braindecode 1.3.0.dev177069446__py3-none-any.whl → 1.3.0.dev177628147__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (106) hide show
  1. braindecode/augmentation/__init__.py +3 -5
  2. braindecode/augmentation/base.py +5 -8
  3. braindecode/augmentation/functional.py +22 -25
  4. braindecode/augmentation/transforms.py +42 -51
  5. braindecode/classifier.py +16 -11
  6. braindecode/datasets/__init__.py +3 -5
  7. braindecode/datasets/base.py +13 -17
  8. braindecode/datasets/bbci.py +14 -13
  9. braindecode/datasets/bcicomp.py +5 -4
  10. braindecode/datasets/{bids/datasets.py → bids.py} +18 -12
  11. braindecode/datasets/{bids/iterable.py → experimental.py} +6 -8
  12. braindecode/datasets/{bids/hub.py → hub.py} +350 -375
  13. braindecode/datasets/{bids/hub_validation.py → hub_validation.py} +1 -2
  14. braindecode/datasets/mne.py +19 -19
  15. braindecode/datasets/moabb.py +10 -10
  16. braindecode/datasets/nmt.py +56 -58
  17. braindecode/datasets/sleep_physio_challe_18.py +5 -3
  18. braindecode/datasets/sleep_physionet.py +5 -5
  19. braindecode/datasets/tuh.py +18 -21
  20. braindecode/datasets/xy.py +9 -10
  21. braindecode/datautil/__init__.py +3 -3
  22. braindecode/datautil/serialization.py +20 -22
  23. braindecode/datautil/util.py +7 -120
  24. braindecode/eegneuralnet.py +52 -22
  25. braindecode/functional/functions.py +10 -7
  26. braindecode/functional/initialization.py +2 -3
  27. braindecode/models/__init__.py +3 -5
  28. braindecode/models/atcnet.py +39 -43
  29. braindecode/models/attentionbasenet.py +41 -37
  30. braindecode/models/attn_sleep.py +24 -26
  31. braindecode/models/base.py +6 -6
  32. braindecode/models/bendr.py +26 -50
  33. braindecode/models/biot.py +30 -61
  34. braindecode/models/contrawr.py +5 -5
  35. braindecode/models/ctnet.py +35 -35
  36. braindecode/models/deep4.py +5 -5
  37. braindecode/models/deepsleepnet.py +7 -7
  38. braindecode/models/eegconformer.py +26 -31
  39. braindecode/models/eeginception_erp.py +2 -2
  40. braindecode/models/eeginception_mi.py +6 -6
  41. braindecode/models/eegitnet.py +5 -5
  42. braindecode/models/eegminer.py +1 -1
  43. braindecode/models/eegnet.py +3 -3
  44. braindecode/models/eegnex.py +2 -2
  45. braindecode/models/eegsimpleconv.py +2 -2
  46. braindecode/models/eegsym.py +7 -7
  47. braindecode/models/eegtcnet.py +6 -6
  48. braindecode/models/fbcnet.py +2 -2
  49. braindecode/models/fblightconvnet.py +3 -3
  50. braindecode/models/fbmsnet.py +3 -3
  51. braindecode/models/hybrid.py +2 -2
  52. braindecode/models/ifnet.py +5 -5
  53. braindecode/models/labram.py +46 -70
  54. braindecode/models/luna.py +5 -60
  55. braindecode/models/medformer.py +21 -23
  56. braindecode/models/msvtnet.py +15 -15
  57. braindecode/models/patchedtransformer.py +55 -55
  58. braindecode/models/sccnet.py +2 -2
  59. braindecode/models/shallow_fbcsp.py +3 -5
  60. braindecode/models/signal_jepa.py +12 -39
  61. braindecode/models/sinc_shallow.py +4 -3
  62. braindecode/models/sleep_stager_blanco_2020.py +2 -2
  63. braindecode/models/sleep_stager_chambon_2018.py +2 -2
  64. braindecode/models/sparcnet.py +8 -8
  65. braindecode/models/sstdpn.py +869 -869
  66. braindecode/models/summary.csv +17 -19
  67. braindecode/models/syncnet.py +2 -2
  68. braindecode/models/tcn.py +5 -5
  69. braindecode/models/tidnet.py +3 -3
  70. braindecode/models/tsinception.py +3 -3
  71. braindecode/models/usleep.py +7 -7
  72. braindecode/models/util.py +14 -165
  73. braindecode/modules/__init__.py +1 -9
  74. braindecode/modules/activation.py +3 -29
  75. braindecode/modules/attention.py +0 -123
  76. braindecode/modules/blocks.py +1 -53
  77. braindecode/modules/convolution.py +0 -53
  78. braindecode/modules/filter.py +0 -31
  79. braindecode/modules/layers.py +0 -84
  80. braindecode/modules/linear.py +1 -22
  81. braindecode/modules/stats.py +0 -10
  82. braindecode/modules/util.py +0 -9
  83. braindecode/modules/wrapper.py +0 -17
  84. braindecode/preprocessing/preprocess.py +0 -3
  85. braindecode/regressor.py +18 -15
  86. braindecode/samplers/ssl.py +1 -1
  87. braindecode/util.py +28 -38
  88. braindecode/version.py +1 -1
  89. braindecode-1.3.0.dev177628147.dist-info/METADATA +202 -0
  90. braindecode-1.3.0.dev177628147.dist-info/RECORD +114 -0
  91. braindecode/datasets/bids/__init__.py +0 -54
  92. braindecode/datasets/bids/format.py +0 -717
  93. braindecode/datasets/bids/hub_format.py +0 -717
  94. braindecode/datasets/bids/hub_io.py +0 -197
  95. braindecode/datasets/chb_mit.py +0 -163
  96. braindecode/datasets/siena.py +0 -162
  97. braindecode/datasets/utils.py +0 -67
  98. braindecode/models/brainmodule.py +0 -845
  99. braindecode/models/config.py +0 -233
  100. braindecode/models/reve.py +0 -843
  101. braindecode-1.3.0.dev177069446.dist-info/METADATA +0 -230
  102. braindecode-1.3.0.dev177069446.dist-info/RECORD +0 -124
  103. {braindecode-1.3.0.dev177069446.dist-info → braindecode-1.3.0.dev177628147.dist-info}/WHEEL +0 -0
  104. {braindecode-1.3.0.dev177069446.dist-info → braindecode-1.3.0.dev177628147.dist-info}/licenses/LICENSE.txt +0 -0
  105. {braindecode-1.3.0.dev177069446.dist-info → braindecode-1.3.0.dev177628147.dist-info}/licenses/NOTICE.txt +0 -0
  106. {braindecode-1.3.0.dev177069446.dist-info → braindecode-1.3.0.dev177628147.dist-info}/top_level.txt +0 -0
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- Metadata-Version: 2.4
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- Name: braindecode
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- Version: 1.3.0.dev177069446
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- Summary: Deep learning software to decode EEG, ECG or MEG signals
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- Author-email: Robin Tibor Schirrmeister <robintibor@gmail.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Alexandre Gramfort <agramfort@meta.com>
