boris-behav-obs 9.7.7__py3-none-any.whl
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- boris/__init__.py +26 -0
- boris/__main__.py +25 -0
- boris/about.py +143 -0
- boris/add_modifier.py +635 -0
- boris/add_modifier_ui.py +303 -0
- boris/advanced_event_filtering.py +455 -0
- boris/analysis_plugins/__init__.py +0 -0
- boris/analysis_plugins/_latency.py +59 -0
- boris/analysis_plugins/irr_cohen_kappa.py +109 -0
- boris/analysis_plugins/irr_cohen_kappa_with_modifiers.py +112 -0
- boris/analysis_plugins/irr_weighted_cohen_kappa.py +157 -0
- boris/analysis_plugins/irr_weighted_cohen_kappa_with_modifiers.py +162 -0
- boris/analysis_plugins/list_of_dataframe_columns.py +22 -0
- boris/analysis_plugins/number_of_occurences.py +22 -0
- boris/analysis_plugins/number_of_occurences_by_independent_variable.py +54 -0
- boris/analysis_plugins/time_budget.py +61 -0
- boris/behav_coding_map_creator.py +1110 -0
- boris/behavior_binary_table.py +305 -0
- boris/behaviors_coding_map.py +239 -0
- boris/boris_cli.py +340 -0
- boris/cmd_arguments.py +49 -0
- boris/coding_pad.py +280 -0
- boris/config.py +785 -0
- boris/config_file.py +356 -0
- boris/connections.py +409 -0
- boris/converters.py +333 -0
- boris/converters_ui.py +225 -0
- boris/cooccurence.py +250 -0
- boris/core.py +5901 -0
- boris/core_qrc.py +15958 -0
- boris/core_ui.py +1107 -0
- boris/db_functions.py +324 -0
- boris/dev.py +134 -0
- boris/dialog.py +1108 -0
- boris/duration_widget.py +238 -0
- boris/edit_event.py +245 -0
- boris/edit_event_ui.py +233 -0
- boris/event_operations.py +1040 -0
- boris/events_cursor.py +61 -0
- boris/events_snapshots.py +596 -0
- boris/exclusion_matrix.py +141 -0
- boris/export_events.py +1006 -0
- boris/export_observation.py +1203 -0
- boris/external_processes.py +332 -0
- boris/geometric_measurement.py +941 -0
- boris/gui_utilities.py +135 -0
- boris/image_overlay.py +72 -0
- boris/import_observations.py +242 -0
- boris/ipc_mpv.py +325 -0
- boris/irr.py +634 -0
- boris/latency.py +244 -0
- boris/measurement_widget.py +161 -0
- boris/media_file.py +115 -0
- boris/menu_options.py +213 -0
- boris/modifier_coding_map_creator.py +1013 -0
- boris/modifiers_coding_map.py +157 -0
- boris/mpv.py +2016 -0
- boris/mpv2.py +2193 -0
- boris/observation.py +1453 -0
- boris/observation_operations.py +2538 -0
- boris/observation_ui.py +679 -0
- boris/observations_list.py +337 -0
- boris/otx_parser.py +442 -0
- boris/param_panel.py +201 -0
- boris/param_panel_ui.py +305 -0
- boris/player_dock_widget.py +198 -0
- boris/plot_data_module.py +536 -0
- boris/plot_events.py +634 -0
- boris/plot_events_rt.py +237 -0
- boris/plot_spectrogram_rt.py +316 -0
- boris/plot_waveform_rt.py +230 -0
- boris/plugins.py +431 -0
- boris/portion/__init__.py +31 -0
- boris/portion/const.py +95 -0
- boris/portion/dict.py +365 -0
- boris/portion/func.py +52 -0
- boris/portion/interval.py +581 -0
- boris/portion/io.py +181 -0
- boris/preferences.py +510 -0
- boris/preferences_ui.py +770 -0
- boris/project.py +2007 -0
- boris/project_functions.py +2041 -0
- boris/project_import_export.py +1096 -0
- boris/project_ui.py +794 -0
- boris/qrc_boris.py +10389 -0
- boris/qrc_boris5.py +2579 -0
- boris/select_modifiers.py +312 -0
- boris/select_observations.py +210 -0
- boris/select_subj_behav.py +286 -0
- boris/state_events.py +197 -0
- boris/subjects_pad.py +106 -0
- boris/synthetic_time_budget.py +290 -0
- boris/time_budget_functions.py +1136 -0
- boris/time_budget_widget.py +1039 -0
- boris/transitions.py +365 -0
- boris/utilities.py +1810 -0
- boris/version.py +24 -0
- boris/video_equalizer.py +159 -0
- boris/video_equalizer_ui.py +248 -0
- boris/video_operations.py +310 -0
- boris/view_df.py +104 -0
- boris/view_df_ui.py +75 -0
- boris/write_event.py +538 -0
- boris_behav_obs-9.7.7.dist-info/METADATA +139 -0
- boris_behav_obs-9.7.7.dist-info/RECORD +109 -0
- boris_behav_obs-9.7.7.dist-info/WHEEL +5 -0
- boris_behav_obs-9.7.7.dist-info/entry_points.txt +2 -0
- boris_behav_obs-9.7.7.dist-info/licenses/LICENSE.TXT +674 -0
- boris_behav_obs-9.7.7.dist-info/top_level.txt +1 -0
boris/duration_widget.py
ADDED
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"""
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widget to edit duration > 24 h or < 0
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https://stackoverflow.com/questions/44380202/creating-a-custom-widget-in-PySide6
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"""
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from decimal import Decimal as dec
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from PySide6.QtWidgets import (
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QWidget,
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QHBoxLayout,
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QPushButton,
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QSpinBox,
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QLabel,
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QSpacerItem,
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QSizePolicy,
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QDoubleSpinBox,
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QStackedWidget,
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QRadioButton,
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)
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from PySide6.QtCore import Signal
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from . import config as cfg
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class Widget_hhmmss(QWidget):
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time_changed_signal = Signal(float)
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def __init__(self, parent=None):
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QWidget.__init__(self, parent=parent)
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lay = QHBoxLayout(self)
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lay.setSpacing(0)
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lay.setContentsMargins(0, 0, 0, 0)
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self.sign = QPushButton("+")
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self.sign.clicked.connect(self.change_sign)
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self.sign.setStyleSheet("font-size:12px;")
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lay.addWidget(self.sign)
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self.hours = QSpinBox()
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self.hours.setValue(0)
