boris-behav-obs 9.5__py2.py3-none-any.whl → 9.5.2__py2.py3-none-any.whl

boris/analysis_plugins/list_of_dataframe_columns.py

@@ -0,0 +1,22 @@
+"""
+BORIS plugin
+
+number of occurences of behaviors
+"""
+
+import pandas as pd
+
+__version__ = "0.0.1"
+__version_date__ = "2025-06-13"
+__plugin_name__ = "List of dataframe columns"
+__author__ = "Olivier Friard - University of Torino - Italy"
+
+
+def run(df: pd.DataFrame) -> pd.DataFrame:
+    """
+    List the columns present in the dataframe
+    """
+
+    df_results = pd.DataFrame(df.columns, columns=["column name"])
+
+    return df_results

boris/export_observation.py

@@ -691,11 +691,6 @@ def export_aggregated_events(pj: dict, parameters: dict, obsId: str, force_numbe
     # obs description
     obs_description = util.eol2space(observation[cfg.DESCRIPTION])
 
-    """
-    obs_length = observation_operations.observation_total_length(pj[cfg.OBSERVATIONS][obsId])
-    logging.debug(f"obs_length: {obs_length}")
-    """
-
     _, _, connector = db_functions.load_aggregated_events_in_db(
         pj, parameters[cfg.SELECTED_SUBJECTS], [obsId], parameters[cfg.SELECTED_BEHAVIORS]
     )
@@ -798,6 +793,7 @@ def export_aggregated_events(pj: dict, parameters: dict, obsId: str, force_numbe
                     if observation[cfg.TYPE] == cfg.MEDIA:
                         observation_type = "Media file"
 
+                        # get the media file name of the start of event
                         media_file_name = observation_operations.event2media_file_name(observation, row["start"])
                         if media_file_name is None:
                             media_file_name = "Not found"
@@ -842,7 +838,7 @@ def export_aggregated_events(pj: dict, parameters: dict, obsId: str, force_numbe
                             observation["date"].replace("T", " "),
                             obs_description,
                             observation_type,
-                            media_file_str,
+                            media_file_str,  # list of media used in observation
                             pj[cfg.OBSERVATIONS][obsId][cfg.TIME_OFFSET],
                             f"{coding_duration:.3f}" if not coding_duration.is_nan() else cfg.NA,
                             media_durations_str,

boris/observation_operations.py

@@ -1055,8 +1055,6 @@ def new_observation(self, mode: str = cfg.NEW, obsId: str = "") -> None:
             }
 
             if self.pj[cfg.OBSERVATIONS][new_obs_id][cfg.MEDIA_CREATION_DATE_AS_OFFSET]:
-                print("\n", observationWindow.media_creation_time, "\n")
-
                 self.pj[cfg.OBSERVATIONS][new_obs_id][cfg.MEDIA_INFO][cfg.MEDIA_CREATION_TIME] = observationWindow.media_creation_time
 
             try:
@@ -2423,48 +2421,55 @@ def event2media_file_name(observation: dict, timestamp: dec) -> Optional[str]:
         timestamp (dec): time stamp
 
     Returns:
-        str: name of media file containing the event
+        str: path of media file containing the event
     """
+    if observation.get(cfg.MEDIA_CREATION_DATE_AS_OFFSET, False):
+        # media creation date/time was used for coding
+        video_file_name = None
+        for media_path in observation[cfg.MEDIA_INFO].get(cfg.MEDIA_CREATION_TIME, {}):
+            start_media = observation[cfg.MEDIA_INFO][cfg.MEDIA_CREATION_TIME][media_path]
+            duration = observation[cfg.MEDIA_INFO][cfg.LENGTH][media_path]
+            if start_media <= timestamp <= start_media + duration:
+                video_file_name = media_path
+                break
 