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- Maintainer-email: Alexandre Gramfort <agramfort@meta.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Robin Tibor Schirrmeister <robintibor@gmail.com>
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- License: BSD-3-Clause
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- Project-URL: homepage, https://braindecode.org
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- Project-URL: repository, https://github.com/braindecode/braindecode
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- Project-URL: documentation, https://braindecode.org/stable/index.html
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- Keywords: python,deep-learning,neuroscience,pytorch,meg,eeg,neuroimaging,electroencephalography,magnetoencephalography,electrocorticography,ecog,electroencephalogram
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- Classifier: Development Status :: 3 - Alpha
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- Classifier: Intended Audience :: Developers
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- Classifier: Intended Audience :: Science/Research
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- Classifier: Topic :: Software Development :: Build Tools
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- Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
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- Classifier: Programming Language :: Python :: 3.11
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- Classifier: Programming Language :: Python :: 3.12
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- Classifier: Programming Language :: Python :: 3.13
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- Classifier: Programming Language :: Python :: 3.14
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- Requires-Python: >=3.11
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- Description-Content-Type: text/x-rst
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- License-File: LICENSE.txt
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- License-File: NOTICE.txt
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- Requires-Dist: torch>=2.2
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- Requires-Dist: torchaudio>=2.0
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- Requires-Dist: mne>=1.11.0
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- Requires-Dist: mne_bids>=0.16
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- Requires-Dist: h5py
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- Requires-Dist: skorch>=1.3.0
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- Requires-Dist: joblib
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- Requires-Dist: torchinfo
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- Requires-Dist: wfdb
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- Requires-Dist: linear_attention_transformer
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- Requires-Dist: docstring_inheritance
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- Requires-Dist: rotary_embedding_torch
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- Provides-Extra: moabb
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- Requires-Dist: moabb>=1.4.3; extra == "moabb"
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- Provides-Extra: eegprep
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- Requires-Dist: eegprep[eeglabio]>=0.2.23; extra == "eegprep"
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- Provides-Extra: hub
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- Requires-Dist: huggingface_hub[torch]>=0.20.0; extra == "hub"
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- Requires-Dist: zarr>=3.0; extra == "hub"
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- Provides-Extra: tests
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- Requires-Dist: pytest; extra == "tests"
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- Requires-Dist: pytest-cov; extra == "tests"
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- Requires-Dist: codecov; extra == "tests"
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- Requires-Dist: pytest_cases; extra == "tests"
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- Requires-Dist: mypy; extra == "tests"
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- Requires-Dist: transformers>=4.57.0; extra == "tests"
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- Requires-Dist: bids_validator; extra == "tests"
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- Provides-Extra: typing
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- Requires-Dist: exca==0.4; extra == "typing"
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- Requires-Dist: numpydantic>=1.7; extra == "typing"
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- Provides-Extra: docs
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- Requires-Dist: sphinx_gallery; extra == "docs"
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- Requires-Dist: sphinx_rtd_theme; extra == "docs"
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- Requires-Dist: sphinx-autodoc-typehints; extra == "docs"
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- Requires-Dist: sphinx-autobuild; extra == "docs"
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- Requires-Dist: sphinxcontrib-bibtex; extra == "docs"
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- Requires-Dist: sphinx_sitemap; extra == "docs"
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- Requires-Dist: pydata_sphinx_theme; extra == "docs"
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- Requires-Dist: numpydoc; extra == "docs"
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- Requires-Dist: memory_profiler; extra == "docs"
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- Requires-Dist: pillow; extra == "docs"
