braindecode 1.3.0.dev173691341__py3-none-any.whl → 1.3.0.dev174613006__py3-none-any.whl

braindecode/datasets/sleep_physio_challe_18.py

@@ -22,7 +22,6 @@ from mne.datasets.utils import _get_path
 from mne.utils import warn
 
 from braindecode.datasets import BaseConcatDataset, BaseDataset
-from braindecode.preprocessing.preprocess import _preprocess
 
 PC18_DIR = op.join(op.dirname(__file__), "data", "pc18")
 PC18_RECORDS = op.join(PC18_DIR, "sleep_records.csv")
@@ -407,6 +406,8 @@ class SleepPhysionetChallenge2018(BaseConcatDataset):
         base_dataset = BaseDataset(raw_file, desc)
 
         if preproc is not None:
+            from braindecode.preprocessing.preprocess import _preprocess
+
             _preprocess(base_dataset, None, preproc)
 
         return base_dataset

braindecode/models/biot.py

@@ -17,7 +17,7 @@ class BIOT(EEGModuleMixin, nn.Module):
 
     BIOT: Cross-data Biosignal Learning in the Wild.
 
-    BIOT is a large language model for biosignal classification. It is
+    BIOT is a large brain model for biosignal classification. It is
     a wrapper around the `BIOTEncoder` and `ClassificationHead` modules.
 
     It is designed for N-dimensional biosignal data such as EEG, ECG, etc.

