bluecellulab 2.6.42__py3-none-any.whl → 2.6.43__py3-none-any.whl

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Files changed (10) hide show
  1. bluecellulab/analysis/inject_sequence.py +4 -4
  2. bluecellulab/cell/injector.py +1 -1
  3. bluecellulab/stimulus/factory.py +289 -361
  4. bluecellulab/stimulus/stimulus.py +782 -0
  5. {bluecellulab-2.6.42.dist-info → bluecellulab-2.6.43.dist-info}/METADATA +1 -1
  6. {bluecellulab-2.6.42.dist-info → bluecellulab-2.6.43.dist-info}/RECORD +10 -9
  7. {bluecellulab-2.6.42.dist-info → bluecellulab-2.6.43.dist-info}/WHEEL +1 -1
  8. {bluecellulab-2.6.42.dist-info → bluecellulab-2.6.43.dist-info}/AUTHORS.txt +0 -0
  9. {bluecellulab-2.6.42.dist-info → bluecellulab-2.6.43.dist-info}/LICENSE +0 -0
  10. {bluecellulab-2.6.42.dist-info → bluecellulab-2.6.43.dist-info}/top_level.txt +0 -0
bluecellulab/analysis/inject_sequence.py CHANGED
@@ -30,7 +30,7 @@ class Recording(NamedTuple):
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  current: np.ndarray
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  voltage: np.ndarray
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  time: np.ndarray
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- spike: np.ndarray | None
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+ spike: Optional[np.ndarray] = None
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  StimulusRecordings = Dict[str, Recording]
@@ -46,7 +46,7 @@ def run_stimulus(
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  recording_section: str = "soma[0]",
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  recording_segment: float = 0.5,
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  enable_spike_detection: bool = False,
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- threshold_spike_detection: float = -30,
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+ threshold_spike_detection: float = -30.0,
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  ) -> Recording:
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  """Creates a cell from template parameters, applies a stimulus, and records
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  the response.
@@ -135,9 +135,9 @@ def apply_multiple_stimuli(
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  stimulus_name: StimulusName,
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  amplitudes: Sequence[float],
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  threshold_based: bool = True,
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- section_name: str | None = None,
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+ section_name: Optional[str] = None,
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  segment: float = 0.5,
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- n_processes: int | None = None,
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+ n_processes: Optional[int] = None,
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  cvode: bool = True,
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  add_hypamp: bool = True,
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  ) -> StimulusRecordings:
bluecellulab/cell/injector.py CHANGED
@@ -280,7 +280,7 @@ class InjectableMixin:
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  rng = neuron.h.Random()
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  rng.Random123(seed1, seed2, seed3)
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  else:
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- raise BluecellulabError("Shot noise stimulus requires Random123")
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+ raise BluecellulabError("Ornstein-Uhlenbeck noise stimulus requires Random123")
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  self.persistent.append(rng)
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  return rng