
 
-SubjectType = Literal["Biped", "Quadruped", "Phantom", "Other", "OtherAnimal"]
-SubjectPose = Literal[
+SubjectType: TypeAlias = Literal["Biped", "Quadruped", "Phantom", "Other", "OtherAnimal"]
+SubjectPose: TypeAlias = Literal[
     "Head_Supine", "Head_Prone", "Head_Left", "Head_Right",
     "Foot_Supine", "Foot_Prone", "Foot_Left", "Foot_Right",
 ]

brkraw/resolver/nifti.py

@@ -260,7 +260,7 @@ def resolve(
     
     if num_cycles > 1:
         time_step = cast(float, image_info['time_per_cycle']) / 1000.0
-        num_slices = image_info['dataobj'].shape[2]
+        num_slices = cast(np.ndarray, image_info['dataobj']).shape[2]
         slice_duration = time_step / num_slices
     else:
         time_step = None

{brkraw-0.5.5.dist-info → brkraw-0.5.6.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: brkraw
-Version: 0.5.5
+Version: 0.5.6
 Summary: Toolkit for loading Bruker Paravision datasets, mapping metadata, and exporting NIfTI
 Project-URL: Homepage, https://brkraw.github.io
 Maintainer-email: SungHo Lee <shlee@unc.edu>
@@ -49,7 +49,7 @@ Description-Content-Type: text/markdown
 
 A modular toolkit for Bruker MRI raw-data handling.
 
-BrkRaw (v0.5.5) converts raw data into standardized, neuroimaging-ready
+BrkRaw (v0.5.6) converts raw data into standardized, neuroimaging-ready
 datasets, with extensible rules/specs and plugin hooks.
 
 - Documentation: [brkraw.github.io](https://brkraw.github.io/)
@@ -70,7 +70,7 @@ If you use BrkRaw in your research, please cite it.
 @software{brkraw,
   author = {Lee, Sung-Ho and Devenyi, Gabriel A. and Ban, Woomi and Shih, Yen-Yu Ian},
   title = {BrkRaw: A modular toolkit for Bruker MRI raw-data handling},
-  version = {0.5.5},
+  version = {0.5.6},
   doi = {10.5281/zenodo.3818614},
   url = {https://github.com/BrkRaw/brkraw},
   note = {Documentation: https://brkraw.github.io},

