brkraw 0.5.2__py3-none-any.whl → 0.5.5__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (39) hide show
  1. brkraw/__init__.py +1 -1
  2. brkraw/api/__init__.py +122 -0
  3. brkraw/api/types.py +39 -0
  4. brkraw/apps/loader/__init__.py +3 -6
  5. brkraw/apps/loader/core.py +128 -132
  6. brkraw/apps/loader/formatter.py +0 -2
  7. brkraw/apps/loader/helper.py +334 -114
  8. brkraw/apps/loader/info/scan.py +2 -2
  9. brkraw/apps/loader/info/transform.py +0 -1
  10. brkraw/apps/loader/types.py +56 -59
  11. brkraw/cli/commands/addon.py +1 -1
  12. brkraw/cli/commands/cache.py +82 -0
  13. brkraw/cli/commands/config.py +2 -2
  14. brkraw/cli/commands/convert.py +61 -38
  15. brkraw/cli/commands/hook.py +1 -3
  16. brkraw/cli/commands/info.py +1 -1
  17. brkraw/cli/commands/init.py +1 -1
  18. brkraw/cli/commands/params.py +1 -1
  19. brkraw/cli/commands/prune.py +2 -2
  20. brkraw/cli/commands/session.py +1 -11
  21. brkraw/cli/main.py +51 -1
  22. brkraw/cli/utils.py +1 -1
  23. brkraw/core/cache.py +87 -0
  24. brkraw/core/config.py +18 -2
  25. brkraw/core/fs.py +26 -9
  26. brkraw/core/zip.py +46 -32
  27. brkraw/dataclasses/__init__.py +3 -2
  28. brkraw/dataclasses/study.py +73 -23
  29. brkraw/resolver/datatype.py +10 -2
  30. brkraw/resolver/image.py +140 -21
  31. brkraw/resolver/nifti.py +4 -12
  32. brkraw/schema/niftiheader.yaml +0 -2
  33. brkraw/specs/meta/validator.py +0 -1
  34. brkraw/specs/rules/logic.py +1 -3
  35. {brkraw-0.5.2.dist-info → brkraw-0.5.5.dist-info}/METADATA +8 -9
  36. {brkraw-0.5.2.dist-info → brkraw-0.5.5.dist-info}/RECORD +39 -35
  37. {brkraw-0.5.2.dist-info → brkraw-0.5.5.dist-info}/entry_points.txt +1 -0
  38. {brkraw-0.5.2.dist-info → brkraw-0.5.5.dist-info}/WHEEL +0 -0
  39. {brkraw-0.5.2.dist-info → brkraw-0.5.5.dist-info}/licenses/LICENSE +0 -0
@@ -1,4 +1,6 @@
1
- brkraw/__init__.py,sha256=WiNcobSbVDWixYdX-MEL6ROOvP9gpkOa8O8L0l-W36Q,210
1
+ brkraw/__init__.py,sha256=NNoLZss9K8Drck-8uP0v-fmqjTX4pxmlAi1s4ZLsw20,210
2
+ brkraw/api/__init__.py,sha256=y7ZSFdF2uZK5e6ExGt3CQGg-DD5fmT0WouQiplSbwsA,3858
3
+ brkraw/api/types.py,sha256=s11MIkHApOeREQZeIbx1zXz5R4WtYaBIVXD4s47Vnoc,672
2
4
  brkraw/apps/__init__.py,sha256=sEdA1SrY-Vu0xU1ct5Eab7vX-_IFMDip2j3FdSQVT58,170
