brkraw 0.5.0rc1__py3-none-any.whl → 0.5.1__py3-none-any.whl

brkraw/default/specs/metadata_func.yaml

@@ -1,127 +0,0 @@
-__meta__:
-  name: "metadata_func"
-  version: "0.0.1"
-  description: "Functional (EPI) metadata mapping for BIDS 1.10.1."
-  category: "metadata_spec"
-  include:
-    - "metadata_common.yaml"
-
-TaskName:
-  inputs:
-    value:
-      const: "CHANGE_ME"
-  transform: pick_value
-
-RepetitionTime:
-  sources:
-    - file: visu_pars
-      key: VisuAcqRepetitionTime
-  transform: to_seconds
-
-EchoTime:
-  sources:
-    - file: visu_pars
-      key: VisuAcqEchoTime
-  transform: to_seconds
-
-FlipAngle:
-  sources:
-    - file: visu_pars
-      key: VisuAcqFlipAngle
-
-SliceTiming:
-  inputs:
-    value:
-      const: null
-  transform: pick_value
-
-VolumeTiming:
-  inputs:
-    tr:
-      sources:
-        - file: visu_pars
-          key: VisuAcqRepetitionTime
-    nr:
-      sources:
-        - file: method
-          key: PVM_NRepetitions
-  transform: volume_timing
-
-PhaseEncodingDirection:
-  inputs:
-    value:
-      const: null
-  transform: pick_value
-
-EffectiveEchoSpacing:
-  inputs:
-    value:
-      const: null
-  transform: pick_value
-
-TotalReadoutTime:
-  inputs:
-    value:
-      const: null
-  transform: pick_value
-
-MultibandAccelerationFactor:
-  inputs:
-    value:
-      const: null
-  transform: pick_value
-
-NumberOfVolumesDiscardedByScanner:
-  sources:
-    - file: method
-      key: PVM_DummyScans
-
-NumberOfVolumesDiscardedByUser:
-  inputs:
-    value:
-      const: null
-  transform: pick_value
-
-DelayTime:
-  inputs:
-    value:
-      const: null
-  transform: pick_value
-
-AcquisitionDuration:
-  inputs:
-    value:
-      sources:
-        - file: method
-          key: PVM_ScanTime
-  transform: first_seconds
-
-DelayAfterTrigger:
-  inputs:
-    value:
-      const: null
-  transform: pick_value
-
-Instructions:
-  inputs:
-    value:
-      const: "CHANGE_ME"
-  transform: pick_value
-
-TaskDescription:
-  inputs:
-    value:
-      const: "CHANGE_ME"
-  transform: pick_value
-
-CogAtlasID:
-  inputs:
-    value:
-      const: "https://www.cognitiveatlas.org/fillYourID"
-  transform: pick_value
-
-CogPOID:
-  inputs:
-    value:
-      const: "http://www.cogpo.org/fillYourID"
-  transform: pick_value

brkraw/default/specs/mrs.yaml

@@ -1,71 +0,0 @@
-__meta__:
-  name: "mrs"
-  version: "1.0.0"
-  description: "Metadata mapping for PRESS/STEAM/SLASER sequences."
-  category: "info_spec"
-  transforms_source: "mrs_transforms.py"
-
-Method:
-  sources:
-    - file: method
-      key: Method
-    - file: acqp
-      key: ACQ_method
-  transform: strip_jcamp_string
-
-TR (ms):
-  sources:
-    - file: method
-      key: PVM_RepetitionTime
-    - file: acqp
-      key: ACQ_repetition_time
-  transform: convert_to_list
-
-TE (ms):
-  sources:
-    - file: method
-      key: PVM_EchoTime
-    - file: acqp
-      key: ACQ_echo_time
-  transform: convert_to_list
-
-NumAverage:
-  sources:
-    - file: method
-      key: PVM_NAverages
-    - file: acqp
-      key: NA
-
-Nucleus:
-  sources:
-    - file: method
-      key: PVM_Nucleus1
-    - file: acqp
-      key: NUCLEUS
-  transform: strip_jcamp_string
-
-CenterFrequency (MHz):
-  sources:
-    - file: method
-      key: PVM_SpecFreq
-    - file: acqp
-      key: SFO1
-
-SpectralWidth (Hz):
-  sources:
-    - file: method
-      key: PVM_SpecSW
-    - file: acqp
-      key: SW_h
-
-VoxelSize (mm):
-  sources:
-    - file: method
-      key: PVM_VoxArrSize
-  transform: convert_to_list
-
-VoxelPosition (mm):
-  sources:
-    - file: method
-      key: PVM_VoxArrPosition
-  transform: convert_to_list

brkraw/default/specs/mrs_transforms.py

@@ -1,26 +0,0 @@
-from __future__ import annotations
-
-from typing import Optional, Any, cast
-import re
-
-import numpy as np
-
-
-def strip_jcamp_string(value: Optional[str]) -> str:
-    if value is None:
-        return "Unknown"
-    text = str(value).strip()
-    if text.startswith("<") and text.endswith(">"):
-        text = text[1:-1]
-    text = re.sub(r"\^+", " ", text)
-    return " ".join(text.split())
-
-
-def convert_to_list(value: Any):
-    if value is None:
-        return []
-    if hasattr(value, "tolist"):
-        return cast(Any, value).tolist()
-    if isinstance(value, (list, tuple)):
-        return list(value)
-    return [value]

brkraw/specs/{converter → hook}/__init__.py

@@ -3,10 +3,10 @@ from __future__ import annotations
 from .logic import DEFAULT_GROUP, resolve_hook
 from .validator import validate_hook, CONVERTER_KEYS
 
-
 __all__ = [
     "CONVERTER_KEYS",
     "DEFAULT_GROUP",
     "resolve_hook",
     "validate_hook",
 ]
+