{brkraw-0.5.5.dist-info → brkraw-0.5.6.dist-info}/RECORD

@@ -1,4 +1,4 @@
-brkraw/__init__.py,sha256=NNoLZss9K8Drck-8uP0v-fmqjTX4pxmlAi1s4ZLsw20,210
+brkraw/__init__.py,sha256=9ho1Q3Ulv_Vos3tCwm-EsOHKRz8Sis53EALqgjFqRnw,210
 brkraw/api/__init__.py,sha256=y7ZSFdF2uZK5e6ExGt3CQGg-DD5fmT0WouQiplSbwsA,3858
 brkraw/api/types.py,sha256=s11MIkHApOeREQZeIbx1zXz5R4WtYaBIVXD4s47Vnoc,672
 brkraw/apps/__init__.py,sha256=sEdA1SrY-Vu0xU1ct5Eab7vX-_IFMDip2j3FdSQVT58,170
@@ -13,7 +13,7 @@ brkraw/apps/loader/__init__.py,sha256=ih3YNHm2JQpR_5bWNpKwzVImXg4rl6eK8C_40texwr
 brkraw/apps/loader/core.py,sha256=NfwxZyp85CBtjSzT72zU91Hg1MafkVvEnHhvradD6OA,22460
 brkraw/apps/loader/formatter.py,sha256=oiGO942bZMZODxI8kgYE0gdX4FLjwaZTquvZN3yGeeU,9315
 brkraw/apps/loader/helper.py,sha256=dujao_UH8C6aeZQ-GCTwCleoa-ZkrIDYSKlgwSN6gwA,34574
-brkraw/apps/loader/types.py,sha256=0w82elJXF0wYPZQ3eKiPTAR1vdearWnUtNH6CNzyYNo,6226
+brkraw/apps/loader/types.py,sha256=MzQOQCZ0HLfBqUMvXaSEi53OdI9u-ZCozAcjdod2apY,6248
 brkraw/apps/loader/info/__init__.py,sha256=1tWVkBakwf3LZK-FwsMrt10fkkdz9cWw1j-Y4Dk6Lio,164
 brkraw/apps/loader/info/scan.py,sha256=omq7d00huVNY2ClMwkEclWWe2a8P3AZV42Xy0vG7YUk,2837
 brkraw/apps/loader/info/scan.yaml,sha256=tYyGRg4t_rf6jGZAT8F0_dUA9MlQeZ5zeOuTNQ2wQM8,1728
@@ -56,12 +56,12 @@ brkraw/default/rules/00_default.yaml,sha256=a4PZOR0oam0ziZqLsvaQZqwoDu-uXbPVdxJc
 brkraw/default/specs/metadata_dicom.yaml,sha256=grrwGOBIIEUJPTs6vktWydnEsvBTjbgwez0190Q8ma0,4295
 brkraw/default/specs/metadata_transforms.py,sha256=illM4MKwwz-6PPKLrIno5lba1f5zKC8y09PAR5gCH1o,2383
 brkraw/resolver/__init__.py,sha256=2vz8b135CA4aebHUHSc2Hgtc3Ko2-qbdAxfTnUtTeGk,84
-brkraw/resolver/affine.py,sha256=s7vm30C5fkmOMTuY-Bc5lZeE3Wy4pbHydL1V4gzkDB4,19501
+brkraw/resolver/affine.py,sha256=cpvpP7r07F_d1dUB71S-G4ysnHfUZ7RqRYNGhy-s_Tk,19755
 brkraw/resolver/datatype.py,sha256=a1bqsGibtnRGGiPKAGbkXj1-Tyjmk52pUPgXM8F2px8,2522
 brkraw/resolver/fid.py,sha256=SXglNSD6hFK7pAoHrUvuNbCYPgIAvbRdh6PACp7Oz7g,2847
 brkraw/resolver/helpers.py,sha256=BpL-zpbtGae6n-XQOmD5qP7KrD5HFnElzAD3bcBq0J4,1029
 brkraw/resolver/image.py,sha256=9G3PRgQnSiU2dS23WxhoV_L-ekWnuY9z9pVwzTOF7ag,10716
-brkraw/resolver/nifti.py,sha256=S4Z1NZdJp0LbipyUndEUoJqQzAjGfoizhGQC9byQG38,12617
+brkraw/resolver/nifti.py,sha256=h4hOWebgMRl0LpNUEPbFybJ3tN9oj7J4zw2wKtABWLo,12635
 brkraw/resolver/shape.py,sha256=r2sQpgKGMN0nmBPj9_LTt7d3ls-y4R8n1HIMDvpNdfk,8110
 brkraw/schema/__init__.py,sha256=eEYYkxX5Hz9woXVOBJ2H2_CQoEih0vH6nRt3sH2Z8v8,49
 brkraw/schema/context_map.yaml,sha256=OUtoa7NgQZ7ytUe8zuNiJ5ratt1p0DRrrfDAP5Kthqs,1798
@@ -85,8 +85,8 @@ brkraw/specs/remapper/validator.py,sha256=R-Pib4MCgUVYAvAAoFR04bF-j7TDaePj-jGaxO
 brkraw/specs/rules/__init__.py,sha256=oF1ury9vxTYMlTgz9Yo9um8jRAzaJeTMwjAcDLV-KOE,214
 brkraw/specs/rules/logic.py,sha256=PbcvkyTjGKJn5CLg_V5QgnWNKirAqRrV3e1YVRx8FyQ,9092
 brkraw/specs/rules/validator.py,sha256=AHS-r-E0HGHxwhhU48nCyS6LQvllQCgXLS_NDXBm3-k,3508
-brkraw-0.5.5.dist-info/METADATA,sha256=stg8aCKjoMzzB0VCtjN7F1GunvD73ybWshFCLwkXcqY,3058
-brkraw-0.5.5.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
-brkraw-0.5.5.dist-info/entry_points.txt,sha256=fdCNXyFoqRsPYXXizC_LS44B9Myjr1dH2tewvtcIN-E,493
-brkraw-0.5.5.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
-brkraw-0.5.5.dist-info/RECORD,,
+brkraw-0.5.6.dist-info/METADATA,sha256=5YOLgPRqjf9maWfpDwSEeup2cFYXrSBBowF79MYD9Hc,3058
+brkraw-0.5.6.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
+brkraw-0.5.6.dist-info/entry_points.txt,sha256=fdCNXyFoqRsPYXXizC_LS44B9Myjr1dH2tewvtcIN-E,493
+brkraw-0.5.6.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
+brkraw-0.5.6.dist-info/RECORD,,