3
5
  brkraw/apps/addon/__init__.py,sha256=fUR1QNwiaqSbkMIkPxLjKC7mJifR6HhrM8TO7lTo7Mg,531
4
6
  brkraw/apps/addon/core.py,sha256=xVlTElgOHNnoy3avNoeOudOvQSDzvuVsmGq9IVKNINc,659
@@ -7,45 +9,47 @@ brkraw/apps/addon/installation.py,sha256=LeciuHv_5ENg3OjzKClgIMAg3mYs8h3VUvFXmX6
7
9
  brkraw/apps/addon/io.py,sha256=bjgwl0T1tsL02aAJtScLw3fnh2PfOlmK5aGAQj6WF8Y,413
8
10
  brkraw/apps/hook/__init__.py,sha256=W3xf6VmPZkVtQMwnYIrl626fnlck6bO20St0C45tMNY,398
9
11
  brkraw/apps/hook/core.py,sha256=z6PpwHYYESJD8EO__qVsXZj31YqP5JSSmNHYVHZRCnk,20720
10
- brkraw/apps/loader/__init__.py,sha256=ytG3wTI3mRHxkLkZ3GNYA6LJduplYgUinZBMuJJkeMQ,163
11
- brkraw/apps/loader/core.py,sha256=hyc7gk-Bl5g5_bMUdnSY99xjjY9YOt3P0o25QIo0zzE,23268
12
- brkraw/apps/loader/formatter.py,sha256=WWVCVKdZl6vdyKPCW6rLRmwKuF1cCTTNMPP0vmyBF6Y,9341
13
- brkraw/apps/loader/helper.py,sha256=Vf8nqgH3KBGIf74f52wcnB1rINEVViUM2O4W8FeGmNs,27879
14
- brkraw/apps/loader/types.py,sha256=F3EXtV5vEYlHvCBRwjlz3iaTaJiSe7CYC6IayP_bbug,6825
12
+ brkraw/apps/loader/__init__.py,sha256=ih3YNHm2JQpR_5bWNpKwzVImXg4rl6eK8C_40texwr0,101
13
+ brkraw/apps/loader/core.py,sha256=NfwxZyp85CBtjSzT72zU91Hg1MafkVvEnHhvradD6OA,22460
14
+ brkraw/apps/loader/formatter.py,sha256=oiGO942bZMZODxI8kgYE0gdX4FLjwaZTquvZN3yGeeU,9315
15
+ brkraw/apps/loader/helper.py,sha256=dujao_UH8C6aeZQ-GCTwCleoa-ZkrIDYSKlgwSN6gwA,34574
16
+ brkraw/apps/loader/types.py,sha256=0w82elJXF0wYPZQ3eKiPTAR1vdearWnUtNH6CNzyYNo,6226
15
17
  brkraw/apps/loader/info/__init__.py,sha256=1tWVkBakwf3LZK-FwsMrt10fkkdz9cWw1j-Y4Dk6Lio,164
16
- brkraw/apps/loader/info/scan.py,sha256=_oLBG7YlwVUv1vWXBvCZbXQiMvC1ARKCRNTvrAkqO0U,2849
18
+ brkraw/apps/loader/info/scan.py,sha256=omq7d00huVNY2ClMwkEclWWe2a8P3AZV42Xy0vG7YUk,2837
17
19
  brkraw/apps/loader/info/scan.yaml,sha256=tYyGRg4t_rf6jGZAT8F0_dUA9MlQeZ5zeOuTNQ2wQM8,1728
18
20
  brkraw/apps/loader/info/study.py,sha256=0_5gUlDOd5xsmXaYF9pyhwUKsq3-oCZ5SMvH6RqlPp4,2743
19
21
  brkraw/apps/loader/info/study.yaml,sha256=M_wAy-B-4SErZ610KSNiqUW8aotorXkomymMYFdlyJw,3713
20
- brkraw/apps/loader/info/transform.py,sha256=vHYBvRbgRfLBPr1-NMUijiJ_p7S2iJ-SPuZsV4rEWqI,2577
22
+ brkraw/apps/loader/info/transform.py,sha256=gXYtIlbAwaLZX1K7jRFgFAJRG9D-zqlLQ-89BJOhuxM,2558
