bmtool 0.6.9.5__py3-none-any.whl → 0.6.9.7__py3-none-any.whl

bmtool/bmplot.py

@@ -1148,14 +1148,14 @@ def plot_entrainment():
     """
     pass
     
-def plot_3d_positions(config=None, populations_list=None, group_by=None, title=None, save_file=None, subset=None):
+def plot_3d_positions(config=None, sources=None, sid=None, title=None, save_file=None, subset=None):
     """
     Plots a 3D graph of all cells with x, y, z location.
     
     Parameters:
     - config: A BMTK simulation config 
-    - populations_list: Which network(s) to plot 
-    - group_by: How to name cell groups
+    - sources: Which network(s) to plot 
+    - sid: How to name cell groups
     - title: Plot title
     - save_file: If plot should be saved
     - subset: Take every Nth row. This will make plotting large network graphs easier to see.
@@ -1164,11 +1164,11 @@ def plot_3d_positions(config=None, populations_list=None, group_by=None, title=N
     if not config:
         raise Exception("config not defined")
     
-    if populations_list is None:
-        populations_list = "all"
+    if sources is None:
+        sources = "all"
     
     # Set group keys (e.g., node types)
-    group_keys = group_by
+    group_keys = sid
     if title is None:
         title = "3D positions"
 
@@ -1176,10 +1176,10 @@ def plot_3d_positions(config=None, populations_list=None, group_by=None, title=N
     nodes = util.load_nodes_from_config(config)
     
     # Get the list of populations to plot
-    if 'all' in populations_list:
+    if 'all' in sources:
         populations = list(nodes)
     else:
-        populations = populations_list.split(",")
+        populations = sources.split(",")
     
     # Split group_by into list 
     group_keys = group_keys.split(",")
@@ -1247,25 +1247,25 @@ def plot_3d_positions(config=None, populations_list=None, group_by=None, title=N
 
     return ax
 
-def plot_3d_cell_rotation(config=None, populations_list=None, group_by=None, title=None, save_file=None, quiver_length=None, arrow_length_ratio=None, group=None, subset=None):
+def plot_3d_cell_rotation(config=None, sources=None, sids=None, title=None, save_file=None, quiver_length=None, arrow_length_ratio=None, group=None, subset=None):
     from scipy.spatial.transform import Rotation as R
     if not config:
         raise Exception("config not defined")
 
-    if populations_list is None:
-        populations_list = ["all"]
+    if sources is None:
+        sources = ["all"]
 
-    group_keys = group_by.split(",") if group_by else []
+    group_keys = sids.split(",") if sids else []
 
     if title is None:
         title = "Cell rotations"
 
     nodes = util.load_nodes_from_config(config)
 
-    if 'all' in populations_list:
+    if 'all' in sources:
         populations = list(nodes)
     else:
-        populations = populations_list
+        populations = sources
 
     fig = plt.figure(figsize=(10, 10))
     ax = fig.add_subplot(111, projection='3d')

{bmtool-0.6.9.5.dist-info → bmtool-0.6.9.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: bmtool
-Version: 0.6.9.5
+Version: 0.6.9.7
 Summary: BMTool
 Home-page: https://github.com/cyneuro/bmtool
 Download-URL: 

{bmtool-0.6.9.5.dist-info → bmtool-0.6.9.7.dist-info}/RECORD

@@ -1,7 +1,7 @@
 bmtool/SLURM.py,sha256=PST_jOD5ZmwbJj15Tgq3UIvdq4FYN4EkPuDt66P8OXU,20136
 bmtool/__init__.py,sha256=ZStTNkAJHJxG7Pwiy5UgCzC4KlhMS5pUNPtUJZVwL_Y,136
 bmtool/__main__.py,sha256=TmFkmDxjZ6250nYD4cgGhn-tbJeEm0u-EMz2ajAN9vE,650
-bmtool/bmplot.py,sha256=bCXg20c8SVKsq8GyWg91x0ObADt1mqSxKUGtFuBudyo,61999
+bmtool/bmplot.py,sha256=TPkdqenzY_ovAISSiGFk98pmoe6Q5_2WoZg9o7nKNWI,61873
 bmtool/connectors.py,sha256=hWkUUcJ4tmas8NDOFPPjQT-TgTlPcpjuZsYyAW2WkPA,72242
 bmtool/graphs.py,sha256=K8BiughRUeXFVvAgo8UzrwpSClIVg7UfmIcvtEsEsk0,6020
 bmtool/manage.py,sha256=_lCU0qBQZ4jSxjzAJUd09JEetb--cud7KZgxQFbLGSY,657
@@ -19,9 +19,9 @@ bmtool/util/commands.py,sha256=zJF-fiLk0b8LyzHDfvewUyS7iumOxVnj33IkJDzux4M,64396
 bmtool/util/util.py,sha256=00vOAwTVIifCqouBoFoT0lBashl4fCalrk8fhg_Uq4c,56654
 bmtool/util/neuron/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 bmtool/util/neuron/celltuner.py,sha256=xSRpRN6DhPFz4q5buq_W8UmsD7BbUrkzYBEbKVloYss,87194
-bmtool-0.6.9.5.dist-info/licenses/LICENSE,sha256=qrXg2jj6kz5d0EnN11hllcQt2fcWVNumx0xNbV05nyM,1068
-bmtool-0.6.9.5.dist-info/METADATA,sha256=bVCdR8-yvdyyAk5lMnD23ClJQWoqHAH2X7MHq3ocGMk,20478
-bmtool-0.6.9.5.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
-bmtool-0.6.9.5.dist-info/entry_points.txt,sha256=0-BHZ6nUnh0twWw9SXNTiRmKjDnb1VO2DfG_-oprhAc,45
-bmtool-0.6.9.5.dist-info/top_level.txt,sha256=gpd2Sj-L9tWbuJEd5E8C8S8XkNm5yUE76klUYcM-eWM,7
-bmtool-0.6.9.5.dist-info/RECORD,,
+bmtool-0.6.9.7.dist-info/licenses/LICENSE,sha256=qrXg2jj6kz5d0EnN11hllcQt2fcWVNumx0xNbV05nyM,1068
+bmtool-0.6.9.7.dist-info/METADATA,sha256=gT33ToBrthsy178V7rOA6nuZsWJCSxl4cYwhC8zwwls,20478
+bmtool-0.6.9.7.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
+bmtool-0.6.9.7.dist-info/entry_points.txt,sha256=0-BHZ6nUnh0twWw9SXNTiRmKjDnb1VO2DfG_-oprhAc,45
+bmtool-0.6.9.7.dist-info/top_level.txt,sha256=gpd2Sj-L9tWbuJEd5E8C8S8XkNm5yUE76klUYcM-eWM,7
+bmtool-0.6.9.7.dist-info/RECORD,,