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self.hours.setMinimum(0)
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self.hours.setMaximum(2**31 - 1)
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self.hours.valueChanged.connect(self.update_time_value)
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lay.addWidget(self.hours)
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lay.addWidget(QLabel(":"))
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self.minutes = QSpinBox()
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self.minutes.setMinimum(-1)
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self.minutes.setMaximum(60)
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self.minutes.setPrefix("0")
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self.minutes.valueChanged.connect(lambda value, x=self.minutes: self.value_changed(value, x, 0, 59))
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lay.addWidget(self.minutes)
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lay.addWidget(QLabel(":"))
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self.seconds = QSpinBox()
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self.seconds.setMinimum(-1)
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self.seconds.setMaximum(60)
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self.seconds.setPrefix("0")
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self.seconds.valueChanged.connect(lambda value, x=self.seconds: self.value_changed(value, x, 0, 59))
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lay.addWidget(self.seconds)
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lay.addWidget(QLabel(":"))
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self.milliseconds = QSpinBox()
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self.milliseconds.setMinimum(-1)
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self.milliseconds.setMaximum(1000)
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self.milliseconds.setPrefix("00")
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self.milliseconds.valueChanged.connect(lambda value, x=self.milliseconds: self.value_changed(value, x, 0, 999))
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lay.addWidget(self.milliseconds)
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spacerItem = QSpacerItem(40, 20, QSizePolicy.Expanding, QSizePolicy.Minimum)
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lay.addItem(spacerItem)
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self.setLayout(lay)
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def change_sign(self):
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"""
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sign has changed
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"""
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self.sign.setText("+" if self.sign.text() == "-" else "-")
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self.update_time_value()
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def update_time_value(self):
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new_time = self.hours.value() * 3600 + self.minutes.value() * 60 + self.seconds.value() + self.milliseconds.value() / 1000
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if self.sign.text() == "-":
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new_time = -new_time
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self.time_changed_signal.emit(new_time)
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def value_changed(self, new_value, widget, val_min, val_max):
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"""
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time value changed
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"""
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if new_value > val_max:
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widget.setValue(val_min)
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widget.setPrefix("0" if val_max < 100 else "00")
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self.update_time_value()
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return
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if new_value < val_min:
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widget.setValue(val_max)
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widget.setPrefix("")
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self.update_time_value()
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return
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if new_value < 10:
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widget.setPrefix("0" if val_max < 100 else "00")
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elif new_value < 100:
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widget.setPrefix("" if val_max < 100 else "0")
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else:
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widget.setPrefix("")
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self.update_time_value()
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class Widget_seconds(QWidget):
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time_changed_signal = Signal(float)
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def __init__(self, parent=None):
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QWidget.__init__(self, parent=parent)
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lay = QHBoxLayout(self)
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lay.setSpacing(0)
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lay.setContentsMargins(0, 0, 0, 0)
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self.seconds2 = QDoubleSpinBox()
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self.seconds2.setValue(0)
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self.seconds2.setMinimum(-100_000_000)
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self.seconds2.setMaximum(100_000_000)
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self.seconds2.setDecimals(3)
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self.seconds2.valueChanged.connect(self.value_changed)
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lay.addWidget(self.seconds2)
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spacerItem = QSpacerItem(40, 20, QSizePolicy.Expanding, QSizePolicy.Minimum)
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lay.addItem(spacerItem)
