bluecellulab 2.6.55__py3-none-any.whl → 2.6.57__py3-none-any.whl

bluecellulab/analysis/inject_sequence.py

@@ -11,6 +11,7 @@ from bluecellulab.simulation.parallel import IsolatedProcess
 from bluecellulab.simulation.simulation import Simulation
 from bluecellulab.stimulus.circuit_stimulus_definitions import Hyperpolarizing
 from bluecellulab.stimulus.factory import Stimulus, StimulusFactory
+from bluecellulab.tools import template_accepts_cvode
 from bluecellulab.tools import validate_section_and_segment
 
 
@@ -112,6 +113,9 @@ def run_multirecordings_stimulus(
     current_vector = neuron.h.Vector()
     current_vector.record(iclamp._ref_i)
 
+    if cvode:
+        cvode = template_accepts_cvode(template_params.template_filepath)
+
     simulation = Simulation(cell)
     simulation.run(stimulus.stimulus_time, cvode=cvode)
 

bluecellulab/validation/validation.py

@@ -291,15 +291,17 @@ def hyperpolarization_test(template_params, rheobase, out_dir):
         "stim_end": [IDRestTimings.PRE_DELAY.value + IDRestTimings.DURATION.value],
     }
     features_results = efel.get_feature_values([trace], ["voltage_base", "steady_state_voltage_stimend"])
-    rmp = features_results[0]["voltage_base"][0]
-    ss_voltage = features_results[0]["steady_state_voltage_stimend"][0]
-    if rmp is None or ss_voltage is None:
+    rmp = features_results[0]["voltage_base"]
+    ss_voltage = features_results[0]["steady_state_voltage_stimend"]
+    if rmp is None or len(rmp) == 0 or ss_voltage is None or len(ss_voltage) == 0:
         return {
             "name": name,
             "passed": False,
             "validation_details": "Validation failed: Could not determine RMP or steady state voltage.",
             "figures": [outpath],
         }
+    rmp = rmp[0]
+    ss_voltage = ss_voltage[0]
     hyperpol_bool = bool(ss_voltage < rmp)
 
     notes = (

{bluecellulab-2.6.55.dist-info → bluecellulab-2.6.57.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: bluecellulab
-Version: 2.6.55
+Version: 2.6.57
 Summary: Biologically detailed neural network simulations and analysis.
 Author: Blue Brain Project, EPFL
 License: Apache2.0

{bluecellulab-2.6.55.dist-info → bluecellulab-2.6.57.dist-info}/RECORD

@@ -16,7 +16,7 @@ bluecellulab/utils.py,sha256=0NhwlzyLnSi8kziSfDsQf7pokO4qDkMJVAO33kSX4O0,2227
 bluecellulab/verbosity.py,sha256=T0IgX7DrRo19faxrT4Xzb27gqxzoILQ8FzYKxvUeaPM,1342
 bluecellulab/analysis/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 bluecellulab/analysis/analysis.py,sha256=rZdM7AjjCLFoW7x0d_R6oQPLAasz_R6UxSVgcKTUJW0,21646
-bluecellulab/analysis/inject_sequence.py,sha256=uU6Q6y0ErMDDEgdsTZBXCJ4LgwkATY7G8Fa6mmjpL98,12523
+bluecellulab/analysis/inject_sequence.py,sha256=bpi_C1oz_G5cZv_CvvZG8SnGYaKIlDsIFHdkOAkDm-E,12666
 bluecellulab/analysis/plotting.py,sha256=PqRoaZz33ULMw8A9YnZXXrxcUd84M_dwlYMTFhG7YT4,3999
 bluecellulab/analysis/utils.py,sha256=eMirP557D11BuedgSqjripDxOq1haIldNbnYNetV1bg,121
 bluecellulab/cell/__init__.py,sha256=Sbc0QOsJ8E7tSwf3q7fsXuE_SevBN6ZmoCVyyU5zfII,208
@@ -67,10 +67,10 @@ bluecellulab/stimulus/stimulus.py,sha256=a_hKJUtZmIgjiFjbJf6RzUPokELqn0IHCgIWGw5
 bluecellulab/synapse/__init__.py,sha256=RW8XoAMXOvK7OG1nHl_q8jSEKLj9ZN4oWf2nY9HAwuk,192
 bluecellulab/synapse/synapse_factory.py,sha256=NHwRMYMrnRVm_sHmyKTJ1bdoNmWZNU4UPOGu7FCi-PE,6987
 bluecellulab/synapse/synapse_types.py,sha256=zs_yBvGTH4QrbQF3nEViidyq1WM_ZcTSFdjUxB3khW0,16871
-bluecellulab/validation/validation.py,sha256=-wNn76QndoYPrC0C2cKEG3gw3ytPv7uTQ8UFj6xtT_0,17066
-bluecellulab-2.6.55.dist-info/licenses/AUTHORS.txt,sha256=EDs3H-2HXBojbma10psixk3C2rFiOCTIREi2ZAbXYNQ,179
-bluecellulab-2.6.55.dist-info/licenses/LICENSE,sha256=dAMAR2Sud4Nead1wGFleKiwTZfkTNZbzmuGfcTKb3kg,11335
-bluecellulab-2.6.55.dist-info/METADATA,sha256=UxdniluN31-Q37BEUaajlCM3swrfn6HHEOsgj2P1kB8,8259
-bluecellulab-2.6.55.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-bluecellulab-2.6.55.dist-info/top_level.txt,sha256=VSyEP8w9l3pXdRkyP_goeMwiNA8KWwitfAqUkveJkdQ,13
-bluecellulab-2.6.55.dist-info/RECORD,,
+bluecellulab/validation/validation.py,sha256=00g16X9ngQeVxKpec4SpXb8oTJ3qzfTfifEP5D8AWVE,17149
+bluecellulab-2.6.57.dist-info/licenses/AUTHORS.txt,sha256=EDs3H-2HXBojbma10psixk3C2rFiOCTIREi2ZAbXYNQ,179
+bluecellulab-2.6.57.dist-info/licenses/LICENSE,sha256=dAMAR2Sud4Nead1wGFleKiwTZfkTNZbzmuGfcTKb3kg,11335
+bluecellulab-2.6.57.dist-info/METADATA,sha256=xzTnRYLR2MSR8x0mNnKVnhqOol-zmA2hNJcHkxBvovg,8259
+bluecellulab-2.6.57.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+bluecellulab-2.6.57.dist-info/top_level.txt,sha256=VSyEP8w9l3pXdRkyP_goeMwiNA8KWwitfAqUkveJkdQ,13
+bluecellulab-2.6.57.dist-info/RECORD,,