braindecode/models/summary.csv

@@ -2,7 +2,7 @@
 ATCNet,General,Classification,250,"n_chans, n_outputs, n_times",113732,"ATCNet(n_chans=22, n_outputs=4, n_times=1000)","Convolution,Recurrent,Small Attention"
 AttentionBaseNet,Motor Imagery,Classification,250,"n_chans, n_outputs, n_times",3692,"AttentionBaseNet(n_chans=22, n_outputs=4, n_times=1000)","Convolution,Small Attention"
 BDTCN,Normal Abnormal,Classification,100,"n_chans, n_outputs, n_times",456502,"BDTCN(n_chans=21, n_outputs=2, n_times=6000, n_blocks=5, n_filters=55, kernel_size=16)","Convolution,Recurrent"
-BIOT,"Sleep Staging, Epilepsy",Classification,200,"n_chans, n_outputs",3183879,"BIOT(n_chans=2,  n_outputs=5,  n_times=6000)","Large Language Model"
+BIOT,"Sleep Staging, Epilepsy",Classification,200,"n_chans, n_outputs",3183879,"BIOT(n_chans=2,  n_outputs=5,  n_times=6000)","Large Brain Model"
 ContraWR,Sleep Staging,"Classification, Embedding",125,"n_chans, n_outputs, sfreq",1160165,"ContraWR(n_chans=2, n_outputs=5, n_times=3750, emb_size=256, sfreq=125)",Convolution
 CTNet,Motor Imagery,Classification,250,"n_chans, n_outputs, n_times",26900,"CTNet(n_chans=22, n_outputs=4, n_times=1000, n_filters_time=8, kernel_size=16, heads=2, emb_size=16)","Convolution,Small Attention"
 Deep4Net,General,Classification,250,"n_chans, n_outputs, n_times",282879,"Deep4Net(n_chans=22, n_outputs=4, n_times=1000)","Convolution"
@@ -16,13 +16,13 @@ EEGNeX,Motor Imagery,Classification,125,"n_chans, n_outputs, n_times",55940,"EEG
 EEGMiner,Emotion Recognition,Classification,128,"n_chans, n_outputs, n_times, sfreq",7572,"EEGMiner(n_chans=62, n_outputs=2, n_times=2560, sfreq=128)","Convolution,Interpretability"
 EEGSimpleConv,Motor Imagery,Classification,80,"n_chans, n_outputs, sfreq",730404,"EEGSimpleConv(n_chans=22,  n_outputs=4,  n_times=320, sfreq=80)","Convolution"
 EEGTCNet,Motor Imagery,Classification,250,"n_chans, n_outputs",4516,"EEGTCNet(n_chans=22,  n_outputs=4,  n_times=1000, kern_length=32)","Convolution,Recurrent"
-Labram,General,"Classification, Embedding",200,"n_chans, n_outputs, n_times",5866180,"Labram(n_chans=22, n_outputs=4, n_times=1000, sfreq=250)","Convolution,Large Language Model"
+Labram,General,"Classification, Embedding",200,"n_chans, n_outputs, n_times",5866180,"Labram(n_chans=22, n_outputs=4, n_times=1000, sfreq=250)","Convolution,Large Brain Model"
 MSVTNet,Motor Imagery,Classification,250,"n_chans, n_outputs, n_times",75494," MSVTNet(n_chans=22,  n_outputs=4,  n_times=1000)","Convolution,Recurrent,Small Attention"
 SCCNet,Motor Imagery,Classification,125,"n_chans, n_outputs, n_times, sfreq",12070,"SCCNet(n_chans=22,  n_outputs=4,  n_times=1000, sfreq=125)","Convolution"
-SignalJEPA,"Motor Imagery, ERP, SSVEP",Embedding,128,"n_times, chs_info",3456882,"SignalJEPA(n_times=512, chs_info=Lee2019_MI().get_data(subjects=[1])[1]['0']['1train'].info[""chs""][:62])","Convolution,Channel,Large Language Model"
-SignalJEPA_Contextual,"Motor Imagery, ERP, SSVEP",Classification,128,"n_outputs, n_times, chs_info",3459184,"SignalJEPA_Contextual(n_outputs=2, input_window_seconds=4.19, sfreq=128, chs_info=Lee2019_MI().get_data(subjects=[1])[1]['0']['1train'].info[""chs""][:62])","Convolution,Channel,Large Language Model"
-SignalJEPA_PostLocal,"Motor Imagery, ERP, SSVEP",Classification,128,"n_chans, n_outputs, n_times",16142,"SignalJEPA_PostLocal(n_chans=62, n_outputs=2, input_window_seconds=4.19, sfreq=128)","Convolution,Channel,Large Language Model"
-SignalJEPA_PreLocal,"Motor Imagery, ERP, SSVEP",Classification,128,"n_outputs, n_times, chs_info",16142,"SignalJEPA_PreLocal(n_chans=62, n_outputs=2, input_window_seconds=4.19, sfreq=128)","Convolution,Channel,Large Language Model"
+SignalJEPA,"Motor Imagery, ERP, SSVEP",Embedding,128,"n_times, chs_info",3456882,"SignalJEPA(n_times=512, chs_info=Lee2019_MI().get_data(subjects=[1])[1]['0']['1train'].info[""chs""][:62])","Convolution,Channel,Large Brain Model"
+SignalJEPA_Contextual,"Motor Imagery, ERP, SSVEP",Classification,128,"n_outputs, n_times, chs_info",3459184,"SignalJEPA_Contextual(n_outputs=2, input_window_seconds=4.19, sfreq=128, chs_info=Lee2019_MI().get_data(subjects=[1])[1]['0']['1train'].info[""chs""][:62])","Convolution,Channel,Large Brain Model"
+SignalJEPA_PostLocal,"Motor Imagery, ERP, SSVEP",Classification,128,"n_chans, n_outputs, n_times",16142,"SignalJEPA_PostLocal(n_chans=62, n_outputs=2, input_window_seconds=4.19, sfreq=128)","Convolution,Channel,Large Brain Model"
+SignalJEPA_PreLocal,"Motor Imagery, ERP, SSVEP",Classification,128,"n_outputs, n_times, chs_info",16142,"SignalJEPA_PreLocal(n_chans=62, n_outputs=2, input_window_seconds=4.19, sfreq=128)","Convolution,Channel,Large Brain Model"
 SincShallowNet,Motor Imagery,Classification,250,"n_chans, n_outputs, n_times, sfreq",21892,"SincShallowNet(n_chans=22,  n_outputs=4,  n_times=1000, sfreq=250)","Convolution,Interpretability"
 ShallowFBCSPNet,General,Classification,250,"n_chans, n_outputs, n_times",46084,"ShallowFBCSPNet(n_chans=22,  n_outputs=4,  n_times=1000, sfreq=250)","Convolution"
 SleepStagerBlanco2020,Sleep Staging,Classification,100,"n_chans, n_outputs, n_times",2845,"SleepStagerBlanco2020(n_chans=2, n_outputs=5, n_times=3000, sfreq=100)","Convolution"

braindecode/preprocessing/preprocess.py

@@ -112,6 +112,7 @@ def preprocess(
     n_jobs: int | None = None,
     offset: int = 0,
     copy_data: bool | None = None,
+    parallel_kwargs: dict | None = None,
 ):
     """Apply preprocessors to a concat dataset.
 