21
23
  brkraw/cli/__init__.py,sha256=Z97T007Iut9FMPWTRa7MDcUhd9uQhhQ0qmRJ1H4owlw,89
22
24
  brkraw/cli/hook_args.py,sha256=B2CKdSmZqSoQaBW4SMtjCXLLheDt-NJ1VwgvGp4Mtzw,2625
23
- brkraw/cli/main.py,sha256=aqfLycTR_3F-uIEmFi62Q1OUxQ_wwlmQfw-lRfCdPgU,2659
24
- brkraw/cli/utils.py,sha256=Ii14ZqIVqDx-pIrRAtBrL50yzfEQcQZRtJSRWZ211mE,1348
25
+ brkraw/cli/main.py,sha256=OC6BBvSMTZdXz6tdArt163qfvDsldkAXLZ8osBFShFs,4086
26
+ brkraw/cli/utils.py,sha256=dyEFydR7SsKUhSyHESqZqzAVu1zc2iLSA7GwG_OQ6FM,1348
25
27
  brkraw/cli/commands/__init__.py,sha256=PHh4jqD7i0aL8W8hXThczKcT4xsNZiXanBxOH5IOW5I,36
26
- brkraw/cli/commands/addon.py,sha256=yUK30gQ0AGse1WDifW5DLUCg84RlWGemid0uNVOnxzU,11179
27
- brkraw/cli/commands/config.py,sha256=bcbLQpb7Vw_imYwQsds4ZbWAOtgj_Dw3ojmFN4UmMBs,6471
28
- brkraw/cli/commands/convert.py,sha256=8mkJYZCFXKahqqOIN_C4W7F_qbcwR0idYy40cdhZILU,30615
29
- brkraw/cli/commands/hook.py,sha256=nPGIVMlWrpIJDCMdJABKGzV4HcuBdC3bLIh8cqJ8He4,11925
30
- brkraw/cli/commands/info.py,sha256=fwojS5GlEf2upY3v5-ueQQQf9CPWTn46-1-tub2gnxQ,2251
31
- brkraw/cli/commands/init.py,sha256=FLOimOmZbkrCRjTm0iJ8_w8o027He5dzbl3UT2Zu72U,6957
32
- brkraw/cli/commands/params.py,sha256=5z_2O24IrUL-_AEjHIzjZHA_89piDHtXkxHkd7C12D0,3159
33
- brkraw/cli/commands/prune.py,sha256=Sl8Zl78PAGtRvDB6HH-CqcDr4NBfXSrf8602ZAKL7nM,8798
34
- brkraw/cli/commands/session.py,sha256=COEjRwy-Z-Y9_-SZVAwUsIpDutXQ0UQ1baMNvjN6jYU,12749
28
+ brkraw/cli/commands/addon.py,sha256=ctPJ6h_SPFovT1EY6iY-Fyrhfcu0Lo3oCvDz52YsKNM,11179
29
+ brkraw/cli/commands/cache.py,sha256=wyGjM7WjIW8jcwRoEoUpSdlnzCLUTcozpan2KEG8i5Q,2254
30
+ brkraw/cli/commands/config.py,sha256=qWj4yPNDeikLmONZw8-g1C098t-2oGCExJtam-fb6Pk,6480
31
+ brkraw/cli/commands/convert.py,sha256=wWm4inT3Jb5DFNXuB0RZt96DqJ-FSPRvCj7FoVGGqic,31880
32
+ brkraw/cli/commands/hook.py,sha256=esRVd-t_SGJDKvdfNlPd0belOqZNjLGMVXE1l0N1tbc,11889
33
+ brkraw/cli/commands/info.py,sha256=Cog04r1oJYhIGQrfxH9JhLQLt6rwFSfJMuVN38MIDPI,2251
34
+ brkraw/cli/commands/init.py,sha256=4LC0XHmZsGGozoNq2vlGBF6Y1MtbK77Ub7wVbwo9ACc,6957
35
+ brkraw/cli/commands/params.py,sha256=LtYgXdffJ4PuXb5FMcRQhvHpRlFN28MIkpd0UMNx9-Y,3159
36
+ brkraw/cli/commands/prune.py,sha256=RFH0GCkiu9EJNDUHg9lwH2DNBa9A-Yx9sIcUqITRrkg,8791