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self.setLayout(lay)
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def value_changed(self, v):
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self.time_changed_signal.emit(v)
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class Duration_widget(QWidget):
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def __init__(self, time_value=0, parent=None):
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super().__init__()
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self.time_value = dec(time_value).quantize(dec(".001"))
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lay = QHBoxLayout(self)
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lay.setSpacing(0)
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lay.setContentsMargins(0, 0, 0, 0)
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self.Stack = QStackedWidget()
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self.w1 = Widget_hhmmss()
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self.w1.time_changed_signal.connect(self.time_changed)
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self.Stack.addWidget(self.w1)
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self.w2 = Widget_seconds()
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self.w2.time_changed_signal.connect(self.time_changed)
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self.Stack.addWidget(self.w2)
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lay.addWidget(self.Stack)
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self.format_hhmmss = QRadioButton("HH:MM:SS:MS")
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self.format_hhmmss.setChecked(True)
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self.format_hhmmss.clicked.connect(self.set_format_hhmmss)
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lay.addWidget(self.format_hhmmss)
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self.format_s = QRadioButton("seconds")
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self.format_s.clicked.connect(self.set_format_s)
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lay.addWidget(self.format_s)
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lay.addItem(QSpacerItem(40, 20, QSizePolicy.Expanding, QSizePolicy.Minimum))
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self.setLayout(lay)
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self.set_time(self.time_value)
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def time_changed(self, x):
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"""
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widget time has changed
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"""
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self.time_value = x
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def set_time(self, new_time):
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if new_time.is_nan():
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return
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self.w1.sign.setText("-" if new_time < 0 else "+")
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h = int(abs(new_time) // 3600)
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m = int((abs(new_time) - h * 3600) // 60)
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s = int((abs(new_time) - h * 3600 - m * 60))
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ms = round((abs(new_time) - h * 3600 - m * 60 - s) * 1000)
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self.w1.hours.setValue(h)
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self.w1.minutes.setValue(m)
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self.w1.seconds.setValue(s)
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self.w1.milliseconds.setValue(ms)
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self.w2.seconds2.setValue(new_time)
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self.time_value = new_time
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def set_format_s(self):
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"""
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switch to seconds widget
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"""
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self.format_s.setChecked(True)
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self.w2.seconds2.setValue(self.time_value)
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self.Stack.setCurrentIndex(1)
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def set_format_hhmmss(self):
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"""
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switch to HHMMSS widget
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"""
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self.format_hhmmss.setChecked(True)
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self.set_time(self.time_value)
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self.Stack.setCurrentIndex(0)
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def set_format(self, time_format):
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"""
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switch time format in base of time_format value
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"""
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if time_format in [cfg.HHMMSS, cfg.HHMMSSZZZ]:
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self.set_format_hhmmss()
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if time_format in [cfg.S]:
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self.set_format_s()
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def get_time(self) -> dec:
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"""
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return time displayed by widget in seconds
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"""
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return dec(self.time_value).quantize(dec(".001"))
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boris/edit_event.py
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"""
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BORIS
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Behavioral Observation Research Interactive Software
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Copyright 2012-2025 Olivier Friard
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This file is part of BORIS.