@@ -135,6 +136,10 @@ def preprocess(
         and saving very large datasets in chunks to preserve original positions.
     copy_data : bool | None
         Whether the data passed to parallel jobs should be copied or passed by reference.
+    parallel_kwargs : dict | None
+        Additional keyword arguments forwarded to ``joblib.Parallel``.
+        Defaults to None (equivalent to ``{}``).
+        See https://joblib.readthedocs.io/en/stable/generated/joblib.Parallel.html for details.
 
     Returns
     -------
@@ -153,8 +158,12 @@ def preprocess(
 
     parallel_processing = (n_jobs is not None) and (n_jobs != 1)
 
-    job_prefer = "threads" if platform.system() == "Windows" else None
-    list_of_ds = Parallel(n_jobs=n_jobs, prefer=job_prefer)(
+    parallel_params = {} if parallel_kwargs is None else dict(parallel_kwargs)
+    parallel_params.setdefault(
+        "prefer", "threads" if platform.system() == "Windows" else None
+    )
+
+    list_of_ds = Parallel(n_jobs=n_jobs, **parallel_params)(
         delayed(_preprocess)(
             ds,
             i + offset,

braindecode/version.py

@@ -1 +1 @@
-__version__ = "1.3.0.dev173691341"
+__version__ = "1.3.0.dev174613006"

{braindecode-1.3.0.dev173691341.dist-info → braindecode-1.3.0.dev174613006.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: braindecode
-Version: 1.3.0.dev173691341
+Version: 1.3.0.dev174613006
 Summary: Deep learning software to decode EEG, ECG or MEG signals
 Author-email: Robin Tibor Schirrmeister <robintibor@gmail.com>
 Maintainer-email: Alexandre Gramfort <agramfort@meta.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Robin Tibor Schirrmeister <robintibor@gmail.com>

{braindecode-1.3.0.dev173691341.dist-info → braindecode-1.3.0.dev174613006.dist-info}/RECORD