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- Requires-Dist: ipython; extra == "docs"
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- Requires-Dist: sphinx_design; extra == "docs"
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- Requires-Dist: lightning; extra == "docs"
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- Requires-Dist: seaborn; extra == "docs"
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- Requires-Dist: pre-commit; extra == "docs"
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- Requires-Dist: openneuro-py; extra == "docs"
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- Requires-Dist: plotly; extra == "docs"
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- Requires-Dist: shap; extra == "docs"
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- Requires-Dist: nbformat; extra == "docs"
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- Requires-Dist: transformers; extra == "docs"
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- Provides-Extra: all
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- Requires-Dist: braindecode[moabb]; extra == "all"
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- Requires-Dist: braindecode[tests]; extra == "all"
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- Requires-Dist: braindecode[docs]; extra == "all"
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- Requires-Dist: braindecode[hub]; extra == "all"
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- Requires-Dist: braindecode[eegprep]; extra == "all"
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- Requires-Dist: braindecode[typing]; extra == "all"
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- Dynamic: license-file
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-
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- .. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.8214376.svg
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- :target: https://doi.org/10.5281/zenodo.8214376
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- :alt: DOI
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-
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- .. image:: https://github.com/braindecode/braindecode/workflows/docs/badge.svg
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- :target: https://github.com/braindecode/braindecode/actions
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- :alt: Docs Build Status
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-
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- .. image:: https://github.com/braindecode/braindecode/workflows/tests/badge.svg
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- :target: https://github.com/braindecode/braindecode/actions?query=branch%3Amaster
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- :alt: Test Build Status
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-
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- .. image:: https://codecov.io/gh/braindecode/braindecode/branch/master/graph/badge.svg
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- :target: https://codecov.io/gh/braindecode/braindecode
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- :alt: Code Coverage
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-
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- .. image:: https://img.shields.io/pypi/v/braindecode?color=blue&style=flat-square
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- :target: https://pypi.org/project/braindecode/
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- :alt: PyPI
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-
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- .. image:: https://img.shields.io/pypi/v/braindecode?label=version&color=orange&style=flat-square
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- :target: https://pypi.org/project/braindecode/
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- :alt: Version
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-
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- .. image:: https://img.shields.io/pypi/pyversions/braindecode?style=flat-square
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- :target: https://pypi.org/project/braindecode/
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- :alt: Python versions
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-
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- .. image:: https://pepy.tech/badge/braindecode
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- :target: https://pepy.tech/project/braindecode
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- :alt: Downloads
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-
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- .. |Braindecode| image:: https://user-images.githubusercontent.com/42702466/177958779-b00628aa-9155-4c51-96d1-d8c345aff575.svg
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-
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- .. _braindecode: braindecode.org/
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-
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- #############
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- Braindecode
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- #############
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-
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- Braindecode is an open-source Python toolbox for decoding raw electrophysiological brain
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- data with deep learning models. It includes dataset fetchers, data preprocessing and
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- visualization tools, as well as implementations of several deep learning architectures
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- and data augmentations for analysis of EEG, ECoG and MEG.