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BORIS is free software; you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
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the Free Software Foundation; either version 3 of the License, or
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any later version.
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BORIS is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
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You should have received a copy of the GNU General Public License
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along with this program; if not see <http://www.gnu.org/licenses/>.
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"""
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from decimal import Decimal as dec
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import logging
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from PySide6.QtWidgets import (
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QDialog,
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QHBoxLayout,
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QLabel,
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QLineEdit,
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QListWidget,
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QMessageBox,
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QPushButton,
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QRadioButton,
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QVBoxLayout,
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)
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from . import config as cfg
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from . import dialog
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from .edit_event_ui import Ui_Form
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class DlgEditEvent(QDialog, Ui_Form):
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def __init__(
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self,
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observation_type: str,
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time_value: dec = dec("NaN"),
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48
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image_idx=None,
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49
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current_time=0,
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time_format: str = cfg.S,
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show_set_current_time: bool = False,
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exif_date_time: dec | None = None,
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parent=None,
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):
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super().__init__(parent)
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self.setupUi(self)
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self.time_value = time_value
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self.image_idx = image_idx
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self.observation_type = observation_type
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+
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self.pb_set_to_current_time.setVisible(show_set_current_time)
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self.current_time = current_time
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self.exif_date_time = exif_date_time
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64
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+
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# hide frame index for all observations
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# frame index is determined in base of time
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for w in (
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self.lb_frame_idx,
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self.sb_frame_idx,
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self.cb_set_frame_idx_na,
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):
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w.setVisible(False)
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73
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# hide image index
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if observation_type in (cfg.LIVE, cfg.MEDIA):
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# hide image index
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for w in (
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self.cb_set_time_na,
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self.gb_image_index,
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):
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w.setVisible(False)
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# widget for time
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self.time_widget = dialog.get_time_widget(self.time_value)
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if time_format == cfg.S:
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self.time_widget.rb_seconds.setChecked(True)
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if time_format == cfg.HHMMSS:
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self.time_widget.rb_time.setChecked(True)
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if not self.time_value.is_nan() and int(self.time_value) > cfg.DATE_CUTOFF:
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self.time_widget.rb_datetime.setChecked(True)
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self.horizontalLayout_3.insertWidget(0, self.time_widget)
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if observation_type == cfg.IMAGES:
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# hide frame index widgets
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self.pb_set_to_current_time.setVisible(self.exif_date_time is not None)
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self.sb_image_idx.setValue(self.image_idx)
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self.pb_set_to_current_time.clicked.connect(self.set_to_current_time)
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self.pb_set_to_current_image_index.clicked.connect(self.set_to_current_image_index)
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self.cb_set_time_na.stateChanged.connect(self.time_na)
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# self.cb_set_frame_idx_na.stateChanged.connect(self.frame_idx_na)
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self.pbOK.clicked.connect(self.close_widget)
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self.pbCancel.clicked.connect(self.reject)
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def close_widget(self):
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"""
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close the widget
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"""
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if self.observation_type in (cfg.IMAGES):
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if self.sb_image_idx.value() == 0:
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QMessageBox.warning(self, cfg.programName, "The image index cannot be null")
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return
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self.accept()
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+
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def set_to_current_image_index(self):
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"""
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set image index to current image index
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"""
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if self.observation_type in (cfg.IMAGES):
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self.sb_image_idx.setValue(int(self.current_time))
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def set_to_current_time(self):
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"""
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set time to current media time
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"""
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if self.observation_type in (cfg.LIVE, cfg.MEDIA):
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self.time_widget.set_time(dec(float(self.current_time)))
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133
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+
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134
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if self.observation_type == cfg.IMAGES:
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if self.exif_date_time is not None:
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self.time_widget.set_time(dec(self.exif_date_time))
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def time_na(self):
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"""
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set/unset time to NA
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"""
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logging.debug("time_na function")
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self.time_widget.setVisible(not self.cb_set_time_na.isChecked())
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self.time_widget.setEnabled(not self.cb_set_time_na.isChecked())
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147
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+
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self.pb_set_to_current_time.setVisible(not self.cb_set_time_na.isChecked() and self.exif_date_time is not None)
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self.pb_set_to_current_time.setEnabled(not self.cb_set_time_na.isChecked())
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150
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+
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151
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+
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152
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class EditSelectedEvents(QDialog):
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153
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"""
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154
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"edit selected events" dialog box
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155