@@ -3,7 +3,7 @@ braindecode/classifier.py,sha256=k9vSCtfQbld0YVleDi5rrrmk6k_k5JYEPPBYcNxYjZ8,980
 braindecode/eegneuralnet.py,sha256=dz8k_-2jV7WqkaX4bQG-dmr-vRT7ZtOwJqomXyC9PTw,15287
 braindecode/regressor.py,sha256=VLfrpiXklwI4onkwue3QmzlBWcvspu0tlrLo9RT1Oiw,9375
 braindecode/util.py,sha256=J-tBcDJNlMTIFW2mfOy6Ko0nsgdP4obRoEVDeg2rFH0,12686
-braindecode/version.py,sha256=id9eK3xCOOB3kwsGNe7fuD6sdV29Io0b3-fvyePKKhk,35
+braindecode/version.py,sha256=B5COw-Jjdz6iqSJFUtYuO2PbfY9dW4unoqg32duC1-o,35
 braindecode/augmentation/__init__.py,sha256=LG7ONqCufYAF9NZt8POIp10lYXb8iSueYkF-CWGK2Ls,1001
 braindecode/augmentation/base.py,sha256=gg7wYsVfa9jfqBddtE03B5ZrPHFFmPl2sa3LOrRnGfo,7325
 braindecode/augmentation/functional.py,sha256=ygkMNEFHaUdRQfk7meMML19FnM406Uf34h-ztKXdJwM,37978
@@ -17,7 +17,7 @@ braindecode/datasets/experimental.py,sha256=Z_uzMNA875-l878LAv7bWiWYJX3QAefmb5qu
 braindecode/datasets/mne.py,sha256=Dg6RZAAwd8TVGrvLOPF5B_JrbyGUWg52vWmn6fLMOQM,6135
 braindecode/datasets/moabb.py,sha256=JmBcFV7QJT8GCgLNNKWgxJVnEVnO5wd9U_uiIqTIxDM,7091
 braindecode/datasets/nmt.py,sha256=E4T8OYBEwWRSjh7VFzmyxaZbf5ufFVEBYYmQEd1ghUU,10430
-braindecode/datasets/sleep_physio_challe_18.py,sha256=KTvUtuarOOYu6PHN6H1vcy4W9xilwtZE08n7JSrk8Cs,15414
+braindecode/datasets/sleep_physio_challe_18.py,sha256=66A86_9VssszKrVXowb0oFyL3xbF1VRqQK5FtW33QlM,15427
 braindecode/datasets/sleep_physionet.py,sha256=jieRx6u-MQ4jn_5Zox_pVV8WjBwXKLv9uq4GXRAZ_58,4087
 braindecode/datasets/tuh.py,sha256=iG1hOtdevzKGEVpeuRFDBOnsW_rWa5zEmMFJfYR1hqg,22867
 braindecode/datasets/xy.py,sha256=xT-nS_5jpuVKJ0SGqc7Ia0FVpqj86UfuzcYQdEGZdp0,2986
@@ -32,7 +32,7 @@ braindecode/models/atcnet.py,sha256=8wq13mTrn0ZAjfbO5E_yfQZo8vT4jYs1f9xA1S6UhI8,
 braindecode/models/attentionbasenet.py,sha256=AK78VvwrZXyJY20zadzDUHl17C-5zcWCd5xPRN7Lr4o,30385
 braindecode/models/attn_sleep.py,sha256=m6sdFfD4en2hHf_TpotLPC1hVweJcYZvjgf12bV5FZg,17822
 braindecode/models/base.py,sha256=9icrWNZBGbh_VLyB9m8g_K1QyK7s3mh8X-hJ29gEbWs,10802
-braindecode/models/biot.py,sha256=T4PymX3penMJcrdfb5Nq6B3P-jyP2laAIu_R9o3uCXo,17512
+braindecode/models/biot.py,sha256=d2P1i_8k98SU3FkN_dKPXcCoFVmyQIIrBbI1-F3g-8E,17509
 braindecode/models/contrawr.py,sha256=eeR_ik4gNZ3rJLM6Mw9gJ2gTMkZ8CU8C4rN_GQMQTAE,10044
 braindecode/models/ctnet.py,sha256=ce5F31q2weBKvg7PL80iDm7za9fhGaCFvNfHoJW_dtg,17315
 braindecode/models/deep4.py,sha256=-s-R3H7so2xlSiPsU226eSwscv1X9xJMYLm3LhZ3mSU,14645
@@ -60,7 +60,7 @@ braindecode/models/sinc_shallow.py,sha256=Ilv8K1XhMGiRTBtQdq7L595i6cEFYOBe0_UDv-
 braindecode/models/sleep_stager_blanco_2020.py,sha256=vXulnDYutEFLM0UPXyAI0YIj5QImUMVEmYZb78j34H8,6034
 braindecode/models/sleep_stager_chambon_2018.py,sha256=8w8IR2PsfG0jSc3o0YVopgHpOvCHNIuMi7-QRJOYEW4,5245
 braindecode/models/sparcnet.py,sha256=MG1OB91guI7ssKRk8GvWlzUvaxo_otaYnbEGzNUZVyg,13973