-    cumul_media_durations: list = [dec(0)]
-    for media_file in observation[cfg.FILE][cfg.PLAYER1]:
-        try:
-            media_duration = observation[cfg.MEDIA_INFO][cfg.LENGTH][media_file]
-            # cut off media duration to 3 decimal places as that is how fine the player is
-            media_duration = floor(media_duration * 10**3) / dec(10**3)
-            cumul_media_durations.append(floor((cumul_media_durations[-1] + media_duration) * 10**3) / dec(10**3))
-        except KeyError:
-            return None
+    else:  # no media creation date
+        cumul_media_durations: list = [dec(0)]
+        for media_file in observation[cfg.FILE][cfg.PLAYER1]:
+            try:
+                media_duration = observation[cfg.MEDIA_INFO][cfg.LENGTH][media_file]
+                # cut off media duration to 3 decimal places as that is how fine the player is
+                media_duration = floor(media_duration * 10**3) / dec(10**3)
+                cumul_media_durations.append(floor((cumul_media_durations[-1] + media_duration) * 10**3) / dec(10**3))
+            except KeyError:
+                return None
 
-    """
-    cumul_media_durations: list = [dec(0)]
-    for media_file in observation[cfg.FILE][cfg.PLAYER1]:
-        try:
-            media_duration = dec(str(observation[cfg.MEDIA_INFO][cfg.LENGTH][media_file]))
-            cumul_media_durations.append(round(cumul_media_durations[-1] + media_duration, 3))
-        except KeyError:
-            return None
-    """
+        """
+        cumul_media_durations: list = [dec(0)]
+        for media_file in observation[cfg.FILE][cfg.PLAYER1]:
+            try:
+                media_duration = dec(str(observation[cfg.MEDIA_INFO][cfg.LENGTH][media_file]))
+                cumul_media_durations.append(round(cumul_media_durations[-1] + media_duration, 3))
+            except KeyError:
+                return None
+        """
 
-    cumul_media_durations.remove(dec(0))
+        cumul_media_durations.remove(dec(0))
 
-    logging.debug(f"{cumul_media_durations=}")
+        logging.debug(f"{cumul_media_durations=}")
 
-    # test if timestamp is at end of last media
-    if timestamp == cumul_media_durations[-1]:
-        player_idx = len(observation[cfg.FILE][cfg.PLAYER1]) - 1
-    else:
-        player_idx = -1
-        for idx, value in enumerate(cumul_media_durations):
-            start = 0 if idx == 0 else cumul_media_durations[idx - 1]
-            if start <= timestamp < value:
-                player_idx = idx
-                break
+        # test if timestamp is at end of last media
+        if timestamp == cumul_media_durations[-1]:
+            player_idx = len(observation[cfg.FILE][cfg.PLAYER1]) - 1
+        else:
+            player_idx = None
+            for idx, value in enumerate(cumul_media_durations):
+                start = 0 if idx == 0 else cumul_media_durations[idx - 1]
+                if start <= timestamp < value:
+                    player_idx = idx
+                    break
 
-    if player_idx != -1:
-        video_file_name = observation[cfg.FILE][cfg.PLAYER1][player_idx]
-    else:
-        video_file_name = None
+        video_file_name = observation[cfg.FILE][cfg.PLAYER1][player_idx] if player_idx is not None else None
 
     return video_file_name
 

boris/version.py

@@ -20,5 +20,5 @@ This file is part of BORIS.
 
 """
 
-__version__ = "9.5"
-__version_date__ = "2025-06-12"
+__version__ = "9.5.2"
+__version_date__ = "2025-07-15"

{boris_behav_obs-9.5.dist-info → boris_behav_obs-9.5.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: boris-behav-obs
-Version: 9.5
+Version: 9.5.2
 Summary: BORIS - Behavioral Observation Research Interactive Software
 Author-email: Olivier Friard <olivier.friard@unito.it>
 License-Expression: GPL-3.0-only