37
+ brkraw/cli/commands/session.py,sha256=t77PyNZpQoXxpszpqiKsOsKfLg9woXBJA_yinVhuEVk,12299
35
38
  brkraw/core/__init__.py,sha256=9UPOF5mtjZdGgjQ6-JJJs-eg8CGl4BuV7flGDWKgCBg,218
36
- brkraw/core/config.py,sha256=fohxJOoBruBrdzFIrXmBmZE5AW9EpnTOLAr3am8xDM8,11820
39
+ brkraw/core/cache.py,sha256=oF6MOIrywGUrU9l8OweoBVww5ZSqv9BtALjNaPnr59Q,2324
40
+ brkraw/core/config.py,sha256=DBUzzpV0tyop9C96pvFOtGB9gvJzBgFMZgfppE7d6U0,12357
37
41
  brkraw/core/entrypoints.py,sha256=OqEvqBna7fTjR8MofIGJE80EzxL0WUYxeiJEUlQjfR8,880
38
42
  brkraw/core/formatter.py,sha256=5OcJOkQ3mcoRqt6SPib01fA5riObL1wbiJL4rsNwFEw,11387
39
- brkraw/core/fs.py,sha256=IMhdguizZEcrpcx9eb41MKJnfMoLuvoWDhVmV83mW9M,17337
43
+ brkraw/core/fs.py,sha256=GcX6XrtUCFY6zvq6xKZTGHSPSjXKvrN7DPeqe32EN0A,18117
40
44
  brkraw/core/jcamp.py,sha256=TaI-SrhoAA1tXpiVzVqn83NV0OHxTO0tAf_k1YXIWFE,17626
41
45
  brkraw/core/layout.py,sha256=F69Wglkp-3M7LNP3162cU17rWcQ7MSYenFSvXgyJUGY,14253
42
46
  brkraw/core/parameters.py,sha256=_Nl7K0yT149tm0c2SXQbYWhZD5z29ySbZPc78d7zOU8,27983
43
- brkraw/core/zip.py,sha256=m0mixVf4bb116QzAF_3o6-3EDCeq53JhjfKq0NLl5K0,37805
44
- brkraw/dataclasses/__init__.py,sha256=cAYJ_XqyHtpK9OaLaXsjwySbWuIkznrTGa68OnKZFxs,211
47
+ brkraw/core/zip.py,sha256=HOvklnNwUuln4ouo2naITOz0lWTCodV8zOAsL19LrYI,37752
48
+ brkraw/dataclasses/__init__.py,sha256=upsMiK9h-pW1l5MOZgiTTDfyNq2z39PvXo6IN6VJdGI,236
45
49
  brkraw/dataclasses/node.py,sha256=K4K5lNdd2FF7XiQw2bkB2HLtszJphevii0G2uGnam-c,4448
46
50
  brkraw/dataclasses/reco.py,sha256=YbzrOvLbRh83VXxThtN4bnImvphPQLeI-t_iQarvzT8,1068
47
51
  brkraw/dataclasses/scan.py,sha256=VjmT8depuYJzeI4E2sduut-cLZiqf_fIUe06wbvW108,1981
48
- brkraw/dataclasses/study.py,sha256=2qGDDQQgJMHDENVCug_iJ5fUwGLhVhRLwrbgzP60r0g,4540
52
+ brkraw/dataclasses/study.py,sha256=4uV1WNwwYrloMveOu_sAR8oMP4Kku0DCOemgqvQERhI,6322
49
53
  brkraw/default/__init__.py,sha256=eEYYkxX5Hz9woXVOBJ2H2_CQoEih0vH6nRt3sH2Z8v8,49
50
54
  brkraw/default/pruner_specs/deid4share.yaml,sha256=TnQrlF9GGub5wiJ81SQOXALvLfJWHynxY-ZoQ8y_oZs,949
51
55
  brkraw/default/rules/00_default.yaml,sha256=a4PZOR0oam0ziZqLsvaQZqwoDu-uXbPVdxJcm9rSy0o,140
@@ -53,16 +57,16 @@ brkraw/default/specs/metadata_dicom.yaml,sha256=grrwGOBIIEUJPTs6vktWydnEsvBTjbgw