-braindecode/models/summary.csv,sha256=NfrmnjyfDmWVe2zyNqgczEQcLI910BOS4sICtcKS3gc,6765
+braindecode/models/summary.csv,sha256=z5aXQbPyxS8-Is2dF0DSN_8g7LjCPbGZHvjxEtfQMUw,6747
 braindecode/models/syncnet.py,sha256=nrWJC5ijCSWKVZyRn-dmOuc1t5vk2C6tx8U3U4j5d5Y,8362
 braindecode/models/tcn.py,sha256=SQu56H9zdbcbbDIXZVgZtJg7es8CRAJ7z-IBnmf4UWM,8158
 braindecode/models/tidnet.py,sha256=HSUL1al6gaRbJ-BRYAAs4KDvLuKEvh0NnBfAsPeWMpM,11837
@@ -81,7 +81,7 @@ braindecode/modules/util.py,sha256=tVXEhzeTsYrr_wZ5CiXaq3VYGtC5TmGEEW2hMYjTQAE,2
 braindecode/modules/wrapper.py,sha256=Z-aZ4wxA0psYefMOfj03r7D1XjD4az6GpZpaQoDPJv0,2421
 braindecode/preprocessing/__init__.py,sha256=V0iwdzb6DzpUaCabA7I6HmOqXK_XvTbpP5HaEduSJ4s,776
 braindecode/preprocessing/mne_preprocess.py,sha256=_Jczaitqbx16utsUOhnonEcoExf6jPsWNwVOVvoKFfU,2210
-braindecode/preprocessing/preprocess.py,sha256=gg52Uqo23yqXBckXrph_AFWCSEmrA7JdA54vcCwbrKE,17489
+braindecode/preprocessing/preprocess.py,sha256=da_-Tn1NLPunsZC2-uzzgCYgdm_Xj-CIJjwf_CTMuFs,17899
 braindecode/preprocessing/windowers.py,sha256=6w6mOnroGWnV7tS23UagZZepswaxaL00S45Jr5AViRE,36551
 braindecode/samplers/__init__.py,sha256=TLuO6gXv2WioJdX671MI_CHVSsOfbjnly1Xv9K3_WdA,452
 braindecode/samplers/base.py,sha256=z_Txp9cEwUmIBL0J6FPJbx1cMSsU9l9mxymRCGqNss0,15111
@@ -93,9 +93,9 @@ braindecode/training/scoring.py,sha256=WRkwqbitA3m_dzRnGp2ZIZPge5Nhx9gAEQhIHzeH4
 braindecode/visualization/__init__.py,sha256=4EER_xHqZIDzEvmgUEm7K1bgNKpyZAIClR9ZCkMuY4M,240
 braindecode/visualization/confusion_matrices.py,sha256=qIWMLEHow5CJ7PhGggD8mnD55Le6xhma9HSzt4R33fc,9509
 braindecode/visualization/gradients.py,sha256=KZo-GA0uwiwty2_94j2IjmCR2SKcfPb1Bi3sQq7vpTk,2170
-braindecode-1.3.0.dev173691341.dist-info/licenses/LICENSE.txt,sha256=7rg7k6hyj8m9whQ7dpKbqnCssoOEx_Mbtqb4uSOjljE,1525
-braindecode-1.3.0.dev173691341.dist-info/licenses/NOTICE.txt,sha256=sOxuTbalPxTM8H6VqtvGbXCt_BoOF7JevEYG_knqbm4,620
-braindecode-1.3.0.dev173691341.dist-info/METADATA,sha256=HUX-udj-vDGSJ_ZSfDK4RTWTCq2OEvGz7bUIV_WCB8o,7129
-braindecode-1.3.0.dev173691341.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-braindecode-1.3.0.dev173691341.dist-info/top_level.txt,sha256=pHsWQmSy0uhIez62-HA9j0iaXKvSbUL39ifFRkFnChA,12
-braindecode-1.3.0.dev173691341.dist-info/RECORD,,
+braindecode-1.3.0.dev174613006.dist-info/licenses/LICENSE.txt,sha256=7rg7k6hyj8m9whQ7dpKbqnCssoOEx_Mbtqb4uSOjljE,1525
+braindecode-1.3.0.dev174613006.dist-info/licenses/NOTICE.txt,sha256=sOxuTbalPxTM8H6VqtvGbXCt_BoOF7JevEYG_knqbm4,620
+braindecode-1.3.0.dev174613006.dist-info/METADATA,sha256=FBSmWi13douk5GjH3mHUa9SwZ1RWv1rvDZ85I6T03zg,7129
+braindecode-1.3.0.dev174613006.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+braindecode-1.3.0.dev174613006.dist-info/top_level.txt,sha256=pHsWQmSy0uhIez62-HA9j0iaXKvSbUL39ifFRkFnChA,12
+braindecode-1.3.0.dev174613006.dist-info/RECORD,,