{boris_behav_obs-9.5.dist-info → boris_behav_obs-9.5.2.dist-info}/RECORD

@@ -30,7 +30,7 @@ boris/events_cursor.py,sha256=VPY_ygD0fxE5lp25mcd2l00XQXurCR6hprffF4tKRbU,2078
 boris/events_snapshots.py,sha256=PjWzQvUGQtIcEc_7FDsRphf7fAhhTccQgYc2eQSA65g,27621
 boris/exclusion_matrix.py,sha256=ff88xD6aqc8bpIuj9ZCz9ju_HeqqgibQwoaJrIOJ6RI,5272
 boris/export_events.py,sha256=3B336WEA0g_8oW3VDo_kfq5D0ISu-e7z2f-_ROUvU9c,39756
-boris/export_observation.py,sha256=SvKhuGa-Ag_kK3igL9DFdJ0TKoQLDneu54R_uiSHUyo,50813
+boris/export_observation.py,sha256=B8ASj6H70xfcTSUHrbcJa6YOYjih2WD4DSiUtXj5eAk,50764
 boris/external_processes.py,sha256=PogE2eEiQLVZ2useMamQMOAeDmMUX_TlIpqPKLMm6Ak,13607
 boris/geometric_measurement.py,sha256=4pI-AYpBSFlJBqS-f8dnkgLtj_Z2E5kwwAdh6WwZ4kk,35049
 boris/gui_utilities.py,sha256=2HdWFxo2y0oxC29VJAA3R-TOMxVbOy3FuVwspjrTD6A,5519
@@ -47,7 +47,7 @@ boris/mpv-1.0.3.py,sha256=EXRtzQqFjOn4wMC6482Ilq3fNQ9N1GRP1VxwLzdeaBY,88077
 boris/mpv.py,sha256=EfzIHjPbgewG4w3smEtqEUPZoVwYmMQkL4Q8ZyW-a58,76410
 boris/mpv2.py,sha256=IUI4t4r9GYX7G5OXTjd3RhMMOkDdfal_15buBgksLsk,92152
 boris/observation.py,sha256=10UkVyY8TDySntIX_-H-IsuFdiF6tEcmC6JQUzD6wYg,57139
-boris/observation_operations.py,sha256=-ryjKz6zTnS-tgB6SSdfZhGWbi3c7nqgcewn5ml9Y04,107271
+boris/observation_operations.py,sha256=xeMtD4K9wN_Hu0d_0G7Btv1Tezkhw_Qwfs1fF2xEg4o,107865
 boris/observation_ui.py,sha256=DAnU94QBNvkLuHT6AxTwqSk_D_n6VUhSl8PexZv_dUk,33309
 boris/observations_list.py,sha256=NqwECGHtHYmKhSe-qCfqPmJ24SSfzlXvIXS2i3op_zE,10591
 boris/otx_parser.py,sha256=70QvilzFHXbjAHR88YH0aEXJ3xxheLS5fZGgHFHGpNE,16367
@@ -78,7 +78,7 @@ boris/time_budget_functions.py,sha256=y5He8crz0xsTxVfz0jATwFFQVnPAIrNHja_0sF6NtR
 boris/time_budget_widget.py,sha256=z-tyITBtIz-KH1H2OdMB5a8x9QQLK7Wu96-zkC6NVDA,43213
 boris/transitions.py,sha256=_aZJfJWv3EBrtmQ7qsdTCayQo6uWU7BXqtQQgflEhr4,12250
 boris/utilities.py,sha256=dD5HpojqlAGLVkr3YnOsaqfbCMHFYroe040ZchB5WnM,56662
-boris/version.py,sha256=IVsvvmK95ywLGRviJkLM91MD9o5TKwRSh9p3TLlk68U,785
+boris/version.py,sha256=r_jFSfQ3dIc0y2gmc77YPeX3ALHmwPPtr0mCN4VgrtY,787
 boris/video_equalizer.py,sha256=FartoGghFK-T53zklP70rPKYqTuzL8qdvfGlsOF2wwc,5854
 boris/video_equalizer_ui.py,sha256=1CG3s79eM4JAbaCx3i1ILZXLceb41_gGXlOLNfpBgnw,10142
