bluecellulab 2.6.32__py3-none-any.whl → 2.6.34__py3-none-any.whl

bluecellulab/cell/template.py

@@ -21,6 +21,7 @@ from pathlib import Path
 import re
 import string
 from typing import NamedTuple, Optional
+import uuid
 
 import neuron
 
@@ -126,8 +127,8 @@ class NeuronTemplate:
         # templates load outside of bluecellulab
         template_name = "%s_bluecellulab" % template_name
         template_name = get_neuron_compliant_template_name(template_name)
-        obj_address = hex(id(self))
-        template_name = f"{template_name}_{obj_address}"
+        unique_id = uuid.uuid4().hex
+        template_name = f"{template_name}_{unique_id}"
 
         template_content = re.sub(
             r"begintemplate\s*(\S*)",

{bluecellulab-2.6.32.dist-info → bluecellulab-2.6.34.dist-info}/LICENSE

@@ -1,10 +1,3 @@
-BlueCellulab is licensed under the Apache License, unless noted otherwise, 
-e.g., for external dependencies such as MOD or morphology files.
-For MOD files for which the original source is available on ModelDB, 
-any specific licenses on mentioned on ModelDB, or the generic License of ModelDB apply.
-The licenses of the morphology files used in this repository are available on: https://zenodo.org/record/5909613
-
-
                                  Apache License
                            Version 2.0, January 2004
                         http://www.apache.org/licenses/

{bluecellulab-2.6.32.dist-info → bluecellulab-2.6.34.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bluecellulab
-Version: 2.6.32
+Version: 2.6.34
 Summary: Biologically detailed neural network simulations and analysis.
 Author: Blue Brain Project, EPFL
 License: Apache2.0
@@ -46,9 +46,10 @@ BlueCelluLab
 +----------------+------------+
 | Gitter         | |gitter|   |
 +----------------+------------+
-| Citation       | |zenodo|   |
+| Paper          | |joss|     |
++----------------+------------+
+| Zenodo         | |zenodo|   |
 +----------------+------------+
-
 
 The Blue Brain Cellular Laboratory is designed for simulations and experiments on individual cells or groups of cells.
 Suitable use cases for BlueCelluLab include:
@@ -68,20 +69,25 @@ Suitable use cases for BlueCelluLab include:
 Citation
 ========
 
-When you use this BlueCelluLab software for your research, we ask you to cite the following reference(this includes poster presentations):
+When using the BlueCelluLab software for your research, please cite the following paper (including for poster presentations): `BlueCelluLab: Biologically Detailed Neural Network Experimentation API <https://doi.org/10.21105/joss.07026>`_
 
 .. code-block::
 
-    @software{bluecellulab_zenodo,
-      author       = {Tuncel, Anil and Van Geit, Werner and Gevaert, Mike and Torben-Nielsen, Benjamin and Mandge, Darshan and Kilic, Ilkan and Jaquier, Aurélien and Muller, Eilif and Kanari, Lida and Markram, Henry},
-      title        = {BlueCelluLab},
-      month        = jul,
-      year         = 2023,
-      publisher    = {Zenodo},
-      doi          = {10.5281/zenodo.8113483},
-      url          = {https://doi.org/10.5281/zenodo.8113483}
+    @article{Tuncel2024,
+        doi = {10.21105/joss.07026},
+        url = {https://doi.org/10.21105/joss.07026},
+        year = {2024},
+        publisher = {The Open Journal},
+        volume = {9},
+        number = {100},
+        pages = {7026},
+        author = {Anıl Tuncel and Werner Van Geit and Mike Gevaert and Benjamin Torben-Nielsen and Darshan Mandge and İlkan Kılıç and Aurélien Jaquier and Eilif Muller and Lida Kanari and Henry Markram},
+        title = {BlueCelluLab: Biologically Detailed Neural Network Experimentation API},
+        journal = {Journal of Open Source Software}
     }
 
+If you need to cite a specific version, please use the DOI provided by `Zenodo <https://zenodo.org/records/8113483>`_, which you can access via the "Cite this repository" button at the top of the repository page.
+
 Support
 =======
 
@@ -191,6 +197,10 @@ The licenses of the morphology files used in this repository are available on: h
                  :target: https://gitter.im/BlueBrain/BlueCelluLab
                  :alt: Join the chat at https://gitter.im/BlueBrain/BlueCelluLab
 
+.. |joss| image:: https://joss.theoj.org/papers/effd553ca48734a2966d9d7ace3b05ff/status.svg
+                :target: https://joss.theoj.org/papers/effd553ca48734a2966d9d7ace3b05ff
+                :alt: JOSS
+
 .. |zenodo| image:: https://zenodo.org/badge/640805129.svg
                  :target: https://zenodo.org/badge/latestdoi/640805129
 