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+
"""
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156
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+
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157
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+
def __init__(self):
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158
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super(EditSelectedEvents, self).__init__()
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159
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+
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160
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self.setWindowTitle("Edit selected events")
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161
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+
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162
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hbox = QVBoxLayout(self)
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163
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+
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164
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self.rbSubject = QRadioButton("Subject")
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self.rbSubject.setChecked(False)
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self.rbSubject.toggled.connect(self.rb_changed)
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hbox.addWidget(self.rbSubject)
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self.rbBehavior = QRadioButton("Behavior")
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self.rbBehavior.setChecked(False)
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self.rbBehavior.toggled.connect(self.rb_changed)
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hbox.addWidget(self.rbBehavior)
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173
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174
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self.lb = QLabel("New value")
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hbox.addWidget(self.lb)
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self.newText = QListWidget(self)
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177
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+
hbox.addWidget(self.newText)
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178
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+
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179
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self.rbComment = QRadioButton("Comment")
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180
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self.rbComment.setChecked(False)
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self.rbComment.toggled.connect(self.rb_changed)
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hbox.addWidget(self.rbComment)
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183
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+
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184
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self.lbComment = QLabel("New comment")
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185
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hbox.addWidget(self.lbComment)
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186
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+
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187
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self.commentText = QLineEdit()
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188
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hbox.addWidget(self.commentText)
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189
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+
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190
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hbox2 = QHBoxLayout(self)
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191
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+
self.pbOK = QPushButton("OK")
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192
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+
self.pbOK.clicked.connect(self.pbOK_clicked)
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193
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self.pbCancel = QPushButton("Cancel")
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194
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self.pbCancel.clicked.connect(self.pbCancel_clicked)
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hbox2.addWidget(self.pbCancel)
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hbox2.addWidget(self.pbOK)
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hbox.addLayout(hbox2)
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198
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+
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199
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self.setLayout(hbox)
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200
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+
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201
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def rb_changed(self):
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self.newText.setEnabled(not self.rbComment.isChecked())
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+
self.commentText.setEnabled(self.rbComment.isChecked())
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204
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+
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205
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if self.rbSubject.isChecked():
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self.newText.clear()
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207
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self.newText.addItems(self.all_subjects)
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208
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+
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209
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if self.rbBehavior.isChecked():
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210
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self.newText.clear()
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211
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self.newText.addItems(self.all_behaviors)
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212
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+
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213
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if self.rbComment.isChecked():
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214
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self.newText.clear()
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215
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+
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216
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def pbOK_clicked(self):
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217
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"""
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218
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if not self.rbSubject.isChecked() and not self.rbBehavior.isChecked() and not self.rbComment.isChecked():
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219
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QMessageBox.warning(
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220
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+
None,
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221
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+
cfg.programName,
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222
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+
"You must select a field to be edited",
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223
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+
QMessageBox.Ok | QMessageBox.Default,
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224
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+
QMessageBox.NoButton,
|
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225
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+
)
|
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226
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+
return
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227
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+
"""
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228
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+
|
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229
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+
if (self.rbSubject.isChecked() or self.rbBehavior.isChecked()) and self.newText.selectedItems() == []:
|
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230
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+
QMessageBox.warning(
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231
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+
None,
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232
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+
cfg.programName,
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233
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+
"You must select a new value from the list",
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234
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+
QMessageBox.Ok | QMessageBox.Default,
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235
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+
QMessageBox.NoButton,
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236
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+
)
|
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237
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+
return
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238
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+
|
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239
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+
self.accept()
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240
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+
|
|
241
|
+
def pbCancel_clicked(self):
|
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242
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+
"""
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243
|
+
Cancel editing
|
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244
|
+
"""
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245
|
+
self.reject()
|