53
57
  brkraw/default/specs/metadata_transforms.py,sha256=illM4MKwwz-6PPKLrIno5lba1f5zKC8y09PAR5gCH1o,2383
54
58
  brkraw/resolver/__init__.py,sha256=2vz8b135CA4aebHUHSc2Hgtc3Ko2-qbdAxfTnUtTeGk,84
55
59
  brkraw/resolver/affine.py,sha256=s7vm30C5fkmOMTuY-Bc5lZeE3Wy4pbHydL1V4gzkDB4,19501
56
- brkraw/resolver/datatype.py,sha256=Kp-_-_JDfCh4io19Vw4YiAVTjWgaFAkxkO7ZDDglAKY,2155
60
+ brkraw/resolver/datatype.py,sha256=a1bqsGibtnRGGiPKAGbkXj1-Tyjmk52pUPgXM8F2px8,2522
57
61
  brkraw/resolver/fid.py,sha256=SXglNSD6hFK7pAoHrUvuNbCYPgIAvbRdh6PACp7Oz7g,2847
58
62
  brkraw/resolver/helpers.py,sha256=BpL-zpbtGae6n-XQOmD5qP7KrD5HFnElzAD3bcBq0J4,1029
59
- brkraw/resolver/image.py,sha256=01mqBVFfoY2Z0V60k3G0qTKpEH-lqRCaSdkZ7pj7Bb8,6735
60
- brkraw/resolver/nifti.py,sha256=otqjDeRZMpplC6Z_uxWMjKoNtxvQyELvwK-ZbVMTuf8,12870
63
+ brkraw/resolver/image.py,sha256=9G3PRgQnSiU2dS23WxhoV_L-ekWnuY9z9pVwzTOF7ag,10716
64
+ brkraw/resolver/nifti.py,sha256=S4Z1NZdJp0LbipyUndEUoJqQzAjGfoizhGQC9byQG38,12617
61
65
  brkraw/resolver/shape.py,sha256=r2sQpgKGMN0nmBPj9_LTt7d3ls-y4R8n1HIMDvpNdfk,8110
62
66
  brkraw/schema/__init__.py,sha256=eEYYkxX5Hz9woXVOBJ2H2_CQoEih0vH6nRt3sH2Z8v8,49
63
67
  brkraw/schema/context_map.yaml,sha256=OUtoa7NgQZ7ytUe8zuNiJ5ratt1p0DRrrfDAP5Kthqs,1798
64
68
  brkraw/schema/meta.yaml,sha256=ePnTt7jD00lMKob6MPoziws9eYOWa-BX2MrVrIMSo90,1042
65
- brkraw/schema/niftiheader.yaml,sha256=Hj7eQNyLbyuT__-jznzAB15JIP9ArRhBGvJstZFGNZg,1499
69
+ brkraw/schema/niftiheader.yaml,sha256=DmxhD6MUSdWb-aloXn3p4KNqqgWx_UVMqXsTJCQkYdw,1471
66
70
  brkraw/schema/pruner.yaml,sha256=bTmxvs5naAt_CsPQC-nIUEF5aL2T-iWUWGhg05ug_Ic,1023
67
71
  brkraw/schema/remapper.yaml,sha256=qIGiT6DqrJ2AK8g7gHj7Cc6GmQIT47VPaB2nRvnNc8k,3622
68
72
  brkraw/schema/rules.yaml,sha256=G9iOoy6B4yyzCAOVpinrrHSXa9QMJj0U_fY8C_mCq7I,2901
@@ -71,7 +75,7 @@ brkraw/specs/hook/__init__.py,sha256=a9cQPvtgUzO7_KeFM0lP8zFgtzOqgMP5e8gyHNX1pRA
71
75
  brkraw/specs/hook/logic.py,sha256=5cg1Sq-0VJgyqfmLR7AmDNxqYIv1IatsfhQYN44FkNQ,801
72
76
  brkraw/specs/hook/validator.py,sha256=x1ibsBUaPpX4cNCKOIoxplIVrXO-R_I0lc3jYKZPA6c,765
73
77
  brkraw/specs/meta/__init__.py,sha256=UbqZCVZEfI_KRCuUEGeD50m8k87PhRtqK_bbQesO3JA,102