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-
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- For neuroscientists who want to work with deep learning and deep learning researchers
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- who want to work with neurophysiological data.
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-
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- ##########################
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- Installation Braindecode
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- ##########################
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-
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- 1. Install pytorch from http://pytorch.org/ (you don't need to install torchvision).
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- 2. If you want to download EEG datasets from `MOABB
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- <https://github.com/NeuroTechX/moabb>`_, install it:
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-
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- .. code-block:: bash
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-
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- pip install moabb
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-
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- 3. Install latest release of braindecode via pip:
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-
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- .. code-block:: bash
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-
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- pip install braindecode
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-
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- If you want to install the latest development version of braindecode, please refer to
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- `contributing page
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- <https://github.com/braindecode/braindecode/blob/master/CONTRIBUTING.md>`__
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-
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- ###############
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- Documentation
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- ###############
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-
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- Documentation is online under https://braindecode.org, both in the stable and dev
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- versions.
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-
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- #############################
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- Contributing to Braindecode
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- #############################
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-
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- Guidelines for contributing to the library can be found on the braindecode github:
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-
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- https://github.com/braindecode/braindecode/blob/master/CONTRIBUTING.md
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-
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- ########
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- Citing
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- ########
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-
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- If you use Braindecode in scientific work, please cite the software using the Zenodo DOI
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- shown in the badge below:
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-
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- .. image:: https://zenodo.org/badge/232335424.svg
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- :target: https://doi.org/10.5281/zenodo.8214376
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- :alt: DOI
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-
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- Additionally, we highly encourage you to cite the article that originally introduced the
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- Braindecode library and has served as a foundational reference for many works on deep
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- learning with EEG recordings. Please use the following reference:
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-
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- .. code-block:: bibtex
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-
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- @article {HBM:HBM23730,
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- author = {Schirrmeister, Robin Tibor and Springenberg, Jost Tobias and Fiederer,
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- Lukas Dominique Josef and Glasstetter, Martin and Eggensperger, Katharina and Tangermann, Michael and
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- Hutter, Frank and Burgard, Wolfram and Ball, Tonio},
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- title = {Deep learning with convolutional neural networks for EEG decoding and visualization},
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- journal = {Human Brain Mapping},
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- issn = {1097-0193},
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- url = {http://dx.doi.org/10.1002/hbm.23730},
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- doi = {10.1002/hbm.23730},
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- month = {aug},
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- year = {2017},
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- keywords = {electroencephalography, EEG analysis, machine learning, end-to-end learning, brain–machine interface,
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- brain–computer interface, model interpretability, brain mapping},
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- }
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-
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- as well as the `MNE-Python <https://mne.tools>`_ software that is used by braindecode:
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-
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- .. code-block:: bibtex
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-
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- @article{10.3389/fnins.2013.00267,
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- author={Gramfort, Alexandre and Luessi, Martin and Larson, Eric and Engemann, Denis and Strohmeier, Daniel and Brodbeck, Christian and Goj, Roman and Jas, Mainak and Brooks, Teon and Parkkonen, Lauri and Hämäläinen, Matti},
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- title={{MEG and EEG data analysis with MNE-Python}},
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- journal={Frontiers in Neuroscience},
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- volume={7},
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- pages={267},
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- year={2013},
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- url={https://www.frontiersin.org/article/10.3389/fnins.2013.00267},
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- doi={10.3389/fnins.2013.00267},
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- issn={1662-453X},
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- }
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-
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- ***********
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- Licensing
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- ***********
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-
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- This project is primarily licensed under the BSD-3-Clause License.
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-
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- Additional Components
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- =====================
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-
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- Some components within this repository are licensed under the Creative Commons
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- Attribution-NonCommercial 4.0 International License.
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-
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- Please refer to the ``LICENSE`` and ``NOTICE`` files for more detailed information.
@@ -1,124 +0,0 @@
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- braindecode/__init__.py,sha256=Ac3LEEyIHWFY_fFh3eAY1GZUqXcUxVSJwOSUCwGEDvQ,182
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- braindecode/classifier.py,sha256=7kC_oY_UzHEes_WWdCvEpiA1ZKxMeuLL5tIPp5rfcpg,9629
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- braindecode/datasets/moabb.py,sha256=55ZDzFozlaN7vuFIHqCF281s-SJmQOUuwYzlBhgQHOU,7338
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- braindecode/datasets/registry.py,sha256=Sa28uzH3dUzeFWsttFXwI5GW7SU_1Tjl_j2ayoj-RAM,2771
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