{bluecellulab-2.6.32.dist-info → bluecellulab-2.6.34.dist-info}/RECORD

@@ -27,7 +27,7 @@ bluecellulab/cell/section_distance.py,sha256=QrNJ_avRSm-PFZfSg-FrcCqu-BNZNwcbECw
 bluecellulab/cell/serialized_sections.py,sha256=5JfLNgrUKdyYe4mKFIH2zMnT5QohNB9JYXbe475goEg,1543
 bluecellulab/cell/sonata_proxy.py,sha256=1FsMDosS7fbffgY_shaBKVIXjkmxL5aiPLlxcgeAUsc,1529
 bluecellulab/cell/stimuli_generator.py,sha256=DwWX8Keed1KgKExwlD4u-h4WUhEXcsG7XPjJTxqfZaQ,7129
-bluecellulab/cell/template.py,sha256=TYkHR_6OiimycNu8TfNTmnVqjR9hURYHd5FOg5n5z2A,7562
+bluecellulab/cell/template.py,sha256=JigOhRh52AX9nE25lDhYPUaDsTz7mhW-mUD-8x8tpoM,7573
 bluecellulab/cell/ballstick/__init__.py,sha256=v1Z8tHFfbpWShxOBdShCUaE0utoz-7rZumuNBQtNOFI,439
 bluecellulab/cell/ballstick/emodel.hoc,sha256=7WcuepK-wB9bASRvNdCwO9Woc9-SpBCFqBqCXKgjsV8,1517
 bluecellulab/cell/ballstick/morphology.asc,sha256=EO0VIRilJAwpiDP2hIevwusfvYptNYhvsu1f5GgbSQo,190
@@ -62,9 +62,9 @@ bluecellulab/stimulus/factory.py,sha256=XDbnqCuMCh1RdZLKvlRucMj3wkXDqy6mEda_Oh6Y
 bluecellulab/synapse/__init__.py,sha256=RW8XoAMXOvK7OG1nHl_q8jSEKLj9ZN4oWf2nY9HAwuk,192
 bluecellulab/synapse/synapse_factory.py,sha256=NHwRMYMrnRVm_sHmyKTJ1bdoNmWZNU4UPOGu7FCi-PE,6987
 bluecellulab/synapse/synapse_types.py,sha256=zs_yBvGTH4QrbQF3nEViidyq1WM_ZcTSFdjUxB3khW0,16871
-bluecellulab-2.6.32.dist-info/AUTHORS.txt,sha256=EDs3H-2HXBojbma10psixk3C2rFiOCTIREi2ZAbXYNQ,179
-bluecellulab-2.6.32.dist-info/LICENSE,sha256=xOouu1gC1GGklDxkITlaVl60I9Ab860O-nZsFbWydvU,11749
-bluecellulab-2.6.32.dist-info/METADATA,sha256=UmnDUxbqSs2x9cW6PJaSY5wWJesh2THVcm06eB5Nu6g,7359
-bluecellulab-2.6.32.dist-info/WHEEL,sha256=HiCZjzuy6Dw0hdX5R3LCFPDmFS4BWl8H-8W39XfmgX4,91
-bluecellulab-2.6.32.dist-info/top_level.txt,sha256=VSyEP8w9l3pXdRkyP_goeMwiNA8KWwitfAqUkveJkdQ,13
-bluecellulab-2.6.32.dist-info/RECORD,,
+bluecellulab-2.6.34.dist-info/AUTHORS.txt,sha256=EDs3H-2HXBojbma10psixk3C2rFiOCTIREi2ZAbXYNQ,179
+bluecellulab-2.6.34.dist-info/LICENSE,sha256=dAMAR2Sud4Nead1wGFleKiwTZfkTNZbzmuGfcTKb3kg,11335
+bluecellulab-2.6.34.dist-info/METADATA,sha256=tpjX2bcKuQjN8HProRyyYK72q1VQBmL4Vt07gWIq-Gk,8059
+bluecellulab-2.6.34.dist-info/WHEEL,sha256=Mdi9PDNwEZptOjTlUcAth7XJDFtKrHYaQMPulZeBCiQ,91
+bluecellulab-2.6.34.dist-info/top_level.txt,sha256=VSyEP8w9l3pXdRkyP_goeMwiNA8KWwitfAqUkveJkdQ,13
+bluecellulab-2.6.34.dist-info/RECORD,,

{bluecellulab-2.6.32.dist-info → bluecellulab-2.6.34.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (72.2.0)
+Generator: setuptools (73.0.1)
 Root-Is-Purelib: true
 Tag: py3-none-any