bluecellulab 2.6.48__py3-none-any.whl → 2.6.49__py3-none-any.whl
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- bluecellulab/validation/validation.py +8 -5
- {bluecellulab-2.6.48.dist-info → bluecellulab-2.6.49.dist-info}/METADATA +1 -1
- {bluecellulab-2.6.48.dist-info → bluecellulab-2.6.49.dist-info}/RECORD +7 -7
- {bluecellulab-2.6.48.dist-info → bluecellulab-2.6.49.dist-info}/WHEEL +1 -1
- {bluecellulab-2.6.48.dist-info → bluecellulab-2.6.49.dist-info}/licenses/AUTHORS.txt +0 -0
- {bluecellulab-2.6.48.dist-info → bluecellulab-2.6.49.dist-info}/licenses/LICENSE +0 -0
- {bluecellulab-2.6.48.dist-info → bluecellulab-2.6.49.dist-info}/top_level.txt +0 -0
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@@ -324,15 +324,18 @@ def fi_test(cell, rheobase, out_dir, spike_threshold_voltage=-30.):
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}
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def run_validations(
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def run_validations(
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cell, cell_name, spike_threshold_voltage=-30, output_dir="./memodel_validation_figures"
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):
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"""Run all the validations on the cell.
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Args:
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cell (Cell): The cell to validate.
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cell_name (str): The name of the cell, used in the output directory.
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spike_threshold_voltage (float): The voltage threshold for spike detection.
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output_dir (str): The directory to save the validation figures.
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"""
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out_dir = pathlib.Path(
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out_dir = pathlib.Path(output_dir) / cell_name
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out_dir.mkdir(parents=True, exist_ok=True)
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# cell = Cell.from_template_parameters(template_params)
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@@ -387,9 +390,9 @@ def run_validations(cell, cell_name, spike_threshold_voltage=-30):
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return {
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"memodel_properties": {
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"holding_current": holding_current,
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"rheobase": rheobase,
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"rin": rin,
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"holding_current": float(holding_current),
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"rheobase": float(rheobase),
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"rin": float(rin),
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},
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"spiking_test": spiking_test_result,
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"depolarization_block_test": depolarization_block_result,
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@@ -65,10 +65,10 @@ bluecellulab/stimulus/stimulus.py,sha256=a_hKJUtZmIgjiFjbJf6RzUPokELqn0IHCgIWGw5
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bluecellulab/synapse/__init__.py,sha256=RW8XoAMXOvK7OG1nHl_q8jSEKLj9ZN4oWf2nY9HAwuk,192
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bluecellulab/synapse/synapse_factory.py,sha256=NHwRMYMrnRVm_sHmyKTJ1bdoNmWZNU4UPOGu7FCi-PE,6987
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bluecellulab/synapse/synapse_types.py,sha256=zs_yBvGTH4QrbQF3nEViidyq1WM_ZcTSFdjUxB3khW0,16871
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bluecellulab/validation/validation.py,sha256=
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bluecellulab-2.6.
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bluecellulab-2.6.
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bluecellulab/validation/validation.py,sha256=irP617pC2fdT_wJafaedkSTDHJ-5I2Badml5jj_b-OI,13141
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bluecellulab-2.6.49.dist-info/licenses/AUTHORS.txt,sha256=EDs3H-2HXBojbma10psixk3C2rFiOCTIREi2ZAbXYNQ,179
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bluecellulab-2.6.49.dist-info/licenses/LICENSE,sha256=dAMAR2Sud4Nead1wGFleKiwTZfkTNZbzmuGfcTKb3kg,11335
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bluecellulab-2.6.49.dist-info/METADATA,sha256=btGOUwph6uJAQSrUhhatlF7JHau3kt4UnyMSjyTyuCk,8236
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bluecellulab-2.6.49.dist-info/WHEEL,sha256=zaaOINJESkSfm_4HQVc5ssNzHCPXhJm0kEUakpsEHaU,91
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bluecellulab-2.6.49.dist-info/top_level.txt,sha256=VSyEP8w9l3pXdRkyP_goeMwiNA8KWwitfAqUkveJkdQ,13
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bluecellulab-2.6.49.dist-info/RECORD,,
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