74
- brkraw/specs/meta/validator.py,sha256=wvcT20sf9dQszhgPIyXCdjmgZpeTXi796yFxksudKfA,5561
78
+ brkraw/specs/meta/validator.py,sha256=wY0W07TUdCQt9-ddndqTcQhZk71y8Va14KnsHiOUB14,5536
75
79
  brkraw/specs/pruner/__init__.py,sha256=TPeWLvjZY5z5h10fEY1LccLmyAfIe0wLuZk11chjBXQ,316
76
80
  brkraw/specs/pruner/logic.py,sha256=c6mSST6yTgwJD75ORI-G4EtC4Txgbdhu-P0xdzjsxMA,13070
77
81
  brkraw/specs/pruner/validator.py,sha256=prGb55BixiiztbmLSo6x3OfFvwrEP-mjtOvXUwySMXk,4009
@@ -79,10 +83,10 @@ brkraw/specs/remapper/__init__.py,sha256=DXzO8lxlCxfsswPVmPlJgDtbt-Gd_2N9qW_lgbd
79
83
  brkraw/specs/remapper/logic.py,sha256=dWDg06DNRIU3qssX6Iy1g7o5uvqNk7nW4QqrLgZqoQA,30822
80
84
  brkraw/specs/remapper/validator.py,sha256=R-Pib4MCgUVYAvAAoFR04bF-j7TDaePj-jGaxO9uhOU,12208
81
85
  brkraw/specs/rules/__init__.py,sha256=oF1ury9vxTYMlTgz9Yo9um8jRAzaJeTMwjAcDLV-KOE,214
82
- brkraw/specs/rules/logic.py,sha256=w-NstF6o91EfLU2Ho00i8kbvvd7d8yrinPd83UnAW2c,9175
86
+ brkraw/specs/rules/logic.py,sha256=PbcvkyTjGKJn5CLg_V5QgnWNKirAqRrV3e1YVRx8FyQ,9092
83
87
  brkraw/specs/rules/validator.py,sha256=AHS-r-E0HGHxwhhU48nCyS6LQvllQCgXLS_NDXBm3-k,3508
84
- brkraw-0.5.2.dist-info/METADATA,sha256=aiKh8KU2p56JRUrphpEFWK3yAy6mDftJNgY1hUNdCjQ,3075
85
- brkraw-0.5.2.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
86
- brkraw-0.5.2.dist-info/entry_points.txt,sha256=Qd3qG3g8GmGZUlV0gUP7WVpN_ulVn8Qw3l-O-stWxO0,450
87
- brkraw-0.5.2.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
88
- brkraw-0.5.2.dist-info/RECORD,,
88
+ brkraw-0.5.5.dist-info/METADATA,sha256=stg8aCKjoMzzB0VCtjN7F1GunvD73ybWshFCLwkXcqY,3058
89
+ brkraw-0.5.5.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
90
+ brkraw-0.5.5.dist-info/entry_points.txt,sha256=fdCNXyFoqRsPYXXizC_LS44B9Myjr1dH2tewvtcIN-E,493
91
+ brkraw-0.5.5.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
92
+ brkraw-0.5.5.dist-info/RECORD,,
@@ -3,6 +3,7 @@ brkraw = brkraw.cli:main
3
3
 
4
4
  [brkraw.cli]
5
5
  addon = brkraw.cli.commands.addon:register
6
+ cache = brkraw.cli.commands.cache:register
6
7
  config = brkraw.cli.commands.config:register
7
8
  convert = brkraw.cli.commands.convert:register
8
9
  hook = brkraw.cli.commands.hook:register
File without changes