bmtool 0.6.6.3__py3-none-any.whl → 0.6.6.4__py3-none-any.whl

bmtool/synapses.py

@@ -197,7 +197,7 @@ class SynapseTuner:
             syn_props = {var: slider.value for var, slider in self.dynamic_sliders.items()}
             self._set_syn_prop(**syn_props)
                   
-        # sets values based off optimizer   
+        # sets values based off optimizer 
         if hasattr(self,'using_optimizer'):
             for name, value in zip(self.param_names, self.params):
                 setattr(self.syn, name, value)
@@ -222,7 +222,7 @@ class SynapseTuner:
         h.run()
         
         current = np.array(self.rec_vectors[self.current_name])
-        syn_props = self._get_syn_prop(rise_interval=self.general_settings['rise_interval']) 
+        syn_props = self._get_syn_prop(rise_interval=self.general_settings['rise_interval'],dt=h.dt) 
         current = (current - syn_props['baseline']) * 1000  # Convert to pA
         current_integral = np.trapz(current, dx=h.dt)  # pA·ms
         
@@ -277,7 +277,7 @@ class SynapseTuner:
         if self.vclamp:
             isyn = self.ivcl
         else:
-            isyn = self.rec_vectors['i']
+            isyn = self.rec_vectors[self.current_name]
         isyn = np.asarray(isyn)
         tspk = np.asarray(self.tspk)
         if tspk.size:
@@ -350,7 +350,7 @@ class SynapseTuner:
         
         # Plot synaptic current (always included)
         current = self.rec_vectors[self.current_name]
-        syn_prop = self._get_syn_prop(short=True)
+        syn_prop = self._get_syn_prop(short=True,dt=h.dt)
         current = (current - syn_prop['baseline']) 
         current = current * 1000
         
@@ -447,13 +447,12 @@ class SynapseTuner:
         """
         isyn = np.array(self.rec_vectors[self.current_name].to_python())
         tspk = np.append(np.asarray(self.tspk), h.tstop)
-        syn_prop = self._get_syn_prop(short=True)
+        syn_prop = self._get_syn_prop(short=True,dt=h.dt)
         # print("syn_prp[sign] = " + str(syn_prop['sign']))
         isyn = (isyn - syn_prop['baseline']) 
         isyn *= syn_prop['sign']
         ispk = np.floor((tspk + self.general_settings['delay']) / h.dt).astype(int)
 
-        
         try:        
             amp = [isyn[ispk[i]:ispk[i + 1]].max() for i in range(ispk.size - 1)]
             # indexs of where the max of the synaptic current is at. This is then plotted     
@@ -1159,7 +1158,6 @@ class SynapseOptimizer:
             self.tuner.SingleEvent(plot_and_print=True)
                     
         
-        
 # dataclass means just init the typehints as self.typehint. looks a bit cleaner
 @dataclass
 class GapOptimizationResult:

{bmtool-0.6.6.3.dist-info → bmtool-0.6.6.4.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: bmtool
-Version: 0.6.6.3
+Version: 0.6.6.4
 Summary: BMTool
 Home-page: https://github.com/cyneuro/bmtool
 Download-URL: 

{bmtool-0.6.6.3.dist-info → bmtool-0.6.6.4.dist-info}/RECORD

@@ -7,7 +7,7 @@ bmtool/graphs.py,sha256=K8BiughRUeXFVvAgo8UzrwpSClIVg7UfmIcvtEsEsk0,6020
 bmtool/manage.py,sha256=_lCU0qBQZ4jSxjzAJUd09JEetb--cud7KZgxQFbLGSY,657
 bmtool/plot_commands.py,sha256=Tqujyf0c0u8olhiHOMwgUSJXIIE1hgjv6otb25G9cA0,12298
 bmtool/singlecell.py,sha256=MQiLucsI6OBIjtcJra3Z9PTFQOE-Zn5ST-R9SmFvrbQ,27049
-bmtool/synapses.py,sha256=qxUMeFIUJZweWhYsb24DL5cra9pbzCG61ZL0Rqc3B-8,54535
+bmtool/synapses.py,sha256=gIkfLhKDG2dHHCVJJoKuQrFn_Qut843bfk_-s97wu6c,54553
 bmtool/debug/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 bmtool/debug/commands.py,sha256=AwtcR7BUUheM0NxvU1Nu234zCdpobhJv5noX8x5K2vY,583
 bmtool/debug/debug.py,sha256=xqnkzLiH3s-tS26Y5lZZL62qR2evJdi46Gud-HzxEN4,207
@@ -16,9 +16,9 @@ bmtool/util/commands.py,sha256=zJF-fiLk0b8LyzHDfvewUyS7iumOxVnj33IkJDzux4M,64396
 bmtool/util/util.py,sha256=00vOAwTVIifCqouBoFoT0lBashl4fCalrk8fhg_Uq4c,56654
 bmtool/util/neuron/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 bmtool/util/neuron/celltuner.py,sha256=xSRpRN6DhPFz4q5buq_W8UmsD7BbUrkzYBEbKVloYss,87194
-bmtool-0.6.6.3.dist-info/LICENSE,sha256=qrXg2jj6kz5d0EnN11hllcQt2fcWVNumx0xNbV05nyM,1068
-bmtool-0.6.6.3.dist-info/METADATA,sha256=a4htvjbNJxU3YSs5pGZxezk-v6kDgHnyPODs2H3l8V4,20226
-bmtool-0.6.6.3.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
-bmtool-0.6.6.3.dist-info/entry_points.txt,sha256=0-BHZ6nUnh0twWw9SXNTiRmKjDnb1VO2DfG_-oprhAc,45
-bmtool-0.6.6.3.dist-info/top_level.txt,sha256=gpd2Sj-L9tWbuJEd5E8C8S8XkNm5yUE76klUYcM-eWM,7
-bmtool-0.6.6.3.dist-info/RECORD,,
+bmtool-0.6.6.4.dist-info/LICENSE,sha256=qrXg2jj6kz5d0EnN11hllcQt2fcWVNumx0xNbV05nyM,1068
+bmtool-0.6.6.4.dist-info/METADATA,sha256=loQf1_yqp2RYGGrghu71zSt4TnBtlmBpOSGXlm_21JY,20226
+bmtool-0.6.6.4.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
+bmtool-0.6.6.4.dist-info/entry_points.txt,sha256=0-BHZ6nUnh0twWw9SXNTiRmKjDnb1VO2DfG_-oprhAc,45
+bmtool-0.6.6.4.dist-info/top_level.txt,sha256=gpd2Sj-L9tWbuJEd5E8C8S8XkNm5yUE76klUYcM-eWM,7
+bmtool-0.6.6.4.dist-info/RECORD,,