 boris/video_operations.py,sha256=mh3iR__Sm2KnV44L_sW2pOo3AgLwlM7wiTnnqQiAVs4,9381
@@ -87,6 +87,7 @@ boris/view_df_ui.py,sha256=CaMeRH_vQ00CTDDFQn73ZZaS-r8BSTWpL-dMCFqzJ_Q,2775
 boris/write_event.py,sha256=RN_cFQZNE2jWbM_BiodL4tsyKT0JPREvUy7xgZnrfaM,24041
 boris/analysis_plugins/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 boris/analysis_plugins/_latency.py,sha256=9kCdFDtb5Zdao1xFpioi_exm_IxyGm6RlY3Opn6GUFo,2030
+boris/analysis_plugins/list_of_dataframe_columns.py,sha256=VEiVhxADtyaIKN4JrfFV02TuTAfWhQ60bf1mHVQp27I,437
 boris/analysis_plugins/number_of_occurences.py,sha256=IDyDrdezqvSKT3BlD8QWpSYk8X9nnBBLI80OUnFJ3bY,509
 boris/analysis_plugins/number_of_occurences_by_independent_variable.py,sha256=t39bmmmZIDCSbcDvVeiKAhKNNP2SdpHp417JczHEnP4,793
 boris/analysis_plugins/time_budget.py,sha256=C1wNYwd5Jugr8h5z2aXRUBY8dF8pD4n953dPwNHY5VY,2244
@@ -96,9 +97,9 @@ boris/portion/dict.py,sha256=SyHxc7PfDw2ufNLFQycwJtzmRfL48rDp4UrM2KN7IWc,11282
 boris/portion/func.py,sha256=3TkQtFKLfsqntwd27HSGHceFhnXHmT-EbNMqktElC5Q,2174
 boris/portion/interval.py,sha256=bAdUiJjGeUAPgsBAImwNeviiwfQq5odfhFZccAWzOTA,20299
 boris/portion/io.py,sha256=ppNeRpiLNrocF1yzGeuEUIhYMf2LfsR-cji3d0nmvUs,6371
-boris_behav_obs-9.5.dist-info/licenses/LICENSE.TXT,sha256=WJ7YI-moTFb-uVrFjnzzhGJrnL9P2iqQe8NuED3hutI,35141
-boris_behav_obs-9.5.dist-info/METADATA,sha256=l3kUWcfdo1i9Tu0fLC4CtMunI3jW5dXHoXXX0SYTf3g,4600
-boris_behav_obs-9.5.dist-info/WHEEL,sha256=JNWh1Fm1UdwIQV075glCn4MVuCRs0sotJIq-J6rbxCU,109
-boris_behav_obs-9.5.dist-info/entry_points.txt,sha256=k__8XvFi4vaA4QFvQehCZjYkKmZH34HSAJI2iYCWrMs,52
-boris_behav_obs-9.5.dist-info/top_level.txt,sha256=fJSgm62S7WesiwTorGbOO4nNN0yzgZ3klgfGi3Px4qI,6
-boris_behav_obs-9.5.dist-info/RECORD,,
+boris_behav_obs-9.5.2.dist-info/licenses/LICENSE.TXT,sha256=WJ7YI-moTFb-uVrFjnzzhGJrnL9P2iqQe8NuED3hutI,35141
+boris_behav_obs-9.5.2.dist-info/METADATA,sha256=pIRDrmyWcnAK10pxpqzXD2dC9t7wDEALlBy99fblRLk,4602
+boris_behav_obs-9.5.2.dist-info/WHEEL,sha256=JNWh1Fm1UdwIQV075glCn4MVuCRs0sotJIq-J6rbxCU,109
+boris_behav_obs-9.5.2.dist-info/entry_points.txt,sha256=k__8XvFi4vaA4QFvQehCZjYkKmZH34HSAJI2iYCWrMs,52
+boris_behav_obs-9.5.2.dist-info/top_level.txt,sha256=fJSgm62S7WesiwTorGbOO4nNN0yzgZ3klgfGi3Px4qI,6
+boris_behav_obs-9.5.2.dist